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Metabolomic Profiling Reveals Deep Chemical Divergence Between Two
OPEN Metabolomic profiling reveals deep SUBJECT AREAS: chemical divergence between two METABOLOMICS CHEMICAL ECOLOGY morphotypes of the zoanthid BIODIVERSITY MASS SPECTROMETRY Parazoanthus axinellae Nadja Cachet1, Gre´gory Genta-Jouve1,2, Julijana Ivanisevic1,3, Pierre Chevaldonne´3, Fre´de´ric Sinniger4,5, Received Ge´rald Culioli1,6, Thierry Pe´rez3 & Olivier P. Thomas1,3 10 October 2014 Accepted 1Institut de Chimie de Nice - EEIC, UMR 7272 CNRS, Universite´ de Nice-Sophia Antipolis, Parc Valrose, 06108 Nice, France, 8 January 2015 2Laboratoire de Pharmacognosie et de Chimie des Substances Naturelles, UMR CNRS 8638 COMETE, Universite´ Paris Descartes, 4 Avenue de l’Observatoire 75006 Paris, France, 3Institut Me´diterrane´en de Biodiversite´ et d’Ecologie Marine et Continentale, UMR Published 7263 CNRS, IRD, Aix Marseille Universite´, Avignon Universite´, Station Marine d’Endoume, Rue Batterie des Lions, 13007 6 February 2015 Marseille, France, 4Japan Agency for Marine-Earth Science and Technology, 224-3 Aza-Toyohara, Nago City, Okinawa 905- 2172, Japan, 5Tropical Biosphere Reseach Center, University of the Ryukyus, 3422 Sesoko, Motobu, Okinawa 905-0227, Japan, 6MAPIEM, EA 4323 Universite´ de Toulon, 83957 La Garde, France. Correspondence and requests for materials Metabolomics has recently proven its usefulness as complementary tool to traditional morphological and should be addressed to genetic analyses for the classification of marine invertebrates. Among the metabolite-rich cnidarian order T.P. (thierry.perez@ Zoantharia, Parazoanthus is a polyphyletic genus whose systematics and phylogeny remain controversial. imbe.fr) or O.P.T. Within this genus, one of the most studied species, Parazoanthus axinellae is prominent in rocky shallow (olivier.thomas@unice. waters of the Mediterranean Sea and the NE Atlantic Ocean. -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
Three New Species and the Molecular Phylogeny of Antipathozoanthus
A peer-reviewed open-access journal ZooKeys 725: 97–122Three (2017) new species and the molecular phylogeny ofAntipathozoanthus ... 97 doi: 10.3897/zookeys.725.21006 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Three new species and the molecular phylogeny of Antipathozoanthus from the Indo-Pacific Ocean (Anthozoa, Hexacorallia, Zoantharia) Hiroki Kise1,2, Takuma Fujii1,3, Giovanni Diego Masucci1, Piera Biondi1, James Davis Reimer1,2,4 1 Molecular Invertebrate Systematics and Ecology Laboratory, Graduate School of Engineering and Science, University of the Ryukyus, 1 Senbaru, Nishihara, Okinawa 903-0213, Japan 2 Palau International Coral Reef Center, 1-M-Dock Road, Koror, Palau 96940 3 Research Center for Island Studies Amami Station, Kagoshima University, Naze-Yanagimachi 2-1, Amami, Kagoshima 894-0032, Japan 4 Tropical Biosphere Research Cen- ter, University of the Ryukyus, 1 Senbaru, Nishihara, Okinawa 903-0213, Japan Corresponding author: Hiroki Kise ([email protected]) Academic editor: B.W. Hoeksema | Received 15 September 2017 | Accepted 7 November 2017 | Published 29 December 2017 http://zoobank.org/E47535C1-21CF-417C-A212-F6E819080565 Citation: Kise H, Fujii T, Masucci GD, Biondi P, Reimer JD (2017) Three new species and the molecular phylogeny of Antipathozoanthus from the Indo-Pacific Ocean (Anthozoa, Hexacorallia, Zoantharia). ZooKeys 725: 97–122.https:// doi.org/10.3897/zookeys.725.21006 Abstract In this study, three new species of macrocnemic zoantharians (Hexacorallia, Zoantharia) are described from localities in the Indo-Pacific Ocean including the Red Sea, the Maldives, Palau, and southern Ja- pan: Antipathozoanthus obscurus sp. n., A. remengesaui sp. n., and A. cavernus sp. -
Strong Linkages Between Depth, Longevity and Demographic Stability Across Marine Sessile Species
Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals Doctorat en Ecologia, Ciències Ambientals i Fisiologia Vegetal Resilience of Long-lived Mediterranean Gorgonians in a Changing World: Insights from Life History Theory and Quantitative Ecology Memòria presentada per Ignasi Montero Serra per optar al Grau de Doctor per la Universitat de Barcelona Ignasi Montero Serra Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals Universitat de Barcelona Maig de 2018 Adivsor: Adivsor: Dra. Cristina Linares Prats Dr. Joaquim Garrabou Universitat de Barcelona Institut de Ciències del Mar (ICM -CSIC) A todas las que sueñan con un mundo mejor. A Latinoamérica. A Asun y Carlos. AGRADECIMIENTOS Echando la vista a atrás reconozco que, pese al estrés del día a día, este ha sido un largo camino de aprendizaje plagado de momentos buenos y alegrías. También ha habido momentos más difíciles, en los cuáles te enfrentas de cara a tus propias limitaciones, pero que te empujan a desarrollar nuevas capacidades y crecer. Cierro esta etapa agradeciendo a toda la gente que la ha hecho posible, a las oportunidades recibidas, a las enseñanzas de l@s grandes científic@s que me han hecho vibrar en este mundo, al apoyo en los momentos más complicados, a las que me alegraron el día a día, a las que hacen que crea más en mí mismo y, sobre todo, a la gente buena que lucha para hacer de este mundo un lugar mejor y más justo. A tod@s os digo gracias! GRACIAS! GRÀCIES! THANKS! Advisors’ report Dra. Cristina Linares, professor at Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals (Universitat de Barcelona), and Dr. -
Microfilms International 300 N
INFORMATION TO USERS This was produced from a copy of a document sent to us for microfilming, While the most advanced technological means to photograph and reproduce this document have been used, the quality is heavily dependent upon the quality of the material submitted. The following explanation of techniques is provided to help you understand markings or notations which may appear on this reproduction. 1. The sign or "target" for pages apparently lacking from the document photographed is "Missing Page(s)". Ifit was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. This may have necessitated cutting through an image and duplicating adjacent pages to assure you of complete continuity. 2. When an image on the film is obliterated with a round black mark it is an indication that the film inspector noticed either blurred copy because of movement during exposure, or duplicate copy. Unless we meant to delete copyrighted materials that should not have been filmed, you will find a good image of the page in the adjacent frame. 3. When a map, drawing or chart, etc., is part of the material being photo graphed the photographer has followed a definite method in "sectioning" the material. Itis customary to begin filming at the upper left hand comer of a large sheet and to continue from left to right in equal sections with small overlaps. If necessary, sectioning is continued again-beginning below the first row and continuing on until complete. 4. For any illustrations that cannot be reproduced satisfactorily by xerography, photographic prints can be purchased at additional cost and tipped into your xerographic copy. -
DNA Barcoding of Marine Metazoa
MA03CH18-Bucklin ARI 9 August 2010 20:58 V I E E W R S Review in Advance first posted online I E on August 18, 2010. (Changes may N C still occur before final publication N online and in print.) A D V A DNA Barcoding of Marine Metazoa Ann Bucklin,1 Dirk Steinke,2 and Leocadio Blanco-Bercial3 1Department of Marine Sciences, University of Connecticut, Groton, Connecticut 06340; email: [email protected] 2Biodiversity Institute of Ontario, University of Guelph, Ontario, N1G 2W1 Canada; email: [email protected] 3Department of Marine Sciences, University of Connecticut, Groton, Connecticut 06340; email: [email protected] Annu. Rev. Mar. Sci. 2011. 3:18.1–18.38 Key Words The Annual Review of Marine Science is online at DNA barcode, marine biodiversity, taxonomy, species identification, marine.annualreviews.org mitochondrial DNA This article’s doi: 10.1146/annurev-marine-120308-080950 Abstract Copyright c 2011 by Annual Reviews. More than 230,000 known species representing 31 metazoan phyla populate All rights reserved the world’s oceans. Perhaps another 1,000,000 or more species remain to 1941-1405/11/0115-0001$20.00 be discovered. There is reason for concern that species extinctions may out- by University of Connecticut on 09/11/10. For personal use only. pace discovery, especially in diverse and endangered marine habitats such as Annu. Rev. Marine. Sci. 2011.3. Downloaded from www.annualreviews.org coral reefs. DNA barcodes (i.e., short DNA sequences for species recogni- tion and discrimination) are useful tools to accelerate species-level analysis of marine biodiversity and to facilitate conservation efforts. -
Assessing the Zoantharian Diversity of the Tropical Eastern Pacific
www.nature.com/scientificreports OPEN Assessing the Zoantharian Diversity of the Tropical Eastern Pacifc through an Integrative Received: 13 December 2017 Accepted: 13 April 2018 Approach Published: xx xx xxxx Karla B. Jaramillo 1,2, Miriam Reverter3, Paul O. Guillen 1,3, Grace McCormack2, Jenny Rodriguez 1, Frédéric Sinniger 4 & Olivier P. Thomas 3 Zoantharians represent a group of marine invertebrates widely distributed from shallow waters to the deep sea. Despite a high diversity and abundance in the rocky reefs of the Pacifc Ocean, very few studies have been reported on the diversity of this group in the Tropical Eastern Pacifc coasts. While molecular techniques recently clarifed some taxonomic relationships within the order, the taxonomy of zoantharians is still highly challenging due to a lack of clear morphological characters and confusing use of diferent data in previous studies. Our frst insight into the zoantharian diversity at El Pelado Marine Protected Area - Ecuador led to the identifcation of six species: Terrazoanthus patagonichus; Terrazoanthus sp.; Antipathozoanthus hickmani; Parazoanthus darwini; Zoanthus cf. pulchellus; and Zoanthus cf. sociatus. A metabolomic approach using UHPLC-HRMS was proven to be very efcient as a complementary tool in the systematics of these species and specialized metabolites of the ecdysteroid and alkaloid families were identifed as key biomarkers for interspecifc discrimination. These results show good promise for an application of this integrative approach to other zoantharians. Te marine biodiversity of the Tropical Eastern Pacifc ecoregion has been poorly studied in comparison to hot- spots of biodiversity like the Central Indo-Pacifc with a notable exception of the Galapagos islands1. -
Evolution of Anthozoan Polyp Retraction Mechanisms: Convergent
Swain et al. BMC Evolutionary Biology (2015) 15:123 DOI 10.1186/s12862-015-0406-1 RESEARCH ARTICLE Open Access Evolution of anthozoan polyp retraction mechanisms: convergent functional morphology and evolutionary allometry of the marginal musculature in order Zoanthidea (Cnidaria: Anthozoa: Hexacorallia) Timothy D. Swain1,2*, Jennifer L. Schellinger3, Anna M. Strimaitis3 and Kim E. Reuter4 Abstract Background: Retraction is among the most important basic behaviors of anthozoan Cnidaria polyps and is achieved through the coordinated contraction of at least six different muscle groups. Across the Anthozoa, these muscles range from unrecognizable atrophies to massive hypertrophies, producing a wide diversity of retraction abilities and functional morphologies. The marginal musculature is often the single largest component of the retraction mechanism and is composed of a diversity of muscular, attachment, and structural features. Although the arrangements of these features have defined the higher taxonomy of Zoanthidea for more than 100 years, a decade of inferring phylogenies from nucleotide sequences has demonstrated fundamental misconceptions of their evolution. Results: Here we expand the diversity of known marginal muscle forms from two to at least ten basic states and reconstruct the evolution of its functional morphology across the most comprehensive molecular phylogeny available. We demonstrate that the evolution of these forms follows a series of transitions that are much more complex than previously hypothesized and converge on similar forms multiple times. Evolution of the marginal musculature and its attachment and support structures are partially scaled according to variation in polyp and muscle size, but also vary through evolutionary allometry. Conclusions: Although the retraction mechanisms are diverse and their evolutionary histories complex, their morphologies are largely reflective of the evolutionary relationships among Zoanthidea higher taxa and may offer a key feature for integrative systematics. -
Parazoanthus Haddon & Shackleton, 1891, and Parazoanthidae Delage
Zootaxa 2995: 64–68 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) Parazoanthus Haddon & Shackleton, 1891, and Parazoanthidae Delage & Hérouard, 1901: Conservation of usage by Reversal of Precedence with Bergia Duchassaing & Michelotti, 1860, and Bergiidae Verrill, 1869 (Cnidaria: Anthozoa: Hexacorallia) MARTYN E. Y. LOW1 & JAMES DAVIS REIMER2,3 1Department of Marine and Environmental Sciences, Graduate School of Engineering and Science, University of the Ryukyus, 1 Sen- baru, Nishihara, Okinawa 903-0213, Japan. E-mail: [email protected] 2Molecular Invertebrate Systematics and Ecology Laboratory, Rising Star Program, Trans-disciplinary Organization for Subtropical Island Studies, University of the Ryukyus, 1 Senbaru, Nishihara, Okinawa 903-0213, Japan; Marine Biodiversity Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima, Yokosuka, Kana- gawa 237-0061, Japan. E-mail: [email protected] 3Corresponding author Abstract The names Bergia Duchassaing & Michelotti, 1860, and Bergiidae Verrill, 1869, are respectively, senior subjective syn- onyms of Parazoanthus Haddon & Shackleton, 1891, and Parazoanthidae Delage & Hérouard, 1901. The junior synonyms Parazoanthus and Parazoanthidae are in current and widespread use. In the interest of nomenclatural stability, we enact Articles 23.9.1 and 23.9.2 to reverse precedence of these names, thereby making Parazoanthus and Parazoanthidae nomi- na protecta, and Bergia and Bergiidae nomina oblita. Key words: Zoantharia, Zoanthidea, Article 23.9.1, Article 23.9.2, ICZN, nomenclature The family Parazoanthidae Delage & Hérouard, 1901, and its type genus Parazoanthus Haddon & Shackleton, 1891, are a group of zoanthids frequently epizoic on sponges or other benthic organisms (see Reimer & Sinniger 2010: 253). -
2018-Jaramillo Et Al. Scirep.P
Assessing the Zoantharian Diversity of the Tropical Eastern Pacific through an Integrative Approach Karla Jaramillo, Miriam Reverter, Paul Guillen, Grace Mccormack, Jenny Rodriguez, Frédéric Sinniger, Olivier Thomas To cite this version: Karla Jaramillo, Miriam Reverter, Paul Guillen, Grace Mccormack, Jenny Rodriguez, et al.. Assessing the Zoantharian Diversity of the Tropical Eastern Pacific through an Integrative Approach. Scientific Reports, Nature Publishing Group, 2018, 10.1038/s41598-018-25086-4. hal-03020857 HAL Id: hal-03020857 https://hal.archives-ouvertes.fr/hal-03020857 Submitted on 24 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. www.nature.com/scientificreports OPEN Assessing the Zoantharian Diversity of the Tropical Eastern Pacifc through an Integrative Received: 13 December 2017 Accepted: 13 April 2018 Approach Published: xx xx xxxx Karla B. Jaramillo 1,2, Miriam Reverter3, Paul O. Guillen 1,3, Grace McCormack2, Jenny Rodriguez 1, Frédéric Sinniger 4 & Olivier P. Thomas 3 Zoantharians represent a group of marine invertebrates widely distributed from shallow waters to the deep sea. Despite a high diversity and abundance in the rocky reefs of the Pacifc Ocean, very few studies have been reported on the diversity of this group in the Tropical Eastern Pacifc coasts. -
Potential of DNA Sequences to Identify Zoanthids (Cnidaria: Zoantharia)
ZOOLOGICAL SCIENCE 25: 1253–1260 (2008) © 2008 Zoological Society of Japan Potential of DNA Sequences to Identify Zoanthids (Cnidaria: Zoantharia) Frederic Sinniger1,2*, James D. Reimer1,3 and Jan Pawlowski2 1Department of Chemistry, Biology and Marine Science, Faculty of Science, University of the Ryukyus, 1 Senbaru, Nishihara, Okinawa 903-0213, Japan 2University of Geneva, Department of Zoology and Animal Biology, Molecular Systematic Group, Science III, 30 quai Ernest-Ansermet, 1211 Genève 4, Switzerland 3Research Program for Marine Biology and Ecology, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima, Yokosuka, Kanagawa 237-0061, Japan The order Zoantharia is known for its chaotic taxonomy and difficult morphological identification. One method that potentially could help for examining such troublesome taxa is DNA barcoding, which identifies species using standard molecular markers. The mitochondrial cytochrome oxidase subunit I (COI) has been utilized to great success in groups such as birds and insects; however, its applicability in many other groups is controversial. Recently, some studies have suggested that barcoding is not applicable to anthozoans. Here, we examine the use of COI and mitochondrial 16S ribosomal DNA for zoanthid identification. Despite the absence of a clear barcoding gap, our results show that for most of 54 zoanthid samples, both markers could separate samples to the species, or species group, level, particularly when easily accessible ecological or distributional data were included. Additionally, we have used the short V5 region of mt 16S rDNA to identify eight old (13 to 50 years old) museum samples. We discuss advantages and disadvantages of COI and mt 16S rDNA as barcodes for Zoantharia, and recommend that either one or both of these markers be considered for zoanthid identification in the future. -
Redalyc.Lista De Zoantharia (Cnidaria: Anthozoa)
Biota Colombiana ISSN: 0124-5376 [email protected] Instituto de Investigación de Recursos Biológicos "Alexander von Humboldt" Colombia Acosta, Alberto; Casas, Mauricio; Vargas, Carlos A .; Camacho, Juan E. Lista de Zoantharia (Cnidaria: Anthozoa) del Caribe y de Colombia Biota Colombiana, vol. 6, núm. 2, 2005, pp. 147-161 Instituto de Investigación de Recursos Biológicos "Alexander von Humboldt" Bogotá, Colombia Disponible en: http://www.redalyc.org/articulo.oa?id=49160201 Cómo citar el artículo Número completo Sistema de Información Científica Más información del artículo Red de Revistas Científicas de América Latina, el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto Biota Colombiana 6 (2) 147 - 162, 2005 Lista de Zoantharia (Cnidaria: Anthozoa) del Caribe y de Colombia Alberto Acosta1, Mauricio Casas2, Carlos A .Vargas y Juan E. Camacho3. Pontificia Universidad Javeriana, Departamento de Biología, UNESIS. [email protected], [email protected], 3 [email protected] Palabras Clave: Lista de especies, Zoantharia, Caribe, Colombia Introducción Zoantharia es un orden de gran importancia en la y varias especies están pobremente definidos (diagnosis subclase Hexacorallia (clase Anthozoa), usualmente incompleta), por lo que requieren urgente revisión. Aunque conocidos como Zoantideos o anémonas coloniales. Está identificar a nivel de género es posible, tener plena certeza compuesto en su mayoría por organismos coloniales sobre la identidad de la especie es más difícil, ya que existe (Herberts 1987), de distribución cosmopolita en los mares alta variabilidad morfológica dentro de una misma especie tropicales y en un intervalo de profundidad entre 0 y más (Reimer et al., 2004), y a que una cantidad de especies de 5000 m (Ryland et al., 2000).