Using JCP Format

Total Page:16

File Type:pdf, Size:1020Kb

Using JCP Format University of Groningen An ab initio two-component relativistic method including spin- orbit coupling using the regular approximation Faas, S.; van Lenthe, J. H.; Hennum, A. C.; Snijders, J. G. Published in: Journal of Chemical Physics DOI: 10.1063/1.1288387 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2000 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Faas, S., van Lenthe, J. H., Hennum, A. C., & Snijders, J. G. (2000). An ab initio two-component relativistic method including spin- orbit coupling using the regular approximation. Journal of Chemical Physics, 113(10), 4052 - 4059. [PII [S0021-9606(00)32034-7]]. https://doi.org/10.1063/1.1288387 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). The publication may also be distributed here under the terms of Article 25fa of the Dutch Copyright Act, indicated by the “Taverne” license. More information can be found on the University of Groningen website: https://www.rug.nl/library/open-access/self-archiving-pure/taverne- amendment. Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. An ab initio two-component relativistic method including spin–orbit coupling using the regular approximation S. Faas, J. H. van Lenthe, A. C. Hennum, and J. G. Snijders Citation: J. Chem. Phys. 113, 4052 (2000); doi: 10.1063/1.1288387 View online: https://doi.org/10.1063/1.1288387 View Table of Contents: http://aip.scitation.org/toc/jcp/113/10 Published by the American Institute of Physics Articles you may be interested in Relativistic total energy using regular approximations The Journal of Chemical Physics 101, 9783 (1994); 10.1063/1.467943 Molecular density functional calculations in the regular relativistic approximation: Method, application to coinage metal diatomics, hydrides, fluorides and chlorides, and comparison with first-order relativistic calculations The Journal of Chemical Physics 109, 392 (1998); 10.1063/1.476576 SPOCK.CI: A multireference spin-orbit configuration interaction method for large molecules The Journal of Chemical Physics 124, 124101 (2006); 10.1063/1.2173246 Quasirelativistic theory equivalent to fully relativistic theory The Journal of Chemical Physics 123, 241102 (2005); 10.1063/1.2137315 An improved ab initio relativistic zeroth-order regular approximation correct to order The Journal of Chemical Physics 113, 9957 (2000); 10.1063/1.1323266 Density-functional thermochemistry. III. The role of exact exchange The Journal of Chemical Physics 98, 5648 (1993); 10.1063/1.464913 JOURNAL OF CHEMICAL PHYSICS VOLUME 113, NUMBER 10 8 SEPTEMBER 2000 An ab initio two-component relativistic method including spin–orbit coupling using the regular approximation S. Faas, J. H. van Lenthe,a) and A. C. Hennumb) Theoretical Chemistry Group, Debye Institute, Utrecht University, Padualaan 14, 3584 CH Utrecht, The Netherlands J. G. Snijders Theoretical Chemistry, Materials Science Centre, Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands ͑Received 30 March 2000; accepted 16 June 2000͒ In this paper we present the implementation of the two-component scaled zeroth-order regular approximation ͑ZORA͒ method in the molecular electronic structure package GAMESS-UK.Itisthe first application of this method, which was earlier investigated in the context of density functional theory, in molecular ab initio basis set calculations. The performance of the method is tested in atomic calculations, which we can compare with numerical results, on xenon and radon and in molecular calculations on the molecules AgH, HI, I2, AuH, TlH, and Bi2. In calculations on the I2 molecule we investigated the effect of the different approaches regarding the internal Coulomb matrix used in the ZORA method. For the remaining molecules we computed harmonic frequencies and bond lengths. It is shown that the scaled ZORA approach is a cost-effective alternative to the Dirac–Fock method. © 2000 American Institute of Physics. ͓S0021-9606͑00͒32034-7͔ I. INTRODUCTION basis sets optimized originally for Dirac–Fock calculations, see, e.g., Ref. 15. The inclusion of relativistic effects is essential in the In the present paper we present the first implementation quantum chemical description of compounds containing one and applications of the two-component ZORA Hamiltonian or more heavier elements, see, e.g., Ref. 1. Highly accurate, within an ab initio basis set framework. Unlike the earlier but unfortunately extremely costly, calculations can be per- described scalar ZORA Hamiltonian,7 this Hamiltonian in- formed using the full theory of quantum electrodynamics. cludes spin–orbit coupling. We give a short review of the Due to the computational requirements, these calculations theory followed by details of the implementation of the can only be performed on small atomic systems. To be able method in the GAMESS-UK package.9 Within this implemen- to treat systems of chemical interest it is therefore necessary tation there is room for several approaches regarding the so- to make approximations. called internal Coulomb matrix. An explanation of this con- An accurate method is based on the solution of the four- cept and the different approximations used will be given. component Dirac–Fock equations, the relativistic analog of These approximations are tested in calculations on the I2 Hartree–Fock. This method is still very costly mainly be- molecule. cause of the use of large basis sets needed for a proper de- We test our implementation by calculations on the xenon scription of the small component. An attractive alternative is and radon atoms. These atomic calculations are compared to transform the four-component Dirac equation to a two-, or with numerical ZORA calculations using our ZORA imple- even one-, component formalism. The ZORA ͑zeroth-order mentation in the GRASP2 program.10 regular approximation͒ or CPD method, originally developed In molecular calculations on the diatomics I2, HI, AgH, 2,3 by Chang, Pellisier, and Durand and by Heully et al. and AuH, TlH, and Bi2 we investigate the performance of the later generalized to molecular density functional theory by ZORA Hamiltonian. The quality of the wave functions is 4,5 van Lenthe, Baerends, and Snijders and in its scalar form asserted by comparison of orbital energies (I2) with four- to ab initio methods by the present authors,6,7 performs such component Dirac–Fock results, obtained using the MOLFDIR 11 a transformation. A calculation based on the ZORA method program package. The calculations on the equilibrium ge- can therefore, in principle, be performed using only a large ometries and harmonic frequencies of the molecules HI, component basis, thereby circumventing the use of kineti- AgH, AuH, TlH and Bi2 are used to test the validity of the cally balanced basis sets. Since the ZORA orbitals resemble one-center approximation to the internal Coulomb matrix. the Dirac large components spinors,8 we can make use of Furthermore the results are compared with experiment and full Dirac–Fock results obtained with the DIRAC program.12 The comparison with scalar ZORA calculations unveils the a͒Electronic mail: [email protected] b͒Permanent address: Department of Chemistry, University of Oslo, P.O. effect of the inclusion of spin–orbit coupling in the self- Box 1033 Blindern, N-0315 Oslo, Norway. consistent field ͑SCF͒ procedure. 0021-9606/2000/113(10)/4052/8/$17.004052 © 2000 American Institute of Physics J. Chem. Phys., Vol. 113, No. 10, 8 September 2000 Two-component relativistic method 4053 II. THEORY ␳͑ Ј͒ϭ ␺†͑ ͒␺ ͑ Ј͒ ͑ ͒ r,r ͚ i r i r . 7 Using an expansion in E/(2c2ϪV) on the Foldy– iocc Wouthuysen transformed Dirac–Fock equation one can de- It implies rive the ab initio ZORA and scaled ZORA equations.6 The ϩ Ϸ ͑ ͒ equations, which still contain the large and small compo- J␾␾ J␹␹ J␺␺ . 8 nents of the Dirac spinor, read In the same spirit we assume 1 K␾␾ϷK␺␺ , FZORA␺ ϭ⑀ZORA␺ , FZORA␺ ϭ⑀ZORA ␺ , ͑1͒ i i i S i scaled,i i ͑9͒ K␾␹ ,K␹␾Ϸ0. where ␺ is the two-component ZORA orbital. The ZORA i This leads to the removal of the off-diagonal and small Fock operator is given by component Coulomb and exchange operators. The resulting 1 ZORA Fock operator is given by ZORAϭ͑ ␴ Ϫ ͒ ͑ ␴ Ϫ ͒ F c p K␾␹ 2 ␾␹ c p K␹␾ • ͑2c ϪV ϩK␹␹͒ • c2 c ZORA ␺ F ϭ␴ p ␺ ␴ pϩV ϪK␺␺ ͑10͒ ϩ ␾␹Ϫ ͑ ͒ • 2c2ϪV • c Vc K␾␾ 2 c and the scaling factor by with ␺ϭ ϩ ͑ ͒ Sϭ ϩ͗␺ ͉͑ ␴ Ϫ ͒ Vc Vnuc J␺␺ 11 1 i c •p K␾␹ and the scaling factor 1 ϫ ͑ ␴ Ϫ ͉͒␺ ͘ ͑ ͒ ͑ 2Ϫ ␾␹ϩ ͒2 c •p K␹␾ i . 3 c2 2c Vc K␹␹ Sϭ1ϩ͗␺ ͉͑␴ p͒ ␺ ͑␴ p͉͒␺ ͘. ͑12͒ i • ͑2c2ϪV ͒2 • i We use the abbreviation c ␾␹ We can now perform two-component ZORA calcula- V ϭV ϩJ␾␾ϩJ␹␹ . ͑4͒ c nuc tions using only a large component basis set. The large and small components of the original Dirac ␾ ␹ ␺ spinor are denoted by i and i . The relation between i , ␾ ␹ III. IMPLEMENTATION i , and i is determinated by the Foldy–Wouthuysen transformation6 and has become energy independent by the The two-component ZORA method is implemented in a use of the expansion in E/(2c2ϪV).
Recommended publications
  • Arxiv:1710.00259V1 [Physics.Chem-Ph] 30 Sep 2017 a Relativistically Correct Electron Interaction
    One-step treatment of spin-orbit coupling and electron correlation in large active spaces Bastien Mussard1, ∗ and Sandeep Sharma1, y 1Department of Chemistry and Biochemistry, University of Colorado Boulder, Boulder, CO 80302, USA In this work we demonstrate that the heat bath configuration interaction (HCI) and its semis- tochastic extension can be used to treat relativistic effects and electron correlation on an equal footing in large active spaces to calculate the low energy spectrum of several systems including halogens group atoms (F, Cl, Br, I), coinage atoms (Cu, Au) and the Neptunyl(VI) dioxide radical. This work demonstrates that despite a significant increase in the size of the Hilbert space due to spin symmetry breaking by the spin-orbit coupling terms, HCI retains the ability to discard large parts of the low importance Hilbert space to deliver converged absolute and relative energies. For instance, by using just over 107 determinants we get converged excitation energies for Au atom in an active space containing (150o,25e) which has over 1030 determinants. We also investigate the accuracy of five different two-component relativistic Hamiltonians in which different levels of ap- proximations are made in deriving the one-electron and two-electrons Hamiltonians, ranging from Breit-Pauli (BP) to various flavors of exact two-component (X2C) theory. The relative accuracy of the different Hamiltonians are compared on systems that range in atomic number from first row atoms to actinides. I. INTRODUCTION can become large and it is more appropriate to treat them on an equal footing with the spin-free terms and electron Relativistic effects play an important role in a correlation.
    [Show full text]
  • Jaguar 5.5 User Manual Copyright © 2003 Schrödinger, L.L.C
    Jaguar 5.5 User Manual Copyright © 2003 Schrödinger, L.L.C. All rights reserved. Schrödinger, FirstDiscovery, Glide, Impact, Jaguar, Liaison, LigPrep, Maestro, Prime, QSite, and QikProp are trademarks of Schrödinger, L.L.C. MacroModel is a registered trademark of Schrödinger, L.L.C. To the maximum extent permitted by applicable law, this publication is provided “as is” without warranty of any kind. This publication may contain trademarks of other companies. October 2003 Contents Chapter 1: Introduction.......................................................................................1 1.1 Conventions Used in This Manual.......................................................................2 1.2 Citing Jaguar in Publications ...............................................................................3 Chapter 2: The Maestro Graphical User Interface...........................................5 2.1 Starting Maestro...................................................................................................5 2.2 The Maestro Main Window .................................................................................7 2.3 Maestro Projects ..................................................................................................7 2.4 Building a Structure.............................................................................................9 2.5 Atom Selection ..................................................................................................10 2.6 Toolbar Controls ................................................................................................11
    [Show full text]
  • CHEM:4480 Introduction to Molecular Modeling
    CHEM:4480:001 Introduction to Molecular Modeling Fall 2018 Instructor Dr. Sara E. Mason Office: W339 CB, Phone: (319) 335-2761, Email: [email protected] Lecture 11:00 AM - 12:15 PM, Tuesday/Thursday. Primary Location: W228 CB. Please note that we will often meet in one of the Chemistry Computer Labs. Notice about class being held outside of the primary location will be posted to the course ICON site by 24 hours prior to the start of class. Office Tuesday 12:30-2 PM (EXCEPT for DoC faculty meeting days 9/4, 10/2, 10/9, 11/6, Hour and 12/4), Thursday 12:30-2, or by appointment Department Dr. James Gloer DEO Administrative Office: E331 CB Administrative Phone: (319) 335-1350 Administrative Email: [email protected] Text Instead of a course text, assigned readings will be given throughout the semester in forms such as journal articles or library reserves. Website http://icon.uiowa.edu Course To develop practical skills associated with chemical modeling based on quantum me- Objectives chanics and computational chemistry such as working with shell commands, math- ematical software, and modeling packages. We will also work to develop a basic understanding of quantum mechanics, approximate methods, and electronic struc- ture. Technical computing, pseudopotential generation, density functional theory software, (along with other optional packages) will be used hands-on to gain experi- ence in data manipulation and modeling. We will use both a traditional classroom setting and hands-on learning in computer labs to achieve course goals. Course Topics • Introduction: It’s a quantum world! • Dirac notation and matrix mechanics (a.k.a.
    [Show full text]
  • US DOE SC ASCR FY11 Software Effectiveness SC GG 3.1/2.5.2 Improve Computational Science Capabilities
    US DOE SC ASCR FY11 Software Effectiveness SC GG 3.1/2.5.2 Improve Computational Science Capabilities K. J. Roche High Performance Computing Group, Pacific Northwest National Laboratory Nuclear Theory Group, Department of Physics, University of Washington Presentation to ASCAC, Washington, D.C. , November 2, 2011 Tuesday, November 1, 2011 1 LAMMPS Paul Crozier, Steve Plimpton, Mark Brown, Christian Trott OMEN, NEMO 5 Gerhard Klimeck, Mathieu Luisier, Sebastian Steiger, Michael Povolotskyi, Hong-Hyun Park, Tillman Kubis OSIRIS Warren Mori, Ricardo Fonseca, Asher Davidson, Frank Tsung, Jorge Vieira, Frederico Fiuza, Panagiotis Spentzouris eSTOMP Steve Yabusaki, Yilin Fang, Bruce Palmer, Manojkumar Krishnan Rebecca Hartman-Baker Ricky Kendall Don Maxwell Bronson Messer Vira j Paropkari David Skinner Jack Wells Cary Whitney Rice HPC Toolkit group DOE ASCR, OLCF and NERSC staf Tuesday, November 1, 2011 2 • Metric Statement, Processing • FY11 Applications Intro Problems Enhancements Results • FY12 Nominations Tuesday, November 1, 2011 3 US OMB PART DOE SC ASCR Annual Goal with Quarterly Updates (SC GG 3.1/2.5.2) Improve computational science capabilities, defined as the average annual percentage increase in the computational effectiveness (either by simulating the same problem in less time or simulating a larger problem in the same time) of a subset of application codes. To those ‘on the clock’ with this work, it means more than just satisfying the language of this metric. Tuesday, November 1, 2011 4 accept • COMPLEXITY LP LR PROBLEMS M M M • reject • ALGORITHMS • MACHINES Measured time for machine M to generate the language of the problem plus time to generate the language of the result plus the time to accept or reject the language of the result.
    [Show full text]
  • Efficient Two-Component Relativistic Method to Obtain Electronic
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DSpace at Waseda University Efficient Two-Component Relativistic Method to Obtain Electronic and Molecular Structures of Heavy-Element Systems ͷిࢠঢ়ଶ͓Αͼ෼ࢠߏ଄ͷͨΊͷܥॏݩૉ ޮ཰తͳ 2 ੒෼૬ର࿦๏ February 2017 Waseda University Graduate School of Advanced Science and Engineering Department of Chemistry and Biochemistry, Research on Electronic State Theory Yuya NAKAJIMA தౢɹ༟໵ Contents Chapter 1 General introduction 1 References . ................................ 6 Chapter 2 Theoretical background 7 2.1 Dirac Hamiltonian . ....................... 7 2.2 The IODKH method ....................... 9 2.3 The LUT scheme . ........................ 12 2.4 Spin-free and spin-dependent formalisms . ......... 14 2.5 The FCP method . ........................ 16 2.6 The GHF method . ........................ 19 2.7 The Analytical energy derivative for the GHF method . 21 References . ................................ 24 Chapter 3 Analytical energy gradient for spin-free infinite-order Douglas–Kroll–Hess method with local unitary transfor- mation 25 3.1 Introduction . .......................... 25 3.2 Theory and implementation . ................. 27 3.2.1 Energy gradient for IODKH . ........... 27 3.2.2 Analytical derivative for the space transformation matrices . ......................... 30 3.2.3 Energy gradient for LUT-IODKH . .......... 32 3.2.4 Implementation . ................... 33 i 3.3 Numerical assessments . .................. 34 3.3.1 Computational details . ................ 34 3.3.2 Numerical gradient values ............... 37 3.3.3 Accuracies of IODKH/C and LUT-IODKH/C methods 38 3.3.4 Computational cost of the LUT scheme ........ 45 3.3.5 Metal complexes . ................... 47 3.3.6 Heavier analogues of ethylene . ........... 48 3.3.7 Harmonic frequencies of diatomic molecules . 49 3.4 Conclusion .
    [Show full text]
  • The Electron Affinity of the Uranium Atom
    The electron affinity of the uranium atom Cite as: J. Chem. Phys. 154, 224307 (2021); https://doi.org/10.1063/5.0046315 Submitted: 02 February 2021 . Accepted: 18 May 2021 . Published Online: 10 June 2021 Sandra M. Ciborowski, Gaoxiang Liu, Moritz Blankenhorn, Rachel M. Harris, Mary A. Marshall, Zhaoguo Zhu, Kit H. Bowen, and Kirk A. Peterson ARTICLES YOU MAY BE INTERESTED IN Ultrahigh sensitive transient absorption spectrometer Review of Scientific Instruments 92, 053002 (2021); https://doi.org/10.1063/5.0048115 A dual-magneto-optical-trap atom gravity gradiometer for determining the Newtonian gravitational constant Review of Scientific Instruments 92, 053202 (2021); https://doi.org/10.1063/5.0040701 How accurate is the determination of equilibrium structures for van der Waals complexes? The dimer N2O⋯CO as an example The Journal of Chemical Physics 154, 194302 (2021); https://doi.org/10.1063/5.0048603 J. Chem. Phys. 154, 224307 (2021); https://doi.org/10.1063/5.0046315 154, 224307 © 2021 Author(s). The Journal ARTICLE of Chemical Physics scitation.org/journal/jcp The electron affinity of the uranium atom Cite as: J. Chem. Phys. 154, 224307 (2021); doi: 10.1063/5.0046315 Submitted: 2 February 2021 • Accepted: 18 May 2021 • Published Online: 10 June 2021 Sandra M. Ciborowski,1 Gaoxiang Liu,1 Moritz Blankenhorn,1 Rachel M. Harris,1 Mary A. Marshall,1 Zhaoguo Zhu,1 Kit H. Bowen,1,a) and Kirk A. Peterson2,a) AFFILIATIONS 1 Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, USA 2 Department of Chemistry, Washington State University, Pullman, Washington 99162, USA a)Authors to whom correspondence should be addressed: [email protected] and [email protected] ABSTRACT The results of a combined experimental and computational study of the uranium atom are presented with the aim of determining its electron affinity.
    [Show full text]
  • Nwchem User Documentation Release 4.0.1
    NWChem User Documentation Release 4.0.1 High Performance Computational Chemistry Group W.R. Wiley Environmental Molecular Sciences Laboratory Pacific Northwest National Laboratory P.O. Box 999, Richland, WA 99352 January 2001 2 DISCLAIMER This material was prepared as an account of work sponsored by an agency of the United States Government. Neither the United States Government nor the United States Department of Energy, nor Battelle, nor any of their employees, MAKES ANY WARRANTY, EXPRESS OR IMPLIED, OR ASSUMES ANY LEGAL LIABILITY OR RESPON- SIBILITY FOR THE ACCURACY, COMPLETENESS, OR USEFULNESS OF ANY INFORMATION, APPARA- TUS, PRODUCT, SOFTWARE, OR PROCESS DISCLOSED, OR REPRESENTS THAT ITS USE WOULD NOT INFRINGE PRIVATELY OWNED RIGHTS. LIMITED USE This software (including any documentation) is being made available to you for your internal use only, solely for use in performance of work directly for the U.S. Federal Government or work under contracts with the U.S. Department of Energy or other U.S. Federal Government agencies. This software is a version which has not yet been evaluated and cleared for commercialization. Adherence to this notice may be necessary for the author, Battelle Memorial Institute, to successfully assert copyright in and commercialize this software. This software is not intended for duplication or distribution to third parties without the permission of the Manager of Software Products at Pacific Northwest National Laboratory, Richland, Washington, 99352. ACKNOWLEDGMENT This software and its documentation were produced with Government support under Contract Number DE-AC06- 76RLO-1830 awarded by the United States Department of Energy. The Government retains a paid-up non-exclusive, irrevocable worldwide license to reproduce, prepare derivative works, perform publicly and display publicly by or for the Government, including the right to distribute to other Government contractors.
    [Show full text]
  • Scale QM/MM-MD Simulations and Its Application to Biomolecular Systems
    PUPIL: a Software Integration System for Multi- scale QM/MM-MD Simulations and its Application to Biomolecular Systems Juan Torras, 1 * B.P. Roberts, 2 G.M. Seabra, 3and S.B. Trickey 4 * 1Department of Chemical Engineering, EEI, Universitat Politècnica de Catalunya, Av. Pla de la Massa 8, Igualada 08700, Spain 2 Centre for eResearch, The University of Auckland, Private Bag 92019, Auckland 1142 New Zealand 3Departamento de Química Fundamental, Universidade Federal de Pernambuco, Cidade Universitária, Recife, Pernambuco CEP 50.740-540, Brazil 4Department of Physics, Department of Chemistry, and Quantum Theory Project, Univ. of Florida, Gainesville Florida 32611-8435, USA * Corresponding Authors: [email protected] and [email protected] 1 Abstract PUPIL (Program for User Package Interfacing and Linking) implements a distinctive multi-scale approach to hybrid quantum mechanical/molecular mechanical molecular dynamics (QM/MM-MD) simulations. Originally developed to interface different external programs for multi-scale simulation with applications in the materials sciences, PUPIL is finding increasing use in the study of complex biological systems. Advanced MD techniques from the external packages can be applied readily to a hybrid QM/MM treatment in which the forces and energy for the QM region can be computed by any of the QM methods available in any of the other external packages. Here we give a survey of PUPIL design philosophy, main features, and key implementation decisions, with an orientation to biomolecular simulation. We discuss recently implemented features which enable highly realistic simulations of complex biological systems which have more than one active site that must be treated concurrently.
    [Show full text]
  • GPW and GAPW
    Zurich, July 12th 2017 CP2K : GPW and GAPW Marcella Iannuzzi Department of Chemistry, University of Zurich http://www.cp2k.org Basis Set Representation KS matrix formulation when the wavefunction is expanded into a basis System size {Nel, M}, P [MxM], C [MxN] ⇥i(r)= Cαiφα(r) α Variational n(r)= fiCαiC⇥iφα(r)φ⇥(r)= P⇥φα(r)φ⇥(r) principle i ⇥ ⇥ Constrained minimisation P = PSP problem KS total energy E[ ψ ]=T [ ψ ]+Eext[n]+EH[n]+EXC[n]+EII { i} { i} Matrix formulation of the KS equations H xc K(C)C = T(C)+Vext(C)+E (C)+E (C)=SCε 2 Self-consistency SCF Method Generate a starting density ⇒ ninit Input 3D Coordinates init Generate the KS potential ⇒ VKS of atomic nuclei Solve the KS equations ⇒ , ψ � Initial Guess Molecular Orbitals Fock Matrix (1-electron vectors) Calculation 1 Calculate the new density ⇒ n 1 New KS potential ⇒ VKS Fock Matrix Diagonalization New orbitals and energies ⇒ �1 , ψ Calculate 2 Properties Yes SCF No New density ⇒ n Converged? End ….. until self-consistency 3to required precision Classes of Basis Sets Extended basis sets, PW : condensed matter Localised basis sets centred at atomic positions, GTO Idea of GPW: auxiliary basis set to represent the density Mixed (GTO+PW) to take best of two worlds, GPW Augmented basis set, GAPW: separated hard and soft density domains 4 GPW Ingredients linear scaling KS matrix computation for GTO Gaussian basis sets (many terms analytic) 2 mx my mz ↵mr ⇥i(r)= Cαiφα(r) φ↵(r)= dm↵gm(r) gm(r)=x y z e− α m X Pseudo potentials Plane waves auxiliary basis for Coulomb integrals Regular grids and FFT for the density Sparse matrices (KS and P) Efficient screening G.
    [Show full text]
  • Lecture 2: Standard Software and Visualization Tools
    The underlying physical laws necessary for the mathematical theory of a large part of physics and the whole of chemistry are thus completely known, and the difficulty is only that the exact application of these laws leads to equations much too complicated to be soluble. P. A. M. Dirac, 1929. Lecture 2: standard software and visualization tools A brief overview of simulation and visualization software in current use Dr Ilya Kuprov, University of Southampton, 2012 (for all lecture notes and video records see http://spindynamics.org) Expert level packages: Gaussian Notable Pro Notable Contra Excellent internal coordinate module supporting very Very expensive, carries severe sophisticated scans, constraints and licensing restrictions. energy surface analysis. Does not scale to more than 4 Excellent solvation and reaction (CISD) to 32 (DFT) cores, even on field support. shared memory systems. Very user-friendly, clear and A real pain to install. forgiving input syntax. Gaussian is not the most %Mem=16GB CPU-efficient package in exis- %NProcShared=8 #p opt=tight rb3lyp/cc-pVDZ scf=(tight,dsymm) tence, but it takes much less integral=(grid=ultrafine) time to set up a Gaussian job than a job for any other Flavin anion geometry optimization expert level package. -1 1 N.B.: CPU time is £0.06 an C 0.00000000 0.00000000 0.00000000 hour, brain time is £25+ an C 0.00000000 0.00000000 1.41658511 C 1.23106864 0.00000000 2.09037416 hour. C 2.43468421 0.00000000 1.39394037 http://www.gaussian.com/g_prod/g09_glance.htm Expert level packages: GAMESS Notable Pro Notable Contra Three distinct code branches (UK, US, PC) with Excellent configuration interaction module.
    [Show full text]
  • Relativistic Coupled Cluster Theory - in Molecular Properties and in Electronic Structure Avijit Shee
    Relativistic coupled cluster theory - in molecular properties and in electronic structure Avijit Shee To cite this version: Avijit Shee. Relativistic coupled cluster theory - in molecular properties and in electronic structure. Mechanics of materials [physics.class-ph]. Université Paul Sabatier - Toulouse III, 2016. English. NNT : 2016TOU30053. tel-01515345 HAL Id: tel-01515345 https://tel.archives-ouvertes.fr/tel-01515345 Submitted on 27 Apr 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 5)µ4& &OWVFEFMPCUFOUJPOEV %0$503"5%&-6/*7&34*5²%&506-064& %ÏMJWSÏQBS Université Toulouse 3 Paul Sabatier (UT3 Paul Sabatier) 1SÏTFOUÏFFUTPVUFOVFQBS Avijit Shee le 26th January, 2016 5JUSF Relativistic Coupled Cluster Theory – in Molecular Properties and in Electronic Structure ²DPMF EPDUPSBMF et discipline ou spécialité ED SDM : Physique de la matière - CO090 6OJUÏEFSFDIFSDIF Laboratoire de Chimie et Physique Quantiques (UMR5626) %JSFDUFVSUSJDF T EFʾÒTF Trond Saue (Directeur) Timo Fleig (Co-Directeur) Jury : Trygve Helgaker Professeur Rapporteur Jürgen Gauss Professeur Rapporteur Valerie Vallet Directeur de Recherche Examinateur Laurent Maron Professeur Rapporteur Timo Fleig Professeur Directeur Trond Saue Directeur de Recherche Directeur A Thesis submitted for the degree of Doctor of Philosophy Relativistic Coupled Cluster Theory { in Molecular Properties and in Electronic Structure Avijit Shee Universit´eToulouse III { Paul Sabatier Contents Acknowledgements iii 1.
    [Show full text]
  • GAMESS-UK USER's GUIDE and REFERENCE MANUAL Version 8.0
    CONTENTS i Computing for Science (CFS) Ltd., CCLRC Daresbury Laboratory. Generalised Atomic and Molecular Electronic Structure System GAMESS-UK USER'S GUIDE and REFERENCE MANUAL Version 8.0 June 2008 PART 4. DATA INPUT - CLASS 2 Directives M.F. Guest, H.J.J. van Dam, J. Kendrick, J.H. van Lenthe, P. Sherwood and G. D. Fletcher Copyright (c) 1993-2008 Computing for Science Ltd. This document may be freely reproduced provided that it is reproduced unaltered and in its entirety. Contents 1 Introduction1 2 RUNTYPE1 2.1 Notes on RUNTYPE Specification........................ 2 3 SCFTYPE5 4 Directives defining the wavefunction6 4.1 SCF Wavefunctions: The OPEN Directive.................... 6 4.2 GVB Wavefunctions................................ 10 4.3 CASSCF wavefunctions: The CONFIG Directive................. 12 CONTENTS ii 5 Directives Controlling Wavefunction Convergence 16 5.1 MAXCYC..................................... 16 5.2 THRESHOLD................................... 16 6 SCF Convergence - Default 17 6.1 LEVEL....................................... 17 6.1.1 Closed-shell RHF Calculations...................... 17 6.1.2 Open-shell RHF and GVB Calculations.................. 18 6.1.3 Open-shell UHF Calculations....................... 19 6.2 Core-Hole States.................................. 20 6.3 DIIS........................................ 21 6.4 CONV....................................... 23 6.5 AVERAGE..................................... 23 6.6 SMEAR...................................... 24 6.7 CASSCF Convergence..............................
    [Show full text]