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UNIVERSIDAD POLITÉCNICA DE CARTAGENA ESCUELA TÉCNICA SUPERIOR DE INGENIERÍA AGRONÓMICA DEPARTAMENTO DE PRODUCCIÓN VEGETAL INGENIERO AGRÓNOMO PROYECTO FIN DE CARRERA: “AISLAMIENTO E IDENTIFICACIÓN DE LOS RIZOBIOS ASOCIADOS A LOS NÓDULOS DE ASTRAGALUS NITIDIFLORUS”. Realizado por: Noelia Real Giménez Dirigido por: María José Vicente Colomer Francisco José Segura Carreras Cartagena, Julio de 2014. ÍNDICE GENERAL 1. Introducción…………………………………………………….…………………………………………………1 1.1. Astragalus nitidiflorus………………………………..…………………………………………………2 1.1.1. Encuadre taxonómico……………………………….…..………………………………………………2 1.1.2. El origen de Astragalus nitidiflorus………………………………………………………………..4 1.1.3. Descripción de la especie………..…………………………………………………………………….5 1.1.4. Biología…………………………………………………………………………………………………………7 1.1.4.1. Ciclo vegetativo………………….……………………………………………………………………7 1.1.4.2. Fenología de la floración……………………………………………………………………….9 1.1.4.3. Sistema de reproducción……………………………………………………………………….10 1.1.4.4. Dispersión de los frutos…………………………………….…………………………………..11 1.1.4.5. Nodulación con Rhizobium…………………………………………………………………….12 1.1.4.6. Diversidad genética……………………………………………………………………………....13 1.1.5. Ecología………………………………………………………………………………………………..…….14 1.1.6. Corología y tamaño poblacional……………………………………………………..…………..15 1.1.7. Protección…………………………………………………………………………………………………..18 1.1.8. Amenazas……………………………………………………………………………………………………19 1.1.8.1. Factores bióticos…………………………………………………………………………………..19 1.1.8.2. Factores abióticos………………………………………………………………………………….20 1.1.8.3. Factores antrópicos………………..…………………………………………………………….21 -
Table S1. Bacterial Otus from 16S Rrna
Table S1. Bacterial OTUs from 16S rRNA sequencing analysis including only taxa which were identified to genus level (those OTUs identified as Ambiguous taxa, uncultured bacteria or without genus-level identifications were omitted). OTUs with only a single representative across all samples were also omitted. Taxa are listed from most to least abundant. Pitcher Plant Sample Class Order Family Genus CB1p1 CB1p2 CB1p3 CB1p4 CB5p234 Sp3p2 Sp3p4 Sp3p5 Sp5p23 Sp9p234 sum Gammaproteobacteria Legionellales Coxiellaceae Rickettsiella 1 2 0 1 2 3 60194 497 1038 2 61740 Alphaproteobacteria Rhodospirillales Rhodospirillaceae Azospirillum 686 527 10513 485 11 3 2 7 16494 8201 36929 Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter 455 302 873 103 16 19242 279 55 760 1077 23162 Betaproteobacteria Burkholderiales Oxalobacteraceae Duganella 9060 5734 2660 40 1357 280 117 29 129 35 19441 Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas 3336 1991 3475 1309 2819 233 1335 1666 3046 218 19428 Betaproteobacteria Burkholderiales Burkholderiaceae Paraburkholderia 0 1 0 1 16051 98 41 140 23 17 16372 Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter 77 39 3123 20 2006 324 982 5764 408 21 12764 Gammaproteobacteria Pseudomonadales Moraxellaceae Alkanindiges 9 10 14 7 9632 6 79 518 1183 65 11523 Betaproteobacteria Neisseriales Neisseriaceae Aquitalea 0 0 0 0 1 1577 5715 1471 2141 177 11082 Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium 324 219 8432 533 24 123 7 15 111 324 10112 Alphaproteobacteria -
Isolation and Identification of Microvirga Thermotolerans HR1, A
microorganisms Article Isolation and Identification of Microvirga thermotolerans HR1, a Novel Thermo-Tolerant Bacterium, and Comparative Genomics among Microvirga Species Jiang Li 1,2, Ruyu Gao 2, Yun Chen 2, Dong Xue 2, Jiahui Han 2, Jin Wang 1,2, Qilin Dai 1, Min Lin 2, Xiubin Ke 2,* and Wei Zhang 2,* 1 School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang 621010, Sichuan, China; [email protected] (J.L.); [email protected] (J.W.); [email protected] (Q.D.) 2 Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; [email protected] (R.G.); [email protected] (Y.C.); [email protected] (D.X.); [email protected] (J.H.); [email protected] (M.L.) * Correspondence: [email protected] (X.K.); [email protected] (W.Z.) Received: 27 November 2019; Accepted: 9 January 2020; Published: 10 January 2020 Abstract: Members of the Microvirga genus are metabolically versatile and widely distributed in Nature. However, knowledge of the bacteria that belong to this genus is currently limited to biochemical characteristics. Herein, a novel thermo-tolerant bacterium named Microvirga thermotolerans HR1 was isolated and identified. Based on the 16S rRNA gene sequence analysis, the strain HR1 belonged to the genus Microvirga and was highly similar to Microvirga sp. 17 mud 1-3. The strain could grow at temperatures ranging from 15 to 50 ◦C with a growth optimum at 40 ◦C. It exhibited tolerance to pH range of 6.0–8.0 and salt concentrations up to 0.5% (w/v). It contained ubiquinone 10 as the predominant quinone and added group 8 as the main fatty acids. -
The Effect of Burned Liver on the Length, Weight and Development of Megaselia Scalaris (Loew)(Diptera: Phoridae)–A Preliminary Assessment and Implications in Forensic Entomology
Jurnal Sains Kesihatan Malaysia 16(1) 2018: 29-33 DOI : http://dx.doi.org./10.17576/JSKM-2018-1601-04 Komunikasi Pendek/Short Communication The Effect of Burned Liver on the Length, Weight and Development of Megaselia scalaris (Loew) (Diptera: Phoridae) – A Preliminary Assessment and Implications in Forensic Entomology (Kesan Penggunaan Hati Lembu Dibakar terhadap Panjang, Jisim dan Perkembangan Megaselia scalaris (Loew) (Diptera: Phoridae) – Penilaian Awal dan Kesannya di Bidang Entomologi Forensik) NUR AQIDAH AHMAD, AMIRAH SUHAILAH RAMLI & RAJA MUHAMMAD ZUHA ABSTRACT Development of insects in laboratory for minimum post mortem interval estimation (mPMI) or time of colonisation (TOC) in forensic entomology can be affected by the type and quality of food consumed during larval period. Since mPMI estimation also involves analysis of larval specimens collected from burned human remains, it is important to study if burned tissues could affect growth of sarcosaprophagous larvae. This study investigated the effect of burned tissues on the size and developmental period of Megaselia scalaris (Loew) (Diptera: Phoridae), a species of forensic importance. Development of M. scalaris on 75 g burned cow’s liver was compared with control liver in three study replicates. Mean larval length (2.87 ± 0.11 mm) and weight (0.81 ± 0.08 mg) of M. scalaris larvae in burned liver diets were significantly lower than larval length (5.03 ± 0.15 mm) and weight (2.85 ± 0.21 mg) of control liver diets (p < 0.001) whilst mean pupal length (2.53 ± 0.06 mm) and weight (0.92 ± 0.06 mg) in burned liver diets were significantly lower than pupal length (3.52 ± 0.06 mm) and weight (2.84 ± 0.16 mg) in control liver diets (p < 0.001). -
Diversion and Phylogenetic Relatedness of Filterable Bacteria from Norwegian Tap and Bottled Waters
Diversion and phylogenetic relatedness of filterable bacteria from Norwegian tap and bottled waters Short title: Filterable bacteria in Norwegian tap and bottled waters Colin Charnock*, Ralf Xue Hagen, Theresa Ngoc-Thu Nguyen, Linh Thuy Vo Department of Life Sciences and Health, Oslo Metropolitan University, NO-0130, Oslo, Norway *Corresponding author. E-mail address: [email protected]. ABSTRACT Numerous articles have documented the existence of filterable bacteria. Where filtration is the chosen method of sterilization for medicinal or media components, these bacteria will by definition render products non-sterile. They may further represent a health hazard to the end user. A wide-range of bacterial genera were found in bottled and tap water filtrates from 0.2 µm filters, including genera housing opportunistic pathogens (e.g. Methylobacterium) and endospore formers (Paenibacillus). Two municipal tap water isolates were only distantly related to named species. One of these grew on agar, and could potentially provide hitherto unharvested useful biological products. The other grew only in water, and failed to produce colonies on media targeting either heterotrophs or autotrophs. The present study is one of very few looking at filterable bacteria in bottled waters intended for human consumption and the first identifying the filterable portion. It extends the range of known habitats of filterable bacteria and provides data on two new or novel species. Key words │bottled water, filterable bacteria, new species ©IWA Publishing 2019. The definitive peer-reviewed and edited version of this article is published in J Water Health (2019) 17 (2): 295-307 https://doi.org/10.2166/wh.2019.284 and is available at www.iwapublishing.com. -
Deep Divergence and Rapid Evolutionary Rates in Gut-Associated Acetobacteraceae of Ants Bryan P
Brown and Wernegreen BMC Microbiology (2016) 16:140 DOI 10.1186/s12866-016-0721-8 RESEARCH ARTICLE Open Access Deep divergence and rapid evolutionary rates in gut-associated Acetobacteraceae of ants Bryan P. Brown1,2 and Jennifer J. Wernegreen1,2* Abstract Background: Symbiotic associations between gut microbiota and their animal hosts shape the evolutionary trajectories of both partners. The genomic consequences of these relationships are significantly influenced by a variety of factors, including niche localization, interaction potential, and symbiont transmission mode. In eusocial insect hosts, socially transmitted gut microbiota may represent an intermediate point between free living or environmentally acquired bacteria and those with strict host association and maternal transmission. Results: We characterized the bacterial communities associated with an abundant ant species, Camponotus chromaiodes. While many bacteria had sporadic distributions, some taxa were abundant and persistent within and across ant colonies. Specially, two Acetobacteraceae operational taxonomic units (OTUs; referred to as AAB1 and AAB2) were abundant and widespread across host samples. Dissection experiments confirmed that AAB1 and AAB2 occur in C. chromaiodes gut tracts. We explored the distribution and evolution of these Acetobacteraceae OTUs in more depth. We found that Camponotus hosts representing different species and geographical regions possess close relatives of the Acetobacteraceae OTUs detected in C. chromaiodes. Phylogenetic analysis revealed that AAB1 and AAB2 join other ant associates in a monophyletic clade. This clade consists of Acetobacteraceae from three ant tribes, including a third, basal lineage associated with Attine ants. This ant-specific AAB clade exhibits a significant acceleration of substitution rates at the 16S rDNA gene and elevated AT content. -
Bacterial Communities Associated with the Hindgut of Tipula Abdominalis Larvae
BACTERIAL COMMUNITIES ASSOCIATED WITH THE HINDGUT OF TIPULA ABDOMINALIS LARVAE (DIPTERA: TIPULIDAE), A NATURAL BIOREFINERY by DANA M. COOK (Under the Direction of Joy Doran Peterson) ABSTRACT Insects are the largest taxonomic group of animals on earth. Although a few thorough studies have shown insect guts host high microbial diversity, many insect-microbe associations have not been investigated. Tipula abdominalis is an aquatic crane fly ubiquitous in riparian environments. T. abdominalis larvae are shredders, a functional feeding group of insects that consume coarse particulate organic matter, primarily leaf litter. In small stream ecosystems, leaf litter comprises the majority of carbon and energy inputs; however, many organisms are unable to degrade this lignocellulosic material. By converting lignocellulose into a form that other organisms can use, T. abdominalis larvae influence the bioavailability of carbon and energy within the ecosystem. Evidence suggests that the bacterial community associated with the T. abdominalis larval hindgut facilitates the digestion of its recalcitrant lignocellulosic diet. Such lignocellulose-ecosystem-insect-microbiota interactions provide a model natural biorefinery and have become of special interest recently for the application of microbial conversion of lignocellulose to biofuels, including ethanol, butanol, and hydrogen. Bacterial isolates from the T. abdominalis larval hindgut were characterized, and many had enzymatic activity against plant polymer model substrates. Several isolates had low 16S rRNA gene sequence similarity to previous described bacteria, including the proposed novel genus Klugiella xanthotipulae gen. nov., sp. nov. Clone libraries of the 16S rRNA gene revealed a phylogenetically diverse bacterial community associated with the larval hindgut wall epithelial and lumen material. Clostridia and Bacteroidetes dominated both hindgut wall and lumen, while Betaproteobacteria dominated leaf diet- and cast-associated microbiota. -
Biodiversité Du Microbiome Cutané Des Organismes Marins : Variabilité, Déterminants Et Importance Dans L’Écosystème Marlène Chiarello
Biodiversité du microbiome cutané des organismes marins : variabilité, déterminants et importance dans l’écosystème Marlène Chiarello To cite this version: Marlène Chiarello. Biodiversité du microbiome cutané des organismes marins : variabilité, détermi- nants et importance dans l’écosystème. Microbiologie et Parasitologie. Université Montpellier, 2017. Français. NNT : 2017MONTT092. tel-01693132 HAL Id: tel-01693132 https://tel.archives-ouvertes.fr/tel-01693132 Submitted on 25 Jan 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. ! ! ! Délivré par l’Université de Montpellier Préparée au sein de l’école doctorale GAIA Et de l’unité de recherche MARBEC (Centre pour la Biodiversité marine, l’Exploitation et la Conservation) Spécialité : Écologie Fonctionnelle et Sciences Agronomiques Présentée par Marlène Chiarello Biodiversité du microbiome cutané des organismes marins : variabilité, déterminants et importance dans l’écosystème Soutenue le 29 novembre 2017 devant le jury composé de M. Thierry BOUVIER, DR, CNRS Directeur M. Frédéric DELSUC, DR, CNRS Examinateur M. Pierre GALAND, DR, CNRS Invité M. Fabrice NOT, DR, CNRS Invité M. Loïc PELLISIER, Asst. Prof., ETH Zürich Rapporteur M. Télesphore SIME-NGANDO, DR, CNRS Rapporteur Mme Eve TOULZA, MCF, Université de Perpignan Examinateur M. -
Evolutionary Background Entities at the Cellular and Subcellular Levels in Bodies of Invertebrate Animals
The Journal of Theoretical Fimpology Volume 2, Issue 4: e-20081017-2-4-14 December 28, 2014 www.fimpology.com Evolutionary Background Entities at the Cellular and Subcellular Levels in Bodies of Invertebrate Animals Shu-dong Yin Cory H. E. R. & C. Inc. Burnaby, British Columbia, Canada Email: [email protected] ________________________________________________________________________ Abstract The novel recognition that individual bodies of normal animals are actually inhabited by subcellular viral entities and membrane-enclosed microentities, prokaryotic bacterial and archaeal cells and unicellular eukaryotes such as fungi and protists has been supported by increasing evidences since the emergence of culture-independent approaches. However, how to understand the relationship between animal hosts including human beings and those non-host microentities or microorganisms is challenging our traditional understanding of pathogenic relationship in human medicine and veterinary medicine. In recent novel evolution theories, the relationship between animals and their environments has been deciphered to be the interaction between animals and their environmental evolutionary entities at the same and/or different evolutionary levels;[1-3] and evolutionary entities of the lower evolutionary levels are hypothesized to be the evolutionary background entities of entities at the higher evolutionary levels.[1,2] Therefore, to understand the normal existence of microentities or microorganisms in multicellular animal bodies is becoming the first priority for elucidating the ecological and evolutiological relationships between microorganisms and nonhuman macroorganisms. The evolutionary background entities at the cellular and subcellular levels in bodies of nonhuman vertebrate animals have been summarized recently.[4] In this paper, the author tries to briefly review the evolutionary background entities (EBE) at the cellular and subcellular levels for several selected invertebrate animal species. -
Development of a Forensically Important Fly, Megaselia Scalaris
Jurnal Sains Kesihatan Malaysia 10 (2) 2012: 49-52 Komunikasi Pendek/Short Communication Development of a Forensically Important Fly, Megaselia scalaris (Loew) (Diptera: Phoridae) on Cow’s Liver and Various Agar-based Diets (Perkembangan Lalat Berkepentingan Forensik, Megaselia scalaris (Loew) (Diptera: Phoridae) Pada Hati Lembu dan Pelbagai Diet Berasaskan Agar) RAJA MUHAMMAD ZUHA, SUPRIYANI MUSTAMIN, BALKHIS BASHURI, NAZNI WASI AHMAD & BAHARUDIN OMAR ABSTRACT In forensic entomology practice, it is more common to use raw animal tissue to breed dipteran larvae and it often brings unpleasant odour in the laboratory. Few studies suggested the use of synthetic diets, mainly agar-based media, as alternatives to animal tissue but it is rarely being practiced in forensic entomology laboratory. The present study observed the growth of a forensically important fly, Megaselia scalaris (Loew) on raw cow’s liver, nutrient agar, casein agar and cow’s liver agar. A total of 100 M. scalaris eggs were transferred each into the different media and placed in an incubator at 30°C in a continuous dark condition. Data on length and developmental period were collected by randomly sampling three of the largest larvae from each rearing media, twice a day at 0900 and 1500 hours until pupariation. M. scalaris larvae reared on raw cow’s liver recorded the highest mean length (4.23 ± 1.96 mm) followed by cow’s liver agar (3.79 ± 1.62 mm), casein agar (3.14 ± 1.16 mm) and nutrient agar (3.09 ± 1.11 mm). Larval length in raw liver and liver agar were significantly different from those in nutrient and casein agar (p < 0.05). -
Characterization of Bacterial Communities Associated
www.nature.com/scientificreports OPEN Characterization of bacterial communities associated with blood‑fed and starved tropical bed bugs, Cimex hemipterus (F.) (Hemiptera): a high throughput metabarcoding analysis Li Lim & Abdul Hafz Ab Majid* With the development of new metagenomic techniques, the microbial community structure of common bed bugs, Cimex lectularius, is well‑studied, while information regarding the constituents of the bacterial communities associated with tropical bed bugs, Cimex hemipterus, is lacking. In this study, the bacteria communities in the blood‑fed and starved tropical bed bugs were analysed and characterized by amplifying the v3‑v4 hypervariable region of the 16S rRNA gene region, followed by MiSeq Illumina sequencing. Across all samples, Proteobacteria made up more than 99% of the microbial community. An alpha‑proteobacterium Wolbachia and gamma‑proteobacterium, including Dickeya chrysanthemi and Pseudomonas, were the dominant OTUs at the genus level. Although the dominant OTUs of bacterial communities of blood‑fed and starved bed bugs were the same, bacterial genera present in lower numbers were varied. The bacteria load in starved bed bugs was also higher than blood‑fed bed bugs. Cimex hemipterus Fabricus (Hemiptera), also known as tropical bed bugs, is an obligate blood-feeding insect throughout their entire developmental cycle, has made a recent resurgence probably due to increased worldwide travel, climate change, and resistance to insecticides1–3. Distribution of tropical bed bugs is inclined to tropical regions, and infestation usually occurs in human dwellings such as dormitories and hotels 1,2. Bed bugs are a nuisance pest to humans as people that are bitten by this insect may experience allergic reactions, iron defciency, and secondary bacterial infection from bite sores4,5. -
Endophytic Bacteria Associated to Sharpshooters (Hemiptera: Cicadellidae), Insect Vectors of Xylella Fastidiosa Subsp
atholog P y & nt a M l i P c r Journal of f o o Gai et al. J Plant Pathol Microbiol 2011, 2:3 b l i a o l n DOI: 10.4172/2157-7471.1000109 o r g u y o J Plant Pathology & Microbiology ISSN: 2157-7471 Research Article Open Access Endophytic Bacteria Associated to Sharpshooters (Hemiptera: Cicadellidae), Insect Vectors of Xylella fastidiosa subsp. pauca Cláudia Santos Gai1, Francisco Dini-Andreote1, Fernando Dini Andreote1, João Roberto Spotti Lopes2, Welington Luiz Araújo3, Thomas Albert Miller4, João Lúcio Azevedo1 and Paulo Teixeira Lacava5* 1Department of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, University of São Paulo, Piracicaba, SP, Brazil 2Department of Entomology, Plant Pathology and Zoology, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, SP, Brazil 3Núcleo Integrado de Biotecnologia, University of Mogi das Cruzes, Mogi das Cruzes, SP, Brazil 4Department of Entomology, University of California Riverside, Riverside, CA, USA 5Institute of Natural Sciences, Federal University of Alfenas, Alfenas, MG, Brazil Abstract Xylella fastidiosa subsp. pauca causes citrus variegated chlorosis (CVC) disease in Brazil, resulting in significant production losses in the citrus industry.X. fastidiosa subsp. pauca is mainly transmitted by three species of sharpshooters (Hemiptera: Cicadellidae) in Brazil; Dilobopterus costalimai (Young), Acrogonia citrina Marucci & Cavichioli and Oncometopia facialis (Signoret). We identified bacterial communities associated with the heads of surface-sterilized insect vectors of X. fastidiosa subsp. pauca that were collected from CVC affected citrus groves in Brazil. Bacteria were isolated and analyzed by amplified ribosomal DNA restriction analysis (ARDRA) and sequencing, revealing the presence, among the most abundant genera, of the well-known citrus endophytes Methylobacterium spp.