Orbilia Blumenaviensis and Its Arthrobotrys Anamorph Min Qiao
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Evolution of Nematode-Trapping Cells of Predatory Fungi of the Orbiliaceae Based on Evidence from Rrna-Encoding DNA and Multiprotein Sequences
Evolution of nematode-trapping cells of predatory fungi of the Orbiliaceae based on evidence from rRNA-encoding DNA and multiprotein sequences Ying Yang†‡, Ence Yang†‡, Zhiqiang An§, and Xingzhong Liu†¶ †Key Laboratory of Systematic Mycology and Lichenology, Institute of Microbiology, Chinese Academy of Sciences 3A Datun Rd, Chaoyang District, Beijing 100101, China; ‡Graduate University of Chinese Academy of Sciences, Beijing 100049, China; and §Merck Research Laboratories, WP26A-4000, 770 Sumneytown Pike, West Point, PA 19486-0004 Communicated by Joan Wennstrom Bennett, Rutgers, The State University of New Jersey, New Brunswick, NJ, March 27, 2007 (received for review October 28, 2006) Among fungi, the basic life strategies are saprophytism, parasitism, These trapping devices all capture nematodes by means of an and predation. Fungi in Orbiliaceae (Ascomycota) prey on animals adhesive layer covering part or all of the device surfaces. The by means of specialized trapping structures. Five types of trapping constricting ring (CR), the fifth and most sophisticated trapping devices are recognized, but their evolutionary origins and diver- device (Fig. 1D) captures prey in a different way. When a gence are not well understood. Based on comprehensive phylo- nematode enters a CR, the three ring cells are triggered to swell genetic analysis of nucleotide sequences of three protein-coding rapidly inwards and firmly lasso the victim within 1–2 sec. genes (RNA polymerase II subunit gene, rpb2; elongation factor 1-␣ Phylogenetic analysis of ribosomal RNA gene sequences indi- ␣ gene, ef1- ; and ß tubulin gene, bt) and ribosomal DNA in the cates that fungi possessing the same trapping device are in the internal transcribed spacer region, we have demonstrated that the same clade (3, 8–11). -
Orbilia Fimicola, a Nematophagous Discomycete and Its Arthrobotrys Anamorph
Mycologia, 86(3), 1994, pp. 451-453. ? 1994, by The New York Botanical Garden, Bronx, NY 10458-5126 Orbilia fimicola, a nematophagous discomycete and its Arthrobotrys anamorph Donald H. Pfister range of fungi observed. In field studies, Angel and Farlow Reference Library and Herbarium, Harvard Wicklow (1983), for example, showed the presence of University, Cambridge, Massachusetts 02138 coprophilous fungi for as long as 54 months. Deer dung was placed in a moist chamber 1 day after it was collected. The moist chamber was main? Abstract: Cultures derived from a collection of Orbilia tained at room temperature and in natural light. It fimicola produced an Arthrobotrys anamorph. This ana? underwent periodic drying. Cultures were derived from morph was identified as A. superba. A discomycete ascospores gathered by fastening ascomata to the in? agreeing closely with 0. fimicola was previously re?side of a petri plate lid which contained corn meal ported to be associated with a culture of A. superba agar (BBL). Germination of deposited ascospores was but no definitive connection was made. In the present observed through the bottom of the petri plate. Cul? study, traps were formed in the Arthrobotrys cultures tures were kept at room temperature in natural light. when nematodes were added. The hypothesis is put Ascomata from the moist chamber collection are de? forth that other Orbilia species might be predators posited of in FH. nematodes or invertebrates based on their ascospore The specimen of Orbilia fimicola was studied and and conidial form. compared with the original description. The mor? Key Words: Arthrobotrys, nematophagy, Orbilia phology of the Massachusetts collection agrees with the original description; diagnostic features are shown in Figs. -
Castor, Pollux and Life Histories of Fungi'
Mycologia, 89(1), 1997, pp. 1-23. ? 1997 by The New York Botanical Garden, Bronx, NY 10458-5126 Issued 3 February 1997 Castor, Pollux and life histories of fungi' Donald H. Pfister2 1982). Nonetheless we have been indulging in this Farlow Herbarium and Library and Department of ritual since the beginning when William H. Weston Organismic and Evolutionary Biology, Harvard (1933) gave the first presidential address. His topic? University, Cambridge, Massachusetts 02138 Roland Thaxter of course. I want to take the oppor- tunity to talk about the life histories of fungi and especially those we have worked out in the family Or- Abstract: The literature on teleomorph-anamorph biliaceae. As a way to focus on the concepts of life connections in the Orbiliaceae and the position of histories, I invoke a parable of sorts. the family in the Leotiales is reviewed. 18S data show The ancient story of Castor and Pollux, the Dios- that the Orbiliaceae occupies an isolated position in curi, goes something like this: They were twin sons relationship to the other members of the Leotiales of Zeus, arising from the same egg. They carried out which have so far been studied. The following form many heroic exploits. They were inseparable in life genera have been studied in cultures derived from but each developed special individual skills. Castor ascospores of Orbiliaceae: Anguillospora, Arthrobotrys, was renowned for taming and managing horses; Pol- Dactylella, Dicranidion, Helicoon, Monacrosporium, lux was a boxer. Castor was killed and went to the Trinacrium and conidial types that are referred to as being Idriella-like. -
Dactylella Pseudobrevistipitata, a New Species from China
Ann Microbiol (2011) 61:591–595 DOI 10.1007/s13213-010-0177-2 ORIGINAL ARTICLE Dactylella pseudobrevistipitata, a new species from China Li Qin & Min Qiao & Yue Yang & Guang-Zhu Yang & Kai-Ping Lu & Ke-Qin Zhang & Jian-Ping Xu & Ze-Fen Yu Received: 9 June 2010 /Accepted: 26 November 2010 /Published online: 16 December 2010 # Springer-Verlag and the University of Milan 2010 Abstract An anamorphic fungus was isolated from fresh cylindrical, one-celled at first, later 2– to many septate, specimens of Orbilia species collected in Yunnan Province, hyaline (Grove 1884). In the type strain, the predacious China. The fungus was characterized by very short character was not mentioned. Later, Drechsler (1937, 1950) conidiophores and 1–5 septate cylindrical conidia, and most described many new taxa of nematode-trapping species with closely related phylogenetically to Dactylella vermiformis similar conidia following this concept. Then, circumscription that produces branched conidiophores and 0–1 septate of the genus was emended several times by other authors conidia, but the calculated similarity of ITS sequences was (Subramanian 1963, 1977; Schenck et al. 1977; Rubner only 83% between the two fungus species. Considering the 1996), in which Ruber’s genus concept is widely accepted morphological characteristics and the calculated similarity (Scholler et al. 1999;Lietal.2005;Yuetal.2007a, b;Chen value, a new species, Dactylella pseudobrevistipitata,was et al. 2007a, b, c). Chen et al. (2007a, b, c) further emended described with holotype YMF 1.03504. this genus and transferred those species with short conidiophores to Vermispora Deighton & Pirozynski and Keywords Dactylella pseudobrevistipitata . Phylogenetic Brachyphoris J Chen, LL Xu, B Liu & XZ Liu. -
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes 1 DONALD H. PFISTER CONTENTS 5. Discinaceae . 47 6. Glaziellaceae. 47 I. Introduction ................................ 35 7. Helvellaceae . 47 II. Orbiliomycetes: An Overview.............. 37 8. Karstenellaceae. 47 III. Occurrence and Distribution .............. 37 9. Morchellaceae . 47 A. Species Trapping Nematodes 10. Pezizaceae . 48 and Other Invertebrates................. 38 11. Pyronemataceae. 48 B. Saprobic Species . ................. 38 12. Rhizinaceae . 49 IV. Morphological Features .................... 38 13. Sarcoscyphaceae . 49 A. Ascomata . ........................... 38 14. Sarcosomataceae. 49 B. Asci. ..................................... 39 15. Tuberaceae . 49 C. Ascospores . ........................... 39 XIII. Growth in Culture .......................... 50 D. Paraphyses. ........................... 39 XIV. Conclusion .................................. 50 E. Septal Structures . ................. 40 References. ............................. 50 F. Nuclear Division . ................. 40 G. Anamorphic States . ................. 40 V. Reproduction ............................... 41 VI. History of Classification and Current I. Introduction Hypotheses.................................. 41 VII. Growth in Culture .......................... 41 VIII. Pezizomycetes: An Overview............... 41 Members of two classes, Orbiliomycetes and IX. Occurrence and Distribution .............. 41 Pezizomycetes, of Pezizomycotina are consis- A. Parasitic Species . ................. 42 tently shown -
65 Spring 2015 Interim Editor
Newsletter of the FRIENDS OF THE FARLOW Deborah Smiley Number 65 Spring 2015 Interim Editor Trees and Treetops: A Study of Phylogeny and Natural History of the Orbiliomycetes in New England Valentìna Rodríguez, Harvard College, class of 2015 As a bright-eyed and bushy-tailed new student microscopic, sexually generated spores. These to the world of mycology I was shown a short fungi are reported in mesic habitats – moist, video clip last spring by Dr. mostly forest floor envi- Donald Pfister and post- ronments – and from dry doctoral researcher Dr. habitats of dead branches Rosanne Healy in which in living trees. Although the a fungus (Arthrobotrys sp.) group had been studied for formed ring-like traps and more than a hundred years then ensnared and digested by mycologists from around small roundworms (nema- the world it was not un- todes). I was interested in til Dr. Pfister’s 1997 paper understanding more. But to that the asexual and sexual do so and to explore these states of Orbilia were con- carnivorous fungi it became nected and verified through clear that I would also have field collections and cul- to understand the rather tural studies. This connec- tangled history of the class tion was a leap forward in Orbiliomycetes, which in- the understanding of the cludes Arthrobotrys and its A nematode entangled in hyphal loopes. life cycle of the Orbiliomy- close relatives. cetes and an upheaval in Orbiliomycetes (phylum Ascomycota, sub- the taxonomic relationships and the names used phylum Pezizomycotina) are cup fungi, produc- to identify these organisms. The nomenclature ing small reproductive structures that house the has yet to be resolved, but a German indepen- Friends of the Farlow Annual Meeting Saturday, November 7th See page 7 for details. -
Pezizalean Mycorrhizas and Sporocarps in Ponderosa Pine (Pinus Ponderosa) After Prescribed Fires in Eastern Oregon, USA
Mycorrhiza (2005) 15:79-86 DOI 10.1007/s00572-004-0303-8 K. E. Fujimura • J. E. Smith • T. R. Horton • N. S. Weber- J. W. Spatafora Pezizalean mycorrhizas and sporocarps in ponderosa pine (Pinus ponderosa) after prescribed fires in eastern Oregon, USA Received: 28 May 2003 / Accepted: 26 February 2004 / Published online: 13 August 2004 © Springer-Verlag 2004 Abstract Post-fire Pezizales fruit commonly in many types clustered with two genera of the Pezizales, forest types after fire. The objectives of this study were to Wilcoxina and Geopora. Subsequent analyses indicated determine which Pezizales appeared as sporocarps after a that two of these mycobionts were probably Wilcoxina prescribed fire in the Blue Mountains of eastern Oregon, rehmii, one Geopora cooperi, and one Geopora sp. The and whether species of Pezizales formed mycorrhizas on identifies of two types were not successfully determined ponderosa pine, whether or not they were detected fxom with PCR-based methods. Results contribute knowledge sporocarps. Forty-two sporocarp collections in five genera about the above- and below-ground ascomycete commu- (Anthracobia, Morchella, Peziza, Scutellinia, Tricharina) nity in a ponderosa pine forest after a low intensity fire. of post-fire Pezizales produced ten restriction fragment length polymorphism (RFLP) types. We found no root tips Keywords Ectendomycorrhizas • Pezizales • nrDNA • colonized by species of post-fire Pezizales fruiting at our Prescribed burn • Ponderosa pine site. However, 15% (6/39) of the RFLP types obtained from mycorrhizal roots within 32 soil cores were ascomycetes. Phylogenetic analyses of the 18S nuclear Introduction ribosomal DNA gene indicated that four of the six RFLP After a wildfire or prescribed burn, a series of fungi appear K. -
Two Arthrobotrys Anamorphs from Orbilia Auricolor Author(S): Donald H
Mycological Society of America Two Arthrobotrys Anamorphs from Orbilia auricolor Author(s): Donald H. Pfister and Michael E. Liftik Source: Mycologia, Vol. 87, No. 5 (Sep. - Oct., 1995), pp. 684-688 Published by: Mycological Society of America Stable URL: http://www.jstor.org/stable/3760812 Accessed: 03-10-2016 14:51 UTC JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at http://about.jstor.org/terms Mycological Society of America is collaborating with JSTOR to digitize, preserve and extend access to Mycologia This content downloaded from 140.247.98.12 on Mon, 03 Oct 2016 14:51:46 UTC All use subject to http://about.jstor.org/terms Mycologia, 87(5), 1995, pp. 684-688. ? 1995, by The New York Botanical Garden, Bronx, NY 10458-5126 Two Arthrobotrys anamorphs from Orbilia auricolor Donald H. Pfister porium Oudem. (Rubner and Baral, pers. comm.), An- Michael E. Liftik guillospora Ingold (Webster and Descals, 1979) and an Farlow Herbarium, Harvard University, 20 Divinity unnamed genus (Haines and Egger, 1982). In this pa? Avenue, Cambridge, Massachusetts 02138 per we report that two Arthrobotrys species were iso? lated from ascospores of two specimens of members of the genus Orbilia. Both specimens used in this study Abstract: Cultures derived from ascospores of two are referable to 0. -
Orbiliaceae from Thailand
Mycosphere 9(1): 155–168 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/1/5 Copyright © Guizhou Academy of Agricultural Sciences Orbiliaceae from Thailand Ekanayaka AH1,2, Hyde KD1,2, Jones EBG3, Zhao Q1 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, 50200, Thailand Ekanayaka AH, Hyde KD, Jones EBG, Zhao Q 2018 – Orbiliaceae from Thailand. Mycosphere 9(1), 155–168, Doi 10.5943/mycosphere/9/1/5 Abstract The family Orbiliaceae is characterized by small, yellowish, sessile to sub-stipitate apothecia, inoperculate asci and asymmetrical globose to fusoid ascospores. Morphological and phylogenetic studies were carried out on new collections of Orbiliaceae from Thailand and revealed Hyalorbilia erythrostigma, Hyalorbilia inflatula, Orbilia stipitata sp. nov., Orbilia leucostigma and Orbilia caudata. Our new species is confirmed to be divergent from other Orbiliaceae species based on morphological examination and molecular phylogenetic analyses of ITS and LSU sequence data. Descriptions and figures are provided for the taxa which are also compared with allied taxa. Key words – apothecia – discomycetes – inoperculate – phylogeny – taxonomy Introduction The family Orbiliaceae was established by Nannfeldt (1932). Previously, this family has been treated as a member of Leotiomycetes (Korf 1973, Spooner 1987) and Eriksson et al. (2003) transferred this family into a new class Orbiliomycetes. The recent studies on this class include Yu et al. (2011), Guo et al. -
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3 State of the World’s Fungi State of the World’s Fungi 2018 3. New discoveries: Species of fungi described in 2017 Tuula Niskanena, Brian Douglasa, Paul Kirka,b, Pedro Crousc, Robert Lückingd, P. Brandon Mathenye, Lei Caib, Kevin Hydef, Martin Cheeka a Royal Botanic Gardens, Kew, UK; b Institute of Microbiology, Chinese Academy of Sciences, China; c Westerdijk Fungal Biodiversity Institute, The Netherlands; d Botanic Garden and Botanical Museum, Freie Universität Berlin, Germany; e Department of Ecology and Evolutionary Biology, University of Tennessee, USA; f Center of Excellence in Fungal Research, Mae Fah Luang University, Thailand 18 Describing the world’s fungi New discoveries: Species of fungi described in 2017 How many new species of fungi were described in 2017? Which groups do they represent, where were they found and what are some of the more surprising discoveries? stateoftheworldsfungi.org/2018/new-discoveries.html New discoveries: Species of fungi described in 2017 19 2,189 new species of fungi were described during 2017 20 Describing the world’s fungi Cora galapagoensis, Galápagos Gymnosporangium przewalskii, China A new, colourful lichen << described from a coastal tropical forest in Brazil A new, drought-tolerant >> decomposer found on native Herpothallon tricolor, Brazil Euphorbia in the Canary Islands Orbilia beltraniae, Canary Islands Pseudofibroporia citrinella,China 10 μm Trichomerium eucalypti, Inocybe araneosa, Australia Australia An elegant spore of a new Planamyces parisiensis, sooty mould, feeding off France ‘honeydew’ from >> sap-sucking insects A new mould, belonging >> to a new genus, discovered in rotten wood from an apartment in Paris, France Zasmidium podocarpi, Australia 10 μm New discoveries: Species of fungi described in 2017 21 Greece[4]; this genus forms mycorrhizal associations with a WITH AT LEAST 2 MILLION SPECIES OF large diversity of tree species and its truffle-like, subterranean FUNGI YET TO BE DESCRIBED[1], AND spore-bearing structures are eaten and dispersed by rodents and other animals. -
Orbiliaceae) from Yunnan, China
Fungal Diversity Pseudorbilia gen. nov. (Orbiliaceae) from Yunnan, China Ying Zhang1#, Ze-Fen Yu1#, H.-O. Baral2, Min Qiao1, Ke-Qin Zhang1* 1Laboratory for Conservation and Utilization of Bio-resources, Yunnan University, Kunming, Yunnan 650091, PR China 2Blaihofstrasse 42, D-72074 Tübingen (Germany) #These authors contributed equally to this work. Zhang, Y., Yu, Z.F., Baral, H.O., Qiao, M. and Zhang, K.Q. (2007). Pseudorbilia gen. nov. (Orbiliaceae) from Yunnan, China. Fungal Diversity 26: 305-312. A new orbiliaceous fungus, Pseudorbilia bipolaris gen. et sp. nov., is described. This fungus was collected from decayed coniferous wood on the floor of a semi-tropical forest in YiLiang County, Yunnan Province, China. It is characterized by a special type of bacilliform ascospores: both ends of the spore contain a large lens-shaped refractive spore body visible only in living spores. This spore body and the other morphological characteristics indicate that this species belongs to the family Orbiliaceae where it appears to take a position intermediate between the two accepted genera, Orbilia and Hyalorbilia. Keywords: Orbiliaceae, new genus, Pseudorbilia bipolaris Introduction Members of the family Orbiliaceae are among the globally distributed discomycete fungi. They are characterized by small, waxy, often translucent apothecia with an ectal excipulum composed of round to angular or prismatic, usually hyaline cells which are horizontally or vertically oriented; small asci intermixed with paraphyses that are typically swollen or encrusted at the apex; and by spore bodies inside living ascospores (Baral, 1994). The anamorphs in the family Orbiliaceae are distributed in about ten hyphomycetous genera (Mo et al., 2005; Liu et al., 2005a, b) and include both predacious and non- predacious species.Several species of orbiliaceous fungi has been described by many authors (Velenovský, 1934; Svrček, 1954; Jeng and Krug, 1977; Spooner, 1987; Korf, 1992). -
High-Level Classification of the Fungi and a Tool for Evolutionary Ecological Analyses
Fungal Diversity (2018) 90:135–159 https://doi.org/10.1007/s13225-018-0401-0 (0123456789().,-volV)(0123456789().,-volV) High-level classification of the Fungi and a tool for evolutionary ecological analyses 1,2,3 4 1,2 3,5 Leho Tedersoo • Santiago Sa´nchez-Ramı´rez • Urmas Ko˜ ljalg • Mohammad Bahram • 6 6,7 8 5 1 Markus Do¨ ring • Dmitry Schigel • Tom May • Martin Ryberg • Kessy Abarenkov Received: 22 February 2018 / Accepted: 1 May 2018 / Published online: 16 May 2018 Ó The Author(s) 2018 Abstract High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due to problems with alignments and the lack of a phylogenetic backbone. We propose an updated phylum- and class-level fungal classification accounting for monophyly and divergence time so that the main taxonomic ranks are more informative. Based on phylogenies and divergence time estimates, we adopt phylum rank to Aphelidiomycota, Basidiobolomycota, Calcarisporiellomycota, Glomeromycota, Entomoph- thoromycota, Entorrhizomycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota and Olpidiomycota. We accept nine subkingdoms to accommodate these 18 phyla. We consider the kingdom Nucleariae (phyla Nuclearida and Fonticulida) as a sister group to the Fungi. We also introduce a perl script and a newick-formatted classification backbone for assigning Species Hypotheses into a hierarchical taxonomic framework, using this or any other classification system. We provide an example