Exploring the Biodiversity of Understudied Benthic Taxa at Mesophotic and Deeper Depths: Examples from the Order Zoantharia (Anthozoa: Hexacorallia)
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Umberto Diego Rodrigues De Oliveira.Pdf
UNIVERSIDADE FEDERAL RURAL DE PERNAMBUCO DEPARTAMENTO DE BIOLOGIA PROGRAMA DE PÓS-GRADUAÇÃO EM ECOLOGIA Umberto Diego Rodrigues de Oliveira Modelagem de nicho ecológico e distribuição de dois corais endêmicos do Brasil RECIFE – PE, Julho de 2019 ii UMBERTO DIEGO RODRIGUES DE OLIVEIRA Modelagem de nicho ecológico e distribuição de dois corais endêmicos do Brasil Dissertação apresentada ao Programa de Pós-Graduação em Ecologia, da Universidade Federal Rural de Pernambuco (PPGE/UFRPE), como parte dos requisitos obrigatórios para obtenção do título de Mestre em Ecologia. Linha de pesquisa: Ecologia de ecossistemas marinhos Orientador: Dr. Carlos Daniel Pérez RECIFE – PE, Julho de 2019 iii Dados Internacionais de Catalogação na Publicação (CIP) Sistema Integrado de Bibliotecas da UFRPE Biblioteca Central, Recife-PE, Brasil O48m Oliveira, Umberto Diego Rodrigues de Modelagem de nicho ecológico e distribuição de dois corais endêmicos do Brasil / Umberto Diego Rodrigues de Oliveira. – 2019. 113 f. : il. Orientador: Carlos Daniel Pérez. Coorientadoras: Viviane Lúcia dos Santos Almeida de Melo. Dissertação (Mestrado) – Universidade Federal Rural de Pernambuco, Programa de Pós-Graduação em Ecologia, Recife, BR- PE, 2019. Inclui referências e apêndice(s). 1. Species Distribution Models 2. Maxent 3. AUC 4. Cnidária 5. Corais - Brasil I. Pérez, Carlos Daniel, orient. II. Título CDD 574.5 iv UMBERTO DIEGO RODRIGUES DE OLIVEIRA Modelagem de nicho ecológico e distribuição de dois corais endêmicos do Brasil Dissertação apresentada ao Programa de Pós-Graduação em Ecologia, da Universidade Federal Rural de Pernambuco (PPGE/UFRPE), como parte dos requisitos obrigatórios para obtenção do título de Mestre em Ecologia. BANCA EXAMINADORA _________________________________________________________________________ Prof. Dr. Carlos Daniel Pérez – UFPE Presidente da banca e orientador Profª. -
Deepseacorals.Pdf
Protection of Deep-Sea Corals from Physical Damage by Fishing Gear under the MSA Deep Sea Coral Discretionary Authority Purpose The National Oceanic and Atmospheric Administration (NOAA) is a steward of the nation’s living marine resources. This document will assist NOAA offices and the regional fishery management councils (Councils)1 when developing protective measures for deep-sea corals under section 303(b)(2)(B) of the Magnuson-Stevens Fishery Conservation and Management Act (MSA).2 Section 303(b)(2) provides that any fishery management plan (FMP) which is prepared by any Council or the Secretary, with respect to any fishery, may: A) designate zones where, and periods when, fishing shall be limited, or shall not be permitted, or shall be permitted only by specified types of fishing vessels or with specified types and quantities of fishing gear; B) designate such zones in areas where deep sea corals are identified under section 408 [the Deep Sea Coral Research and Technology Program], to protect deep sea corals from physical damage from fishing gear or to prevent loss or damage to such fishing gear from interactions with deep sea corals, after considering long-term sustainable uses of fishery resources in such areas. 16 U.S.C. § 1853(b)(2)(A)-(B). We encourage use of this discretionary authority to advance the agency’s and Councils’ conservation objectives. NOAA’s Strategic Plan for Deep-Sea Coral and Sponge Ecosystems seeks to ensure that fisheries that may interact with known and likely deep-sea coral ecosystems are identified and monitored and that such ecosystems are protected from the impacts of fishing gear (see Figure 1).3 This document is consistent with those policy goals. -
Metabolomic Profiling Reveals Deep Chemical Divergence Between Two
OPEN Metabolomic profiling reveals deep SUBJECT AREAS: chemical divergence between two METABOLOMICS CHEMICAL ECOLOGY morphotypes of the zoanthid BIODIVERSITY MASS SPECTROMETRY Parazoanthus axinellae Nadja Cachet1, Gre´gory Genta-Jouve1,2, Julijana Ivanisevic1,3, Pierre Chevaldonne´3, Fre´de´ric Sinniger4,5, Received Ge´rald Culioli1,6, Thierry Pe´rez3 & Olivier P. Thomas1,3 10 October 2014 Accepted 1Institut de Chimie de Nice - EEIC, UMR 7272 CNRS, Universite´ de Nice-Sophia Antipolis, Parc Valrose, 06108 Nice, France, 8 January 2015 2Laboratoire de Pharmacognosie et de Chimie des Substances Naturelles, UMR CNRS 8638 COMETE, Universite´ Paris Descartes, 4 Avenue de l’Observatoire 75006 Paris, France, 3Institut Me´diterrane´en de Biodiversite´ et d’Ecologie Marine et Continentale, UMR Published 7263 CNRS, IRD, Aix Marseille Universite´, Avignon Universite´, Station Marine d’Endoume, Rue Batterie des Lions, 13007 6 February 2015 Marseille, France, 4Japan Agency for Marine-Earth Science and Technology, 224-3 Aza-Toyohara, Nago City, Okinawa 905- 2172, Japan, 5Tropical Biosphere Reseach Center, University of the Ryukyus, 3422 Sesoko, Motobu, Okinawa 905-0227, Japan, 6MAPIEM, EA 4323 Universite´ de Toulon, 83957 La Garde, France. Correspondence and requests for materials Metabolomics has recently proven its usefulness as complementary tool to traditional morphological and should be addressed to genetic analyses for the classification of marine invertebrates. Among the metabolite-rich cnidarian order T.P. (thierry.perez@ Zoantharia, Parazoanthus is a polyphyletic genus whose systematics and phylogeny remain controversial. imbe.fr) or O.P.T. Within this genus, one of the most studied species, Parazoanthus axinellae is prominent in rocky shallow (olivier.thomas@unice. waters of the Mediterranean Sea and the NE Atlantic Ocean. -
Arxiv:1810.00224V2 [Q-Bio.PE] 7 Dec 2020 Humanity Is Increasingly Influencing Global Environments [195]
A Survey of Biodiversity Informatics: Concepts, Practices, and Challenges Luiz M. R. Gadelha Jr.1* Pedro C. de Siracusa1 Artur Ziviani1 Eduardo Couto Dalcin2 Helen Michelle Affe2 Marinez Ferreira de Siqueira2 Luís Alexandre Estevão da Silva2 Douglas A. Augusto3 Eduardo Krempser3 Marcia Chame3 Raquel Lopes Costa4 Pedro Milet Meirelles5 and Fabiano Thompson6 1National Laboratory for Scientific Computing, Petrópolis, Brazil 2Friedrich-Schiller-University Jena, Jena, Germany 2Rio de Janeiro Botanical Garden, Rio de Janeiro, Brazil 3Oswaldo Cruz Foundation, Rio de Janeiro, Brazil 4National Institute of Cancer, Rio de Janeiro, Brazil 5Federal University of Bahia, Salvador, Brazil 6Federal University of Rio de Janeiro, Rio de Janeiro, Brazil Abstract The unprecedented size of the human population, along with its associated economic activities, have an ever increasing impact on global environments. Across the world, countries are concerned about the growing resource consumption and the capacity of ecosystems to provide them. To effectively conserve biodiversity, it is essential to make indicators and knowledge openly available to decision-makers in ways that they can effectively use them. The development and deployment of mechanisms to produce these indicators depend on having access to trustworthy data from field surveys and automated sensors, biological collections, molec- ular data, and historic academic literature. The transformation of this raw data into synthesized information that is fit for use requires going through many refinement steps. The methodologies and techniques used to manage and analyze this data comprise an area often called biodiversity informatics (or e-Biodiversity). Bio- diversity data follows a life cycle consisting of planning, collection, certification, description, preservation, discovery, integration, and analysis. -
Coral Reefs in the Anthropocene – Reflecting on 20 Years of Reef Conservation UK
EDITORIAL published: 12 June 2020 doi: 10.3389/fmars.2020.00364 Editorial: Coral Reefs in the Anthropocene – Reflecting on 20 Years of Reef Conservation UK Dominic A. Andradi-Brown 1*, Anastazia T. Banaszak 2, Thomas K. Frazer 3, Hannah Gilchrist 4, Alastair R. Harborne 5, Catherine E. I. Head 6,7, Heather J. Koldewey 8,9, Emma Levy 8, Kirsty Richards 10, Rebecca Short 11, Michael Sweet 12, Kristian Teleki 13,14, Christian R. Voolstra 15, Bryan Wilson 7, Elizabeth Wood 16, Robert T. Yarlett 17 and David J. Curnick 6 1 Ocean Conservation, World Wildlife Fund, Washington, DC, United States, 2 Unidad Académica de Sistemas Arrecifales, Universidad Nacional Autónoma de México, Puerto Morelos, Mexico, 3 School of Natural Resources and Environment, University of Florida, Gainesville, FL, United States, 4 Blue Ventures, Bristol, United Kingdom, 5 Department of Biological Sciences, Florida International University, North Miami, FL, United States, 6 Institute of Zoology, Zoological Society of London, London, United Kingdom, 7 Department of Zoology, University of Oxford, Oxford, United Kingdom, 8 Conservation & Policy, Zoological Society of London, London, United Kingdom, 9 Centre for Ecology and Conservation, University of Exeter, Penryn, United Kingdom, 10 Atmosphere Resorts, Dauin, Philippines, 11 European Centre for Environment and Human Health, University of Exeter Medical School, Royal Cornwall Hospital, Truro, United Kingdom, 12 Aquatic Research Facility, Environmental Sustainability Research Centre, University of Derby, Derby, United Kingdom, -
LEGACY 702 H Street, NW, Suite 300 Washington, DC 20001 Greenpeacefund.Org Spring 2017
NONPROFIT ORG U.S. POSTAGE PAID LANGHORNE, PA PERMIT NO. 114 FUND LEGACY 702 H Street, NW, Suite 300 Washington, DC 20001 greenpeacefund.org Spring 2017 Newly-Discovered Amazon Reef in Danger Last year, researchers made an announcement that was billed as one of the most significant discoveries in marine science in decades: there is a massive reef stretching over six hundred miles long under the plume of the Amazon River. On January 24th, we left the city of Santana, © Jiri Rezac / Greenpeace Amapá, with a team of Brazilian scientists Greenpeace Oceans and sailed out of the Amazon mouth Director John Hocevar aboard the Greenpeace ship Esperanza to Recognized by Charity Navigator explore the reef for the first time. as having demonstrated There was real urgency to our mission, © Greenpeace excellent financial efficiency. as BP, Total, and a Brazilian company planned to begin drilling for oil in the we even arrived at the reef, 100 miles Awarded “Best area. Very little is known about the area, offshore. The Brazilian Navy informed in America Seal” us that we had no authority to dive. by Independent yet decisions were being made that could Charities of put this newly-discovered biome at risk Fortunately, they backed down pretty America. Of before anyone even knew what it looked quickly, and we were ready to begin. I the one million was one of two sub pilots on board, and charities operating like. Our plan was to show the people of in the USA, less Brazil what was at stake, in hopes that brought Dr. Ronaldo Francini-Filho, a than two thousand have been enough of them would want to protect the renowned coral reef ecologist from São awarded this prestigious seal. -
Seasearch Seasearch Wales 2012 Summary Report Summary Report
Seasearch Wales 2012 Summary Report report prepared by Kate Lock, South and West Wales coco----ordinatorordinator Liz MorMorris,ris, North Wales coco----ordinatorordinator Chris Wood, National coco----ordinatorordinator Seasearch Wales 2012 Seasearch is a volunteer marine habitat and species surveying scheme for recreational divers in Britain and Ireland. It is coordinated by the Marine Conservation Society. This report summarises the Seasearch activity in Wales in 2012. It includes summaries of the sites surveyed and identifies rare or unusual species and habitats encountered. These include a number of Welsh Biodiversity Action Plan habitats and species. It does not include all of the detailed data as this has been entered into the Marine Recorder database and supplied to Natural Resources Wales for use in its marine conservation activities. The data is also available on-line through the National Biodiversity Network. During 2012 we continued to focus on Biodiversity Action Plan species and habitats and on sites that had not been previously surveyed. Data from Wales in 2012 comprised 192 Observation Forms, 154 Survey Forms and 1 sea fan record. The total of 347 represents 19% of the data for the whole of Britain and Ireland. Seasearch in Wales is delivered by two Seasearch regional coordinators. Kate Lock coordinates the South and West Wales region which extends from the Severn estuary to Aberystwyth. Liz Morris coordinates the North Wales region which extends from Aberystwyth to the Dee. The two coordinators are assisted by a number of active Seasearch Tutors, Assistant Tutors and Dive Organisers. Overall guidance and support is provided by the National Seasearch Coordinator, Chris Wood. -
Halogenated Tyrosine Derivatives from the Tropical Eastern Pacific
Article Cite This: J. Nat. Prod. 2019, 82, 1354−1360 pubs.acs.org/jnp Halogenated Tyrosine Derivatives from the Tropical Eastern Pacific Zoantharians Antipathozoanthus hickmani and Parazoanthus darwini † ‡ † § ‡ ⊥ ∥ Paul O. Guillen, , Karla B. Jaramillo, , Laurence Jennings, Gregorý Genta-Jouve, , # # # † Mercedes de la Cruz, Bastien Cautain, Fernando Reyes, Jenny Rodríguez, ‡ and Olivier P. Thomas*, † ESPOL Escuela Superior Politecnicá del Litoral, ESPOL, Centro Nacional de Acuacultura e Investigaciones Marinas, Campus Gustavo Galindo km. 30.5 vía Perimetral, P.O. Box 09-01-5863, Guayaquil, Ecuador ‡ Marine Biodiscovery, School of Chemistry and Ryan Institute, National University of Ireland Galway (NUI Galway), University Road, H91 TK33 Galway, Ireland § Zoology, School of Natural Sciences and Ryan Institute, National University of Ireland Galway (NUI Galway), University Road, H91 TK33 Galway, Ireland ⊥ ́ Equipe C-TAC, UMR CNRS 8038 CiTCoM, UniversitéParis Descartes, 4 Avenue de l’Observatoire, 75006 Paris, France ∥ UnitéMoleculeś de Communication et Adaptation des Micro-organismes (UMR 7245), Sorbonne Universites,́ Museuḿ National d’Histoire Naturelle, CNRS, Paris, France # Fundacioń MEDINA, Centro de Excelencia en Investigacioń de Medicamentos Innovadores en Andalucía, Avenida del Conocimiento 34, Parque Tecnologicó de Ciencias de la Salud, E-18016, Armilla, Granada, Spain *S Supporting Information ABSTRACT: In the search for bioactive marine natural products from zoantharians of the Tropical Eastern Pacific, four new tyrosine dipeptides, -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
Stage 1 Screening Report and Stage 2 Natura Impact Statement (NIS) Report
Stage 1 Screening Report and Stage 2 Natura Impact Statement (NIS) Report Proposed New Slipway and Beach Access at Fethard Harbour March 2020 Prepared by DixonBrosnan dixonbrosnan.com Fethard Pier Screening & NIS 1 DixonBrosnan 2020 Dixon.Brosnan environmental consultants Project Stage 1 Screening Report and Stage 2 Natura Impact Statement (NIS) Report for Proposed New Slipway and Beach Access at Fethard Harbour Client T.J O Connor & Associates Project ref Report no Client ref 2023 2023 - DixonBrosnan 12 Steam Packet House, Railway Street, Passage West, Co. Cork Tel 086 851 1437| [email protected] | www.dixonbrosnan.com Date Rev Status Prepared by 10/03/20 2 2nd draft . This report and its contents are copyright of DixonBrosnan. It may not be reproduced without permission. The report is to be used only for its intended purpose. The report is confidential to the client, and is personal and non-assignable. No liability is admitted to third parties. ©DixonBrosnan 2020 v180907 Fethard Pier Screening & NIS 2 DixonBrosnan 2020 1. Introduction 1.1 Background The information in this report has been compiled by DixonBrosnan Environmental Consultants, on behalf of the applicant. It provides information on and assesses the potential for a New Slipway and Beach Access at Fethard Harbour, Fethard on Sea, County Wexford to impact on any European sites within its zone of influence. The information in this report forms part of and should be read in conjunction with the planning application documentation being submitted to the planning authority (Wexford County Council) in connection with the proposed development. A Construction Environmental Management Plan (CEMP) have also been prepared for the proposed development. -
A Comprehensive Review on Morphological, Molecular
A COMPREHENSIVE REVIEW ON MORPHOLOGICAL, MOLECULAR AND PHYLOGENETIC TAXONOMY OF ZOANTHIDS Thakkar Nevya J1, Shah Kinjal R2, Shah Pinal D3, Mankodi Pradeep C4 1,2,3,4Department of Zoology,Faculty of Science,TheMaharaja Sayajirao University of Baroda, Vadodara, Gujarat, (India) ABSTRACT Zoanthids, benthic Anthozoans are found in nearly all marine environments. Despite their relative abundance, Zoanthids have been overlooked by scholars, because of the intrinsic difficulty in establishing a sound taxonomy based on external morphological criteria and internal structure due to the presence of sand and detritus in their body. In nature these cryptic organisms presents high grade of morphologic diversity especially as colour morphs within a species. This review provides a general introduction to Zoanthids, their ecological and pharmaceutical importance and two different methods of taxonomy i.e. morphological and molecular. Congeneric status of Zoanthids is discussed here through phylogeny. Several Molecular techniques and tools used for phylogenetic studies are summarized that are used by researchers in different biological disciplines. Key Words: DNA barcoding, DNA sequencing, phylogenetic analysis,Zoanthids I. INTRODUCTION Amongst all the animals dwelling in marine environment, few groups have so far not been studied well. The hexacorallian order Zoantharia (Family –Zoanthidea), which are found in shallow water, may also make up a considerable component of some deep-sea coral communities have received very little attention (Sinnigeret al. 2013; Burnettet al. 1997). Over the last decade, deep sea corals have received a considerable attention particularly on seamounts (Miller et al., 2009). Within coral reef communities other than corals mostly benthic molluscs have been studied in details. Even though more in diversity as well as abundance the sponges, zoanthids and actinarians are over looked by scientists. -
Three New Species and the Molecular Phylogeny of Antipathozoanthus
A peer-reviewed open-access journal ZooKeys 725: 97–122Three (2017) new species and the molecular phylogeny ofAntipathozoanthus ... 97 doi: 10.3897/zookeys.725.21006 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Three new species and the molecular phylogeny of Antipathozoanthus from the Indo-Pacific Ocean (Anthozoa, Hexacorallia, Zoantharia) Hiroki Kise1,2, Takuma Fujii1,3, Giovanni Diego Masucci1, Piera Biondi1, James Davis Reimer1,2,4 1 Molecular Invertebrate Systematics and Ecology Laboratory, Graduate School of Engineering and Science, University of the Ryukyus, 1 Senbaru, Nishihara, Okinawa 903-0213, Japan 2 Palau International Coral Reef Center, 1-M-Dock Road, Koror, Palau 96940 3 Research Center for Island Studies Amami Station, Kagoshima University, Naze-Yanagimachi 2-1, Amami, Kagoshima 894-0032, Japan 4 Tropical Biosphere Research Cen- ter, University of the Ryukyus, 1 Senbaru, Nishihara, Okinawa 903-0213, Japan Corresponding author: Hiroki Kise ([email protected]) Academic editor: B.W. Hoeksema | Received 15 September 2017 | Accepted 7 November 2017 | Published 29 December 2017 http://zoobank.org/E47535C1-21CF-417C-A212-F6E819080565 Citation: Kise H, Fujii T, Masucci GD, Biondi P, Reimer JD (2017) Three new species and the molecular phylogeny of Antipathozoanthus from the Indo-Pacific Ocean (Anthozoa, Hexacorallia, Zoantharia). ZooKeys 725: 97–122.https:// doi.org/10.3897/zookeys.725.21006 Abstract In this study, three new species of macrocnemic zoantharians (Hexacorallia, Zoantharia) are described from localities in the Indo-Pacific Ocean including the Red Sea, the Maldives, Palau, and southern Ja- pan: Antipathozoanthus obscurus sp. n., A. remengesaui sp. n., and A. cavernus sp.