Final Project Report (To Be Submitted by 20Th September 2018)
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The Evolution and Genomic Basis of Beetle Diversity
The evolution and genomic basis of beetle diversity Duane D. McKennaa,b,1,2, Seunggwan Shina,b,2, Dirk Ahrensc, Michael Balked, Cristian Beza-Bezaa,b, Dave J. Clarkea,b, Alexander Donathe, Hermes E. Escalonae,f,g, Frank Friedrichh, Harald Letschi, Shanlin Liuj, David Maddisonk, Christoph Mayere, Bernhard Misofe, Peyton J. Murina, Oliver Niehuisg, Ralph S. Petersc, Lars Podsiadlowskie, l m l,n o f l Hans Pohl , Erin D. Scully , Evgeny V. Yan , Xin Zhou , Adam Slipinski , and Rolf G. Beutel aDepartment of Biological Sciences, University of Memphis, Memphis, TN 38152; bCenter for Biodiversity Research, University of Memphis, Memphis, TN 38152; cCenter for Taxonomy and Evolutionary Research, Arthropoda Department, Zoologisches Forschungsmuseum Alexander Koenig, 53113 Bonn, Germany; dBavarian State Collection of Zoology, Bavarian Natural History Collections, 81247 Munich, Germany; eCenter for Molecular Biodiversity Research, Zoological Research Museum Alexander Koenig, 53113 Bonn, Germany; fAustralian National Insect Collection, Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT 2601, Australia; gDepartment of Evolutionary Biology and Ecology, Institute for Biology I (Zoology), University of Freiburg, 79104 Freiburg, Germany; hInstitute of Zoology, University of Hamburg, D-20146 Hamburg, Germany; iDepartment of Botany and Biodiversity Research, University of Wien, Wien 1030, Austria; jChina National GeneBank, BGI-Shenzhen, 518083 Guangdong, People’s Republic of China; kDepartment of Integrative Biology, Oregon State -
Deep Divergence and Rapid Evolutionary Rates in Gut-Associated Acetobacteraceae of Ants Bryan P
Brown and Wernegreen BMC Microbiology (2016) 16:140 DOI 10.1186/s12866-016-0721-8 RESEARCH ARTICLE Open Access Deep divergence and rapid evolutionary rates in gut-associated Acetobacteraceae of ants Bryan P. Brown1,2 and Jennifer J. Wernegreen1,2* Abstract Background: Symbiotic associations between gut microbiota and their animal hosts shape the evolutionary trajectories of both partners. The genomic consequences of these relationships are significantly influenced by a variety of factors, including niche localization, interaction potential, and symbiont transmission mode. In eusocial insect hosts, socially transmitted gut microbiota may represent an intermediate point between free living or environmentally acquired bacteria and those with strict host association and maternal transmission. Results: We characterized the bacterial communities associated with an abundant ant species, Camponotus chromaiodes. While many bacteria had sporadic distributions, some taxa were abundant and persistent within and across ant colonies. Specially, two Acetobacteraceae operational taxonomic units (OTUs; referred to as AAB1 and AAB2) were abundant and widespread across host samples. Dissection experiments confirmed that AAB1 and AAB2 occur in C. chromaiodes gut tracts. We explored the distribution and evolution of these Acetobacteraceae OTUs in more depth. We found that Camponotus hosts representing different species and geographical regions possess close relatives of the Acetobacteraceae OTUs detected in C. chromaiodes. Phylogenetic analysis revealed that AAB1 and AAB2 join other ant associates in a monophyletic clade. This clade consists of Acetobacteraceae from three ant tribes, including a third, basal lineage associated with Attine ants. This ant-specific AAB clade exhibits a significant acceleration of substitution rates at the 16S rDNA gene and elevated AT content. -
Genome Sequencing of Rhinorhipus Lawrence Exposes an Early Branch
Kusy et al. Frontiers in Zoology (2018) 15:21 https://doi.org/10.1186/s12983-018-0262-0 RESEARCH Open Access Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera Dominik Kusy1, Michal Motyka1, Carmelo Andujar2, Matej Bocek1, Michal Masek1, Katerina Sklenarova1, Filip Kokas3, Milada Bocakova1, Alfried P. Vogler4,5 and Ladislav Bocak1* Abstract Background: Rhinorhipidae Lawrence, 1988 is an enigmatic beetle family represented by a single species, Rhinorhipus tamborinensis Lawrence, 1988, from Australia, with poorly established affinities near the superfamily Elateroidea (click beetles, soldier beetles and fireflies) or the more inclusive series (infraorder) Elateriformia. Its evolutionary position may inform the basal relationships of the suborder Polyphaga, the largest clade of Coleoptera. Results: We analyzed four densely sampled DNA datasets of major coleopteran lineages for mitogenomes, rRNA genes and single copy nuclear genes. Additionally, genome sequencing was used for incorporation of R. tamborinensis into a set of 4220 orthologs for 24 terminals representing 12 polyphagan superfamilies. Topologies differed to various degrees, but all consistently refute the proposed placement of Rhinorhipidae in Elateroidea and instead indicate either sister relationships with other Elateriformia, frequently together with Nosodendridae, another divergent small family hitherto placed in Derodontoidea, or in an isolated position among the deepest lineages of Polyphaga. The phylogenomic analyses recovered Rhinorhipus in a sister position to all other Elateriformia composed of five superfamilies. Therefore, we erect the new superfamily Rhinorhipoidea Lawrence, 1988, stat. Nov.,with the type-family Rhinorhipidae. The origins of the Rhinorhipidae were dated to the Upper Triassic/Lower Jurassic at the very early phase of polyphagan diversification. -
Distributional Notes on Some Nosodendridae (Coleoptera) - XXII
Natura Somogyiensis 35: 11-14. Ka pos vár, 2020 DOI:10.24394/NatSom.2020.35.11 Submitted: 13.06, 2020; Accepted: 30,06, 2020; Published: 10.07, 2020 www.smmi.hu/termtud/ns/ns.htm Distributional notes on some Nosodendridae (Coleoptera) - XXII. A new species of Nosodendron (Nosodendron) from India Jiří Háva Forestry and Game Management Research Institute, Strnady 136, CZ-252 02 Praha 5 - Zbraslav, Czech Republic e-mail: [email protected] Háva, J: Distributional notes on some Nosodendridae (Coleoptera) - XXII. A new species of Nosodendron (Nosodendron) from India. Abstract: A new species, Nosodendron (Nosodendron) nathani sp. nov., from India, the Kerala State, is described, illustrated and compared with a similar species, Nosodendron (N.) disjectum Champion, 1923. Keywords: taxonomy, description, new species, Coleoptera, Nosodendridae, Nosodendron, India. Introduction The small family Nosodendridae (Coleoptera) recently contains 2 genera and 104 spe- cies (Háva 2019, 2020). The family Nosodendridae was placed to Derodontoidea by Bouchard et al. (2011), McKenna et al. (2019) placed the family Nosodendridae to Nosodendroidea. A new species of the genus Nosodendron from the Kerala State belong- ing to the nominotypical subgenus is described here. Material and methods Locality labels of the material mentioned are cited in the original version. Specimens of the presently described species are provided with red, printed labels with the text as follows: „HOLOTYPE [or PARATYPE] Nosodendron (N.) nathani sp. nov. Jiří Háva det. 2020”. Type material is deposited in the following collection: JHAC Jiří Háva, Private Entomological Laboratory and Collection, Prague-west, Czech Republic. ISSN 1587-1908 (Print); ISSN 2062-9990 (Online) 12 Natura Somogyiensis Results Nosodendron (Nosodendron) nathani sp. -
Curriculum Vitae
Stephen C. Pratt: Curriculum vitae STEPHEN C. PRATT Curriculum vitae 2 May 2019 School of Life Sciences Arizona State University P.O. Box 874501 Tempe AZ 85287-4501 E-mail: [email protected] Tel: (480) 727-9425 http://pratt.lab.asu.edu EDUCATION: 1997 Ph.D., Cornell University, Neurobiology and Behavior. 1988 B.A., Harvard University, Biology. APPOINTMENTS 2019–present Professor, School of Life Sciences, Arizona State University. 2012–2019 Associate Professor, School of Life Sciences, Arizona State University. 2006–2012 Assistant Professor, School of Life Sciences, Arizona State University. 2001–2006 Lecturer and Postdoctoral Scientist, Department of Ecology and Evolutionary Biology, Princeton University. 1998–2000 Postdoctoral Fellow, Department of Biology, University of Bath. 1997–1998 Postdoctoral Scientist, Whitehead Institute for Biomedical Research/MIT Center for Genome Research. RESEARCH FUNDING Current research support Dates Title Source Role Value 2018– BISECT: Biologically-inspired swarm DARPA PI of ASU $259,999 2020 perception and control technology Phase II section 2016– Emergent computation in collective NSF Co-I $595,520 2019 decision making by the crevice-dwelling rock ant Temnothorax rugatulus 2017– BioSwarm supplement: A methodology for DARPA PI of ASU $175,000 2018 modeling swarm behavioral dynamics from section local observations 2017– BioSwarm: Bio-inspired swarming DARPA PI of ASU $193,078 2018 section 1 Stephen C. Pratt: Curriculum vitae Completed research support Dates Title Source Role Value 2017 BISECT: Biologically-inspired -
The Consequences of Buffelgrass Pasture Development for Biodiversity in the Southern Sonoran Desert
The Consequences of Buffelgrass Pasture Development for Biodiversity in the Southern Sonoran Desert Item Type text; Electronic Dissertation Authors Franklin, Kimberly Anne Publisher The University of Arizona. Rights Copyright © is held by the author. Digital access to this material is made possible by the University Libraries, University of Arizona. Further transmission, reproduction or presentation (such as public display or performance) of protected items is prohibited except with permission of the author. Download date 24/09/2021 13:06:37 Link to Item http://hdl.handle.net/10150/195818 THE CONSEQUENCES OF BUFFELGRASS PASTURE DEVELOPMENT FOR BIODIVERSITY IN THE SOUTHERN SONORAN DESERT by Kimberly Anne Franklin _____________________ A Dissertation Submitted to the Faculty of the GRADUATE INTERDISCIPLINARY PROGRAM IN INSECT SCIENCE In Partial Fulfillment of the Requirements For the Degree of DOCTOR OF PHILOSOPHY In the Graduate College THE UNIVERSITY OF ARIZONA 2009 2 THE UNIVERSITY OF ARIZONA GRADUATE COLLEGE As members of the Dissertation Committee, we certify that we have read the dissertation prepared by Kimberly Franklin entitled The Consequences of Buffelgrass Pasture Development for Biodiversity in the Southern Sonoran Desert and recommend that it be accepted as fulfilling the dissertation requirement for the Degree of Doctor of Philosophy ____________________________________________________________Date: 5/1/09 Therese Markow ____________________________________________________________Date: 5/1/09 Fransciso Molina-Freaner ___________________________________________________________Date: -
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Ecological and Evolutionary Factors Shaping Animal-Bacterial Symbioses: Insights from Insects & Gut Symbionts by Bryan Paul Brown Environment Duke University Date:_______________________ Approved: ___________________________ Jennifer Wernegreen, Supervisor ___________________________ Dana Hunt ___________________________ John Rawls ___________________________ Lawrence David Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of the Environment in the Graduate School of Duke University 2017 i v ABSTRACT Ecological and Evolutionary Factors Shaping Animal-Bacterial Symbioses: Insights from Insects & Gut Symbionts by Bryan Paul Brown Environment Duke University Date:_______________________ Approved: ___________________________ Jennifer Wernegreen, Supervisor ___________________________ Dana Hunt ___________________________ John Rawls ___________________________ Lawrence David An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of the Environment in the Graduate School of Duke University 2017 i v Copyright by Bryan Paul Brown 2017 Abstract Animal bacterial symbioses are pervasive and underlie the success of many groups. Here, I study ecological and evolutionary factors that shape interactions between a host and gut associates. In this dissertation, I interrogate interactions between the carpenter ant (Camponotus) and its associated gut microbiota to ask the following questions: What -
Fossil Perspectives on the Evolution of Insect Diversity
FOSSIL PERSPECTIVES ON THE EVOLUTION OF INSECT DIVERSITY Thesis submitted by David B Nicholson For examination for the degree of PhD University of York Department of Biology November 2012 1 Abstract A key contribution of palaeontology has been the elucidation of macroevolutionary patterns and processes through deep time, with fossils providing the only direct temporal evidence of how life has responded to a variety of forces. Thus, palaeontology may provide important information on the extinction crisis facing the biosphere today, and its likely consequences. Hexapods (insects and close relatives) comprise over 50% of described species. Explaining why this group dominates terrestrial biodiversity is a major challenge. In this thesis, I present a new dataset of hexapod fossil family ranges compiled from published literature up to the end of 2009. Between four and five hundred families have been added to the hexapod fossil record since previous compilations were published in the early 1990s. Despite this, the broad pattern of described richness through time depicted remains similar, with described richness increasing steadily through geological history and a shift in dominant taxa after the Palaeozoic. However, after detrending, described richness is not well correlated with the earlier datasets, indicating significant changes in shorter term patterns. Corrections for rock record and sampling effort change some of the patterns seen. The time series produced identify several features of the fossil record of insects as likely artefacts, such as high Carboniferous richness, a Cretaceous plateau, and a late Eocene jump in richness. Other features seem more robust, such as a Permian rise and peak, high turnover at the end of the Permian, and a late-Jurassic rise. -
The Family Nosodendridae (Coleoptera: Derodontoidea) of Japan and Taiwan
Japanese Journal of Systematic Entomology, 21 (1): 35–58. May 30, 2015. The Family Nosodendridae (Coleoptera: Derodontoidea) of Japan and Taiwan Hiroyuki YOSHITOMI1), Toshio KISHIMOTO2)* and Chi-Feng LEE3) 1)Ehime University Museum, Bunkyo 3, Matsuyama, 790-8577 Japan E-mail: [email protected] 2)Japan Wildlife Research Center, Koutoubashi 3-3-7, Sumida-ku, Tokyo, 130-8606 Japan * Present address: Museum of Natural and Environmental History, Shizuoka, Ooya 5762, Suruga-ku, Shizuoka, 422-8017 Japan 3)Applied Zoology Division, Taiwan Agricultural Research Institute, 189 Chung-Cheng Road, Wufeng 41362, Taichung, Taiwan E-mail: [email protected] Abstract The Japanese and Taiwanese species of the genus Nosodendron is revised. The genus is subdivided into two subgenera: Nosodendron and Dendrodipnis. Four species are recognized, including two new species, Nosodendron (D.) ogasawaraense and N. (D.) taiwanense, described in this paper. The larvae of three species, N. (N.) asiaticum, N. (D.) coenosum, and N. (D.) ogasawar- aense, are described. Key words: new species, larvae, distribution, associated plants, filter feeding. Introduction recorded (Háva, 2014), and the adults and larvae of these species had not been reviewed. In the present paper, we The adaptation to aquatic habitats by members of review the Japanese and Taiwanese species of the genus Coleoptera evolved independently in some clades, and Nosodendron, with biological notes and descriptions of the there are various degrees of adaptation (Jäch, 1998). The larval stages. families of water beetles (= water adapted beetles) are known from three suborders: Myxophaga (all families), Adephaga Materials and Methods (mainly Dytiscoidea), and Polyphaga (part of the family in Hydrophiloidea, Byrrhoidea, Scirtoidea, and so on). -
Dissertation Combined-Review Edits
UC Riverside UC Riverside Electronic Theses and Dissertations Title Effects of Pharmaceuticals in Reclaimed Water on Insects in Different Feeding Guilds Permalink https://escholarship.org/uc/item/2bn1v36b Author Pennington, Marcus John Publication Date 2017 License https://creativecommons.org/licenses/by-nc-nd/4.0/ 4.0 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California UNIVERSITY OF CALIFORNIA RIVERSIDE Effects of Pharmaceuticals in Reclaimed Water on Insects in Different Feeding Guilds A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Environmental Toxicology by Marcus John Pennington September 2017 Dissertation Committee: Dr. John Trumble, Chairperson Dr. Jay Gan Dr. Quinn McFrederick Copyright by Marcus John Pennington 2017 The Dissertation of Marcus John Pennington is approved: _____________________________________________________ _____________________________________________________ _____________________________________________________ Committee Chairperson University of California, Riverside Acknowledgements To my major professor, Dr. John Trumble, from the bottom of my heart thank you. None of this would have been possible without your guidance and tutelage. I know it could not have been easy to willingly accept the challenge of taking a non-entomologist but again I thank you for this wonderful opportunity to have pursued this degree under your supervision. I would also like to thank Dr. Jay Gan and Dr. Quinn McFrederick for welcoming me into their labs and for always allowing a quick drop in. Those quick moments in your doorways were some of the most helpful during this process. A very special thank you goes to the entire Trumble Lab for their help in rearing insects, collecting, counting when I could not, reviews of manuscripts, and trouble-shooting research snafus. -
The Maryland Entomologist
THE MARYLAND ENTOMOLOGIST Insect and related-arthropod studies in the Mid-Atlantic region Volume 5, Number 4 September 2012 September 2012 The Maryland Entomologist Volume 5, Number 4 MARYLAND ENTOMOLOGICAL SOCIETY Executive Committee: President Frederick Paras Vice President Philip J. Kean Secretary Richard H. Smith, Jr. Treasurer Edgar A. Cohen, Jr. Publications Editor Eugene J. Scarpulla Historian Robert S. Bryant The Maryland Entomological Society (MES) was founded in November 1971, to promote the science of entomology in all its sub-disciplines; to provide a common meeting venue for professional and amateur entomologists residing in Maryland, the District of Columbia, and nearby areas; to issue a periodical and other publications dealing with entomology; and to facilitate the exchange of ideas and information through its meetings and publications. The MES logo features an illustration of Euphydryas phaëton (Drury), the Baltimore Checkerspot, with its generic name above and its specific epithet below (both in capital letters), all on a pale green field; all these are within a yellow ring double-bordered by red, bearing the message “* Maryland Entomological Society * 1971 *”. All of this is positioned above the Shield of the State of Maryland. In 1973, the Baltimore Checkerspot was named the official insect of the State of Maryland through the efforts of many MES members. Membership in the MES is open to all persons interested in the study of entomology. All members receive the annual journal, The Maryland Entomologist, and the digital e-newsletter, Phaëton. Institutions may subscribe to The Maryland Entomologist but may not become members. Prospective members should send to the Treasurer full dues for the current MES year (October – September), along with their full name, address, telephone number, e-mail address and entomological interests. -
Author's Personal Copy
Author's personal copy Journal of Arid Environments 74 (2010) 712–714 Contents lists available at ScienceDirect Journal of Arid Environments journal homepage: www.elsevier.com/locate/jaridenv Short Communication Temporal variation in extrafloral nectar secretion by reproductive tissues of the senita cactus, Pachycereus schottii (Cactaceae), in the Sonoran Desert of Mexico J.N. Holland*, S.A. Chamberlain, K.C. Horn Department of Ecology and Evolutionary Biology, Rice University, 6100 Main St., Houston, TX 77005, USA article info abstract Article history: Plant/ant interactions mediated by extrafloral nectar (EFN) are common in nature. EFN is produced by Received 13 June 2009 plant species of >330 genera across 25% of all angiosperm families. Despite natural history observations Received in revised form suggesting its widespread occurrence within the Cactaceae, few studies have quantified EFN production 19 August 2009 by cacti. In this study, we conducted ant-exclusion experiments to examine temporal variation in, and Accepted 8 October 2009 ant consumption of, EFN produced by buds and fruits of the senita cactus (Pachycereus schottii) in the Available online 29 October 2009 Sonoran Desert. EFN production by both buds and fruits was greatest at night and nearly absent by day. EFN remaining on buds and fruits was lower (and nearly absent) with ants than without ants. These Keywords: Ant Bud results suggest the need for further studies of senita and other cacti that examine the ability of EFN Columnar cactus production to attract and reward, but not necessarily oversupply ant consumers that provide them with Consumer Fruit herbivore resistance. Ó 2009 Elsevier Ltd. All rights reserved.