bioRxiv preprint doi: https://doi.org/10.1101/2020.05.26.112318; this version posted May 27, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 The Perfect Storm: 2 Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene 3 Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales 4 5 Liming Cai1, Zhenxiang Xi1,2, Emily Moriarty Lemmon3, Alan R. Lemmon4, Austin Mast3, 6 Christopher E. Buddenhagen3,5, Liang Liu6, Charles C. Davis1 7 8 1 Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 9 Cambridge, MA 02138, USA; 10 2 Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of 11 Life Sciences, Sichuan University, Chengdu 610065, China; 12 3 Department of Biological Sciences, 319 Stadium Dr., Florida State University, Tallahassee, 13 FL 32306, USA; 14 4 Department of Scientific Computing, Florida State University, Tallahassee, FL 32306, USA; 15 5 AgResearch, 10 Bisley Road, Hamilton 3214, New Zealand 16 6 Department of Statistics and Institute of Bioinformatics, University of Georgia, Athens, GA 17 30602, USA; 18 19 Corresponding author: 20 Liming Cai, Department of Organismic and Evolutionary Biology, Harvard University 21 Herbaria, Cambridge, MA 02138, USA; E-mail:
[email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.05.26.112318; this version posted May 27, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.