A Reevaluation of Predatory Orbiliaceous Fungi. II. a New Generic Concept
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Leptographium Wageneri
Leptographium wageneri back stain root disease Dutch elm disease and Scolytus multistriatus DED caused the death of millions of elms in Europe and North America from around 1920 through the present Dutch Elm Disease epidemics in North America Originally thought one species of Ophiostoma, O. ulmi with 3 different races Now two species are recognized, O. ulmi and O. novo-ulmi, and two subspecies of O. novo-ulmi Two nearly simultaneous introductions in North America and Europe 1920s O. ulmi introduced from Europe, spread throughout NA, but caused little damage to native elm trees either in NA or Europe 1950s, simultaneous introductions of O. novo-ulmi, Great Lakes area of US and Moldova-Ukraine area of Europe. North American and Europe subspecies are considered distinct. 1960 NA race introduced to Europe via Canada. By 1970s much damage to US/Canada elms killed throughout eastern and central USA O. novo-ulmi has gradually replaced O. ulmi in both North America and Europe more fit species replacing a less fit species O. novo-ulmi able to capture greater proportion of resource O. novo-ulmi probably more adapted to cooler climate than O. ulmi During replacement, O. ulmi and O. novo-ulmi occur in close proximity and can hybridize. Hybrids are not competitive, but may allow gene flow from O. ulmi to O. novo-ulmi by introgression: Backcrossing of hybrids of two plant populations to introduce new genes into a wild population Vegetative compatibility genes heterogenic incompatibility multiple loci prevents spread of cytoplasmic viruses O. novo-ulmi arrived as a single vc type, but rapidly acquired both new vc loci AND virus, probably from hybridizing with O. -
Distribution of Methionine Sulfoxide Reductases in Fungi and Conservation of the Free- 2 Methionine-R-Sulfoxide Reductase in Multicellular Eukaryotes
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433065; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Distribution of methionine sulfoxide reductases in fungi and conservation of the free- 2 methionine-R-sulfoxide reductase in multicellular eukaryotes 3 4 Hayat Hage1, Marie-Noëlle Rosso1, Lionel Tarrago1,* 5 6 From: 1Biodiversité et Biotechnologie Fongiques, UMR1163, INRAE, Aix Marseille Université, 7 Marseille, France. 8 *Correspondence: Lionel Tarrago ([email protected]) 9 10 Running title: Methionine sulfoxide reductases in fungi 11 12 Keywords: fungi, genome, horizontal gene transfer, methionine sulfoxide, methionine sulfoxide 13 reductase, protein oxidation, thiol oxidoreductase. 14 15 Highlights: 16 • Free and protein-bound methionine can be oxidized into methionine sulfoxide (MetO). 17 • Methionine sulfoxide reductases (Msr) reduce MetO in most organisms. 18 • Sequence characterization and phylogenomics revealed strong conservation of Msr in fungi. 19 • fRMsr is widely conserved in unicellular and multicellular fungi. 20 • Some msr genes were acquired from bacteria via horizontal gene transfers. 21 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433065; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
Evolution of Nematode-Trapping Cells of Predatory Fungi of the Orbiliaceae Based on Evidence from Rrna-Encoding DNA and Multiprotein Sequences
Evolution of nematode-trapping cells of predatory fungi of the Orbiliaceae based on evidence from rRNA-encoding DNA and multiprotein sequences Ying Yang†‡, Ence Yang†‡, Zhiqiang An§, and Xingzhong Liu†¶ †Key Laboratory of Systematic Mycology and Lichenology, Institute of Microbiology, Chinese Academy of Sciences 3A Datun Rd, Chaoyang District, Beijing 100101, China; ‡Graduate University of Chinese Academy of Sciences, Beijing 100049, China; and §Merck Research Laboratories, WP26A-4000, 770 Sumneytown Pike, West Point, PA 19486-0004 Communicated by Joan Wennstrom Bennett, Rutgers, The State University of New Jersey, New Brunswick, NJ, March 27, 2007 (received for review October 28, 2006) Among fungi, the basic life strategies are saprophytism, parasitism, These trapping devices all capture nematodes by means of an and predation. Fungi in Orbiliaceae (Ascomycota) prey on animals adhesive layer covering part or all of the device surfaces. The by means of specialized trapping structures. Five types of trapping constricting ring (CR), the fifth and most sophisticated trapping devices are recognized, but their evolutionary origins and diver- device (Fig. 1D) captures prey in a different way. When a gence are not well understood. Based on comprehensive phylo- nematode enters a CR, the three ring cells are triggered to swell genetic analysis of nucleotide sequences of three protein-coding rapidly inwards and firmly lasso the victim within 1–2 sec. genes (RNA polymerase II subunit gene, rpb2; elongation factor 1-␣ Phylogenetic analysis of ribosomal RNA gene sequences indi- ␣ gene, ef1- ; and ß tubulin gene, bt) and ribosomal DNA in the cates that fungi possessing the same trapping device are in the internal transcribed spacer region, we have demonstrated that the same clade (3, 8–11). -
New Records and New Distribution of Known Species in the Family Orbiliaceae from China
Vol. 8(34), pp. 3178-3190, 20 August, 2014 DOI: 10.5897/AJMR2013.6589 Article Number: 4A9B95F47094 ISSN 1996-0808 African Journal of Microbiology Research Copyright © 2014 Author(s) retain the copyright of this article http://www.academicjournals.org/AJMR Full Length Research Paper New records and new distribution of known species in the family Orbiliaceae from China Jianwei Guo1,4,*#, Shifu Li3,4#, Lifen Yang1,2, Jian Yang1, Taizhen Ye1 and Li Yang1 1Key Laboratory of Higher Quality and Efficient Cultivation and Security Control of Crops for Yunnan Province, Honghe University, Mengzi 661100, P. R. China. 2College of Business, Honghe University, Mengzi 661100, P. R. China. 3Yuxi Center for Disease Control and Prevention, Yuxi 653100, P. R. China. 4Laboratory for Conservation and Utilization of Bio-Resources, and Key Laboratory for Microbial Resources of the Ministry of Education, Yunnan University, Kunming 650091, P. R. China. Received 25 December, 2013; Accepted 17 March, 2014 The family Orbiliaceae belongs to Orbiliales, Orbiliomycetes, Pezizomycotina and Ascomycota. It presently includes Orbilia, Hyalorbilia, and Pseudorbilia, which have caused more attention in due that some members of their 10 anamorphic genera are the nematode-trapping fungi. During the survey of the distribution of Orbiliaceae since the summer of 2005, three new records including Orbilia xanthostigma, Orbilia tenebricosa, Hyalorbilia fusispora and new distribution of five known Hyalorbilia species are firstly reported from Mainland China and provided clearer illustrations. Key words: Orbiliaceae, Orbilia xanthostigma, Orbilia tenebricosa, taxonomy. INTRODUCTION Orbilia Fr., Hyalorbilia Baral et al. and Pseudorbilia Zhang Orbilia (Zhang et al., 2007). The shape and size of spore et al. -
Orbilia Fimicola, a Nematophagous Discomycete and Its Arthrobotrys Anamorph
Mycologia, 86(3), 1994, pp. 451-453. ? 1994, by The New York Botanical Garden, Bronx, NY 10458-5126 Orbilia fimicola, a nematophagous discomycete and its Arthrobotrys anamorph Donald H. Pfister range of fungi observed. In field studies, Angel and Farlow Reference Library and Herbarium, Harvard Wicklow (1983), for example, showed the presence of University, Cambridge, Massachusetts 02138 coprophilous fungi for as long as 54 months. Deer dung was placed in a moist chamber 1 day after it was collected. The moist chamber was main? Abstract: Cultures derived from a collection of Orbilia tained at room temperature and in natural light. It fimicola produced an Arthrobotrys anamorph. This ana? underwent periodic drying. Cultures were derived from morph was identified as A. superba. A discomycete ascospores gathered by fastening ascomata to the in? agreeing closely with 0. fimicola was previously re?side of a petri plate lid which contained corn meal ported to be associated with a culture of A. superba agar (BBL). Germination of deposited ascospores was but no definitive connection was made. In the present observed through the bottom of the petri plate. Cul? study, traps were formed in the Arthrobotrys cultures tures were kept at room temperature in natural light. when nematodes were added. The hypothesis is put Ascomata from the moist chamber collection are de? forth that other Orbilia species might be predators posited of in FH. nematodes or invertebrates based on their ascospore The specimen of Orbilia fimicola was studied and and conidial form. compared with the original description. The mor? Key Words: Arthrobotrys, nematophagy, Orbilia phology of the Massachusetts collection agrees with the original description; diagnostic features are shown in Figs. -
The Fungi Constitute a Major Eukary- Members of the Monophyletic Kingdom Fungi ( Fig
American Journal of Botany 98(3): 426–438. 2011. T HE FUNGI: 1, 2, 3 … 5.1 MILLION SPECIES? 1 Meredith Blackwell 2 Department of Biological Sciences; Louisiana State University; Baton Rouge, Louisiana 70803 USA • Premise of the study: Fungi are major decomposers in certain ecosystems and essential associates of many organisms. They provide enzymes and drugs and serve as experimental organisms. In 1991, a landmark paper estimated that there are 1.5 million fungi on the Earth. Because only 70 000 fungi had been described at that time, the estimate has been the impetus to search for previously unknown fungi. Fungal habitats include soil, water, and organisms that may harbor large numbers of understudied fungi, estimated to outnumber plants by at least 6 to 1. More recent estimates based on high-throughput sequencing methods suggest that as many as 5.1 million fungal species exist. • Methods: Technological advances make it possible to apply molecular methods to develop a stable classifi cation and to dis- cover and identify fungal taxa. • Key results: Molecular methods have dramatically increased our knowledge of Fungi in less than 20 years, revealing a mono- phyletic kingdom and increased diversity among early-diverging lineages. Mycologists are making signifi cant advances in species discovery, but many fungi remain to be discovered. • Conclusions: Fungi are essential to the survival of many groups of organisms with which they form associations. They also attract attention as predators of invertebrate animals, pathogens of potatoes and rice and humans and bats, killers of frogs and crayfi sh, producers of secondary metabolites to lower cholesterol, and subjects of prize-winning research. -
Molecular Characteristics and Adhesion Activity of a Novel Protein ADP1 of Arthrobotrys Oligospora to Nematodes
INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY ISSN Print: 1560–8530; ISSN Online: 1814–9596 20–1468/2021/25–6–1249–1254 DOI: 10.17957/IJAB/15.1786 http://www.fspublishers.org Full Length Article Molecular Characteristics and Adhesion Activity of a Novel Protein ADP1 of Arthrobotrys oligospora to Nematodes Li Jie1†, Chen Shuangqing1†, Li Zhiyuan1†, Wang Lixia1, Shang Yunxia1, Gong Shasha1, Xiao Chencheng1, Zhang Kai1, Zhang Xingxing2, Cai Xuepeng3, Qiao Jun1 and Meng Qingling1* 1College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, 832003, P. R. China 2Institute of Animal Science and Veterinary Research, Xinjiang Academy of Agricultural and Reclamation Science, Shihezi, Xinjiang, 832003, P. R. China 3State Key Lab of Veterinary Etiological Biology, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu, 730046, P. R. China *For correspondence: [email protected] †Contributed equally to this work and are co-first authors Received 15 October 2020; Accepted 02 March 2021; Published 10 May 2021 Abstract Adhesion is a crucial step for nematode-trapping fungi (NTF) predating nematodes. To investigate the function of a novel protein ADP1 in nematode-trapping process, ADP1 gene of a representative NTF-Arthrobotrys oligospora was cloned and the molecular characteristics of this protein were analyzed. Then, the GFP chimeric ADP1 (ADP1-GFP) was generated in a GFP expression vector and expressed in Escherichia coli BL21 (DE3) and the recombinant ADP1-GFP (reADP1-GFP) was purified. Incubation of reADP1-GFP with J3 larvae of Caenorhabditis elegans and Haemonchus contortus showed that reADP1-GFP could adhere nematodes with the strongest adhesion ability at 25°C, while the reADP1-GFP treated by trypsin completely lost the adhesion ability. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Castor, Pollux and Life Histories of Fungi'
Mycologia, 89(1), 1997, pp. 1-23. ? 1997 by The New York Botanical Garden, Bronx, NY 10458-5126 Issued 3 February 1997 Castor, Pollux and life histories of fungi' Donald H. Pfister2 1982). Nonetheless we have been indulging in this Farlow Herbarium and Library and Department of ritual since the beginning when William H. Weston Organismic and Evolutionary Biology, Harvard (1933) gave the first presidential address. His topic? University, Cambridge, Massachusetts 02138 Roland Thaxter of course. I want to take the oppor- tunity to talk about the life histories of fungi and especially those we have worked out in the family Or- Abstract: The literature on teleomorph-anamorph biliaceae. As a way to focus on the concepts of life connections in the Orbiliaceae and the position of histories, I invoke a parable of sorts. the family in the Leotiales is reviewed. 18S data show The ancient story of Castor and Pollux, the Dios- that the Orbiliaceae occupies an isolated position in curi, goes something like this: They were twin sons relationship to the other members of the Leotiales of Zeus, arising from the same egg. They carried out which have so far been studied. The following form many heroic exploits. They were inseparable in life genera have been studied in cultures derived from but each developed special individual skills. Castor ascospores of Orbiliaceae: Anguillospora, Arthrobotrys, was renowned for taming and managing horses; Pol- Dactylella, Dicranidion, Helicoon, Monacrosporium, lux was a boxer. Castor was killed and went to the Trinacrium and conidial types that are referred to as being Idriella-like. -
CATALOG of SPECIES
ARSARSARSARSARSARS ARSARS CollectionCollectionef ofof EntomopathogenicEntomopathogenic FungalFungal CulturesCultures CATALOG of SPECIES FULLY INDEXED [INCLUDES 9773 ISOLAtes] USDA-ARS Biological Integrated Pest Management Research Robert W. Holley Center for Agriculture and Health 538 Tower Road Ithaca, New York 14853-2901 28 July 2011 Search the ARSEF catalog online at http://www.ars.usda.gov/Main/docs.htm?docid=12125 ARSEF Collection Staff Richard A. Humber, Curator phone: [+1] 607-255-1276 fax: [+1] 607-255-1132 email: [email protected] Karen S. Hansen phone: [+1] 607-255-1274 fax: [+1] 607-255-1132 email: [email protected] Micheal M. Wheeler phone: [+1] 607-255-1274 fax: [+1] 607-255-1132 email: [email protected] USDA-ARS Biological IPM Research Unit Robert W. Holley Center for Agriculture & Health 538 Tower Road Ithaca, New York 14853-2901, USA IMPORTANT NOTE Recent phylogenetically based reclassifications of fungal pathogens of invertebrates Richard A. Humber Insect Mycologist and Curator, ARSEF UPDATED July 2011 Some seemingly dramatic and comparatively recent changes in the classification of a number of fungi may continue to cause confusion or a degree of discomfort to many of the clients of the cultures and informational resources provided by the ARSEF culture collection. This short treatment is an attempt to summarize some of these changes, the reasons for them, and to provide the essential references to the literature in which the changes are proposed. As the Curator of the ARSEF collection I wish to assure you that these changes are appropriate, progressive, and necessary to modernize and to stabilize the systematics of the fungal pathogens affecting insects and other invertebrates, and I urge you to adopt them into your own thinking, teaching, and publications. -
Kenneth G. Karol the Lewis B
Kenneth G. Karol The Lewis B. and Dorothy Cullman Program for Molecular Systematics Studies The New York Botanical Garden Bronx, New York 10458-5126 telephone: (718) 817-8615 e-mail: [email protected] Education Ph.D., Plant Biology. 2004. University of Maryland, College Park, MD Bachelor of Science, Botany. 1992. University of Wisconsin, Madison, WI Professional Experience Assistant Curator. 2007-Present. Cullman Program, The New York Botanical Garden, Bronx, NY Doctoral Faculty. 2007-Present. City University of New York, Plant Sciences Ph.D. Subprogram, Lehman College, Bronx, NY Chair - Phycological Section, Botanical Society of America. 2006-Present. Postdoctoral Fellow. 2006-2007. National Institutes of Health - National Research Service Award, Genomics/Biology, University of Washington, Seattle, WA LBNA Guest Researcher. 2005-present. Department of Energy Joint Genome Institute, Walnut Creek, CA Appointment runs concurrently with ongoing genome projects. Research Associate (post-doc). 2004-2006. US National Science Foundation Tree of Life Program, Biology, University of Washington, Seattle, WA Graduate Student. 1998-2004. Cell Biology and Molecular Genetics, University of Maryland, College Park, MD Research Assistant. 1999-2003. US NSF PEET Program, University of Maryland, College Park, MD Graduate Admissions Committee. 2001 & 2002. Cell Biology and Molecular Genetics, University of Maryland, College Park, MD Executive Committee. 1999-2000. Green Plant Phylogeny Research Coordination Group Biological Research Technician. 1997-1998. Laboratory of Molecular Systematics, National Museum of Natural History, Smithsonian Institution, Washington, DC Contract Researcher. 1997. Laboratory of Molecular Systematics, National Museum of Natural History, Smithsonian Institution, Smithsonian Institution, Washington, DC Research Technician. 1993-1996. Biological Sciences, DePaul University, Chicago, IL Visiting Scientist. -
Studies on the Genus Arthrobotrys
STUDIES ON THE GENUS ARTHROBOTRYS KAREN KAYE HAARD B. S., Iowa State University, 1962 A MASTER'S THESIS submitted in partial fulfillment of the requirements for the degree MASTER OF SCIENCE Department of Botany and Plant Pathology KANSAS STATE UNIVERSITY Manhattan, Kansas ACKNOWLEDGMENTS It is a sincere pleasure to acknowledge the assistance and en- couragment of Dr. C. L. Kramer, under whose careful aJid thoughtful guidance this thesis was prepared. I also acknowledge with special thanks the members of my ad- visory committee: Dr. S. M. Pady, Dr. D. J. Ameel,Dr. 0. J. Dickerson and Dr. C. L. Kramer. I also thank the Department of Botany and Plant Pathology, Kansas State University for providing the facilities for this study. — —— —— ill TABLE OF CONTENTS INTRODUCTION . 1 LITERATURE REVIEW 2 Taxonoraic Studies 2 Biological and Morphological Studies 10 METHODS AND MATERIALS 14 Isolation of Arthrobotrys — — _— —16 .Study of Isolates in Pure Culture 16 Study of Nematode Infested Cultures 18 9 Cytological Studies — —19 Photomicrographic Studies —20 RESULTS 20 PART I: THE GENUS ARTHROBOTRYS CORDA 20 Colony Characteristics — 20 Mycelium 22 Predaceous Organs '• 22 Conidiophores —— .... —...... 25 Conidiophore Development and Spore Formation 25 Conidia 26 Chlamydospores ————.....—-.- —30 PART II: TAX0N0MIC TREATMENT 30 Key to Species in Pure Culture — 31 Key to Species in Nematode Infested Culture . 33 Species of Arthrobotrys — 34 Excluded Species — ————— —— 75 DISCUSSION ! 86 CONCLUSIONS 91 SUMMARY tf 92 INDEX TO SPECIES — 94 LITERATURE CITED ! . 95 INTRODUCTION The genus Arthrobotrys Corda is found amid the predaceous Hyphomycetes of the Fungi Imperfecti. It is a small genus presently containing some twenty species some of which are apparently distributed worldwide.