Orbilia Querci Sp. Nov. and Its Knob-Forming Nematophagous Anamorph
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Evolution of Nematode-Trapping Cells of Predatory Fungi of the Orbiliaceae Based on Evidence from Rrna-Encoding DNA and Multiprotein Sequences
Evolution of nematode-trapping cells of predatory fungi of the Orbiliaceae based on evidence from rRNA-encoding DNA and multiprotein sequences Ying Yang†‡, Ence Yang†‡, Zhiqiang An§, and Xingzhong Liu†¶ †Key Laboratory of Systematic Mycology and Lichenology, Institute of Microbiology, Chinese Academy of Sciences 3A Datun Rd, Chaoyang District, Beijing 100101, China; ‡Graduate University of Chinese Academy of Sciences, Beijing 100049, China; and §Merck Research Laboratories, WP26A-4000, 770 Sumneytown Pike, West Point, PA 19486-0004 Communicated by Joan Wennstrom Bennett, Rutgers, The State University of New Jersey, New Brunswick, NJ, March 27, 2007 (received for review October 28, 2006) Among fungi, the basic life strategies are saprophytism, parasitism, These trapping devices all capture nematodes by means of an and predation. Fungi in Orbiliaceae (Ascomycota) prey on animals adhesive layer covering part or all of the device surfaces. The by means of specialized trapping structures. Five types of trapping constricting ring (CR), the fifth and most sophisticated trapping devices are recognized, but their evolutionary origins and diver- device (Fig. 1D) captures prey in a different way. When a gence are not well understood. Based on comprehensive phylo- nematode enters a CR, the three ring cells are triggered to swell genetic analysis of nucleotide sequences of three protein-coding rapidly inwards and firmly lasso the victim within 1–2 sec. genes (RNA polymerase II subunit gene, rpb2; elongation factor 1-␣ Phylogenetic analysis of ribosomal RNA gene sequences indi- ␣ gene, ef1- ; and ß tubulin gene, bt) and ribosomal DNA in the cates that fungi possessing the same trapping device are in the internal transcribed spacer region, we have demonstrated that the same clade (3, 8–11). -
CATALOG of SPECIES
ARSARSARSARSARSARS ARSARS CollectionCollectionef ofof EntomopathogenicEntomopathogenic FungalFungal CulturesCultures CATALOG of SPECIES FULLY INDEXED [INCLUDES 9773 ISOLAtes] USDA-ARS Biological Integrated Pest Management Research Robert W. Holley Center for Agriculture and Health 538 Tower Road Ithaca, New York 14853-2901 28 July 2011 Search the ARSEF catalog online at http://www.ars.usda.gov/Main/docs.htm?docid=12125 ARSEF Collection Staff Richard A. Humber, Curator phone: [+1] 607-255-1276 fax: [+1] 607-255-1132 email: [email protected] Karen S. Hansen phone: [+1] 607-255-1274 fax: [+1] 607-255-1132 email: [email protected] Micheal M. Wheeler phone: [+1] 607-255-1274 fax: [+1] 607-255-1132 email: [email protected] USDA-ARS Biological IPM Research Unit Robert W. Holley Center for Agriculture & Health 538 Tower Road Ithaca, New York 14853-2901, USA IMPORTANT NOTE Recent phylogenetically based reclassifications of fungal pathogens of invertebrates Richard A. Humber Insect Mycologist and Curator, ARSEF UPDATED July 2011 Some seemingly dramatic and comparatively recent changes in the classification of a number of fungi may continue to cause confusion or a degree of discomfort to many of the clients of the cultures and informational resources provided by the ARSEF culture collection. This short treatment is an attempt to summarize some of these changes, the reasons for them, and to provide the essential references to the literature in which the changes are proposed. As the Curator of the ARSEF collection I wish to assure you that these changes are appropriate, progressive, and necessary to modernize and to stabilize the systematics of the fungal pathogens affecting insects and other invertebrates, and I urge you to adopt them into your own thinking, teaching, and publications. -
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes
2 Pezizomycotina: Pezizomycetes, Orbiliomycetes 1 DONALD H. PFISTER CONTENTS 5. Discinaceae . 47 6. Glaziellaceae. 47 I. Introduction ................................ 35 7. Helvellaceae . 47 II. Orbiliomycetes: An Overview.............. 37 8. Karstenellaceae. 47 III. Occurrence and Distribution .............. 37 9. Morchellaceae . 47 A. Species Trapping Nematodes 10. Pezizaceae . 48 and Other Invertebrates................. 38 11. Pyronemataceae. 48 B. Saprobic Species . ................. 38 12. Rhizinaceae . 49 IV. Morphological Features .................... 38 13. Sarcoscyphaceae . 49 A. Ascomata . ........................... 38 14. Sarcosomataceae. 49 B. Asci. ..................................... 39 15. Tuberaceae . 49 C. Ascospores . ........................... 39 XIII. Growth in Culture .......................... 50 D. Paraphyses. ........................... 39 XIV. Conclusion .................................. 50 E. Septal Structures . ................. 40 References. ............................. 50 F. Nuclear Division . ................. 40 G. Anamorphic States . ................. 40 V. Reproduction ............................... 41 VI. History of Classification and Current I. Introduction Hypotheses.................................. 41 VII. Growth in Culture .......................... 41 VIII. Pezizomycetes: An Overview............... 41 Members of two classes, Orbiliomycetes and IX. Occurrence and Distribution .............. 41 Pezizomycetes, of Pezizomycotina are consis- A. Parasitic Species . ................. 42 tently shown -
Orbiliaceae from Thailand
Mycosphere 9(1): 155–168 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/1/5 Copyright © Guizhou Academy of Agricultural Sciences Orbiliaceae from Thailand Ekanayaka AH1,2, Hyde KD1,2, Jones EBG3, Zhao Q1 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, 50200, Thailand Ekanayaka AH, Hyde KD, Jones EBG, Zhao Q 2018 – Orbiliaceae from Thailand. Mycosphere 9(1), 155–168, Doi 10.5943/mycosphere/9/1/5 Abstract The family Orbiliaceae is characterized by small, yellowish, sessile to sub-stipitate apothecia, inoperculate asci and asymmetrical globose to fusoid ascospores. Morphological and phylogenetic studies were carried out on new collections of Orbiliaceae from Thailand and revealed Hyalorbilia erythrostigma, Hyalorbilia inflatula, Orbilia stipitata sp. nov., Orbilia leucostigma and Orbilia caudata. Our new species is confirmed to be divergent from other Orbiliaceae species based on morphological examination and molecular phylogenetic analyses of ITS and LSU sequence data. Descriptions and figures are provided for the taxa which are also compared with allied taxa. Key words – apothecia – discomycetes – inoperculate – phylogeny – taxonomy Introduction The family Orbiliaceae was established by Nannfeldt (1932). Previously, this family has been treated as a member of Leotiomycetes (Korf 1973, Spooner 1987) and Eriksson et al. (2003) transferred this family into a new class Orbiliomycetes. The recent studies on this class include Yu et al. (2011), Guo et al. -
A Reevaluation of Predatory Orbiliaceous Fungi. II. a New Generic Concept
©Verlag Ferdinand Berger & Söhne Ges.m.b.H., Horn, Austria, download unter www.biologiezentrum.at A reevaluation of predatory orbiliaceous fungi. II. A new generic concept Markus Scholler1, Gregor Hagedorn2 & A. Rubner1 Fachrichtung Biologie, Mykologisches Labor, Universität Greifswald, Jahn-Str. 15, 17487 Greifswald, Germany 2Institut für Pflanzenvirologie, Mikrobiologie und Biologische Sicherheit, Biologische Bundesanstalt für Land- und Forstwirtschaft, Königin-Luise-Str. 19, 14195 Berlin, Germany M. Scholler, G. Hagedorn & A. Rubner (1999). A reevaluation of predatory orbiliaceous fungi. II. A new generic concept. - Sydowia 51(1): 89-113. A new genus concept is proposed for predatory anamorphic Orbiliaceae in which the trapping device is the main morphological criterion for the delimitation of the genera. Molecular, ecological, physiological, biological, and further mor- phological features are taken into account as well. Following the groups identified by Hagedorn & Scholler (1999), these predatory fungi are divided into four genera: Arthrobotrys Corda forming adhesive networks, Drechslerella Subram. forming constricting rings, Dactylellina M. Morelet forming stalked adhesive knobs, and Gamsylella gen. nov. for species producing adhesive columns and unstalked knobs. Eighty-two species are accepted, for 51 of which new combinations are proposed. Keywords: Nematophagous fungi, Orbiliaceae, Arlhrobolrys, Daclylellina, Drechslerella, Gamsylella gen. nov, trapping devices, taxonomy. Present generic and phylogenetic concepts for predatory -
Emergence and Loss of Spliceosomal Twin Introns
Flipphi et al. Fungal Biol Biotechnol (2017) 4:7 DOI 10.1186/s40694-017-0037-y Fungal Biology and Biotechnology RESEARCH Open Access Emergence and loss of spliceosomal twin introns Michel Flipphi1, Norbert Ág1, Levente Karafa1, Napsugár Kavalecz1, Gustavo Cerqueira2, Claudio Scazzocchio3,4 and Erzsébet Fekete1* Abstract Background: In the primary transcript of nuclear genes, coding sequences—exons—usually alternate with non- coding sequences—introns. In the evolution of spliceosomal intron–exon structure, extant intron positions can be abandoned and new intron positions can be occupied. Spliceosomal twin introns (“stwintrons”) are unconventional intervening sequences where a standard “internal” intron interrupts a canonical splicing motif of a second, “external” intron. The availability of genome sequences of more than a thousand species of fungi provides a unique opportunity to study spliceosomal intron evolution throughout a whole kingdom by means of molecular phylogenetics. Results: A new stwintron was encountered in Aspergillus nidulans and Aspergillus niger. It is present across three classes of Leotiomyceta in the transcript of a well-conserved gene encoding a putative lipase (lipS). It occupies the same position as a standard intron in the orthologue gene in species of the early divergent classes of the Pezizomy- cetes and the Orbiliomycetes, suggesting that an internal intron has appeared within a pre-extant intron. On the other hand, the stwintron has been lost from certain taxa in Leotiomycetes and Eurotiomycetes at several occa- sions, most likely by a mechanism involving reverse transcription and homologous recombination. Another ancient stwintron present across whole Pezizomycotina orders—in the transcript of the bifunctional biotin biosynthesis gene bioDA—occurs at the same position as a standard intron in many species of non-Dikarya. -
The Conservation of Polyol Transporter Proteins and Their Involvement in Lichenized Ascomycota
Fungal Biology 123 (2019) 318e329 Contents lists available at ScienceDirect Fungal Biology journal homepage: www.elsevier.com/locate/funbio The conservation of polyol transporter proteins and their involvement in lichenized Ascomycota Kanami Yoshino a, Kohei Yamamoto b, Kojiro Hara c, Masatoshi Sonoda a, * Yoshikazu Yamamoto c, Kazunori Sakamoto a, a Division of Environmental Horticulture, Graduate School of Horticulture, Chiba University, 648 Matsudo, Matsudo, Chiba, 271-0092, Japan b Tochigi Prefectural Museum, 2-2 Mutsumi-cho, Utsunomiya, Tochigi, 320-0865, Japan c Faculty of Bioresource Sciences, Akita Prefectural University, 241-438 Kaidobata-nishi, Shimoshinjo-nakano, Akita, 010-0195, Japan article info abstract Article history: In lichen symbiosis, polyol transfer from green algae is important for acquiring the fungal carbon source. Received 4 June 2018 However, the existence of polyol transporter genes and their correlation with lichenization remain un- Received in revised form clear. Here, we report candidate polyol transporter genes selected from the genome of the lichen- 30 December 2018 forming fungus (LFF) Ramalina conduplicans. A phylogenetic analysis using characterized polyol and Accepted 21 January 2019 monosaccharide transporter proteins and hypothetical polyol transporter proteins of R. conduplicans and Available online 31 January 2019 various ascomycetous fungi suggested that the characterized yeast’ polyol transporters form multiple Corresponding Editor: Martin Grube clades with the polyol transporter-like proteins selected from the diverse ascomycetous taxa. Thus, polyol transporter genes are widely conserved among Ascomycota, regardless of lichen-forming status. In Keywords: addition, the phylogenetic clusters suggested that LFFs belonging to Lecanoromycetes have duplicated Gene duplication proteins in each cluster. Consequently, the number of sequences similar to characterized yeast’ polyol Genome transporters were evaluated using the genomes of 472 species or strains of Ascomycota. -
Towards Incorporating Asexual Fungi in a Natural Classification: Checklist and Notes 2012–2016
Mycosphere 8(9): 1457–1555 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/9/10 Copyright © Guizhou Academy of Agricultural Sciences Towards incorporating asexual fungi in a natural classification: checklist and notes 2012–2016 Wijayawardene NN1,2, Hyde KD2, Tibpromma S2, Wanasinghe DN2, Thambugala KM2, Tian Q2, Wang Y3, Fu L1 1 Shandong Institute of Pomologe, Taian, Shandong Province, 271000, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, People’s Republic of China Wijayawardene NN, Hyde KD, Tibpromma S, Wanasinghe DN, Thambugala KM, Tian Q, Wang Y 2017 – Towards incorporating asexual fungi in a natural classification: checklist and notes 2012– 2016. Mycosphere 8(9), 1457–1555, Doi 10.5943/mycosphere/8/9/10 Abstract Incorporating asexual genera in a natural classification system and proposing one name for pleomorphic genera are important topics in the current era of mycology. Recently, several polyphyletic genera have been restricted to a single family, linked with a single sexual morph or spilt into several unrelated genera. Thus, updating existing data bases and check lists is essential to stay abreast of these recent advanes. In this paper, we update the existing outline of asexual genera and provide taxonomic notes for asexual genera which have been introduced since 2012. Approximately, 320 genera have been reported or linked with a sexual morph, but most genera lack sexual morphs. Keywords – Article 59.1 – Coelomycetous – Hyphomycetous – One name – Pleomorphism Introduction The recent outlines and monographs of different taxonomic groups (including artificial groups i.e. -
PORTADA Puente Biologico
ISSN1991-2986 RevistaCientíficadelaUniversidad AutónomadeChiriquíenPanamá Polyporus sp.attheQuetzalestrailintheVolcánBarúNationalPark,Panamá Volume1/2006 ChecklistofFungiinPanama elaboratedinthecontextoftheUniversityPartnership ofthe UNIVERSIDAD AUTÓNOMA DECHIRIQUÍ and J.W.GOETHE-UNIVERSITÄT FRANKFURT AMMAIN supportedbytheGerman AcademicExchangeService(DAAD) For this publication we received support by the following institutions: Universidad Autónoma de Chiriquí (UNACHI) J. W. Goethe-Universität Frankfurt am Main German Academic Exchange Service (DAAD) German Research Foundation (DFG) Deutsche Gesellschaft für Technische Zusammenarbeit (GTZ)1 German Federal Ministry for Economic Cooperation and Development (BMZ)2 Instituto de Investigaciones Científicas Avanzadas 3 y Servicios de Alta Tecnología (INDICASAT) 1 Deutsche Gesellschaft für Technische Zusammenarbeit (GTZ) GmbH Convention Project "Implementing the Biodiversity Convention" P.O. Box 5180, 65726 Eschborn, Germany Tel.: +49 (6196) 791359, Fax: +49 (6196) 79801359 http://www.gtz.de/biodiv 2 En el nombre del Ministerio Federal Alemán para la Cooperación Económica y el Desarollo (BMZ). Las opiniones vertidas en la presente publicación no necesariamente reflejan las del BMZ o de la GTZ. 3 INDICASAT, Ciudad del Saber, Clayton, Edificio 175. Panamá. Tel. (507) 3170012, Fax (507) 3171043 Editorial La Revista Natura fue fundada con el objetivo de dar a conocer las actividades de investigación de la Facultad de Ciencias Naturales y Exactas de la Universidad Autónoma de Chiriquí (UNACHI), pero COORDINADORADE EDICIÓN paulatinamente ha ampliado su ámbito geográfico, de allí que el Comité Editorial ha acordado cambiar el nombre de la revista al Clotilde Arrocha nuevo título:PUENTE BIOLÓGICO , para señalar así el inicio de una nueva serie que conserva el énfasis en temas científicos, que COMITÉ EDITORIAL trascienden al ámbito internacional. Puente Biológico se presenta a la comunidad científica Clotilde Arrocha internacional con este número especial, que brinda los resultados Pedro A.CaballeroR. -
Baral Et Al. 2020: Monograph of Orbiliomycetes – Supplementary Phylogenetic Analyses
Baral et al. 2020: Monograph of Orbiliomycetes – Supplementary phylogenetic analyses 69 DQ471001 Orbilia sp.(as A. psychrophila) AFTOL-ID 906, CBS 547.63 (UK, Staffordshire, soil) 67 AJ001987 Orbilia sp. (as A. oligospora) CBS 289.82 (France, Meloidogyne) FJ176810 Orbilia elegans CBS 397.93, AFTOLID 1252 (Sweden, Skaane, soil under Salix) 71 AJ001988 Arthrobotrys pyriformis (as A. robusta) A.R. 9327, CBS 340.94 (Germany, Berlin, Sorbus) AJ001989 Arthrobotrys superbus CBS 107.81, ATCC 28922 (Belgium, Wallonia, bark) 63 AF006307 Arthrobotrys cf. superbus (as O. fimicola) D.H.P. 60 (USA, Massachusetts, Capreolus dung) 83 HM101142 Arthrobotrys superbus (as Diderma testaceum) (?China) AJ001985 Arthrobotrys musiformis (as A. conoides) CBS 266.83, ATCC 28705 (Nigeria, Vigna) AJ001998 Orbilia elegans (as M. psychrophilum) L9203 (unlocalised) HM101139 Orbilia oligospora (as Physarum globuliferum) (?China) AJ001986 Orbilia oligospora ATCC 24927, CBS 115.81 (Sweden, soil, ET) AJ001983 Orbilia oligospora (as A. conoides and A. superba) CBS 109.52 79 JQ809337 Orbilia oligospora XAo1 (China, Xinjiang) subgenus U72598 Orbilia oligospora DHP 55, H.B. 5442 (USA, Massachusetts, lichen thallus) Orbilia AJ001996 Gamsylella gephyropaga CBS 178.37 (USA, unlocalised, T) AJ001991 Arthrobotrys flagrans CBS 565.50, ATCC 13423 (UK, vegetable compost) 99 AJ001895 Arthrobotrys flagrans (unlocalised) AY902788 Orbilia lysipaga (as Dactylellina sichuanensis) YMF1.00023 (China, Sichuan, soil, T) EU573356 Arthrobotrys mangrovisporus MGDW17 (China, Hong Kong, mangrove, T) EU107342 Arthrobotrys thaumasius P030, CBS 132.42 (Netherlands, Spinacia, root) EU107340 Arthrobotrys eudermatus P059, CBS 110116 (Western Australia, Perth, leaf litter, aquatic) AJ001990 Dactylellina haptotyla (as Dactylella candida) M.P.P. A2/19, CBS 200.50 (UK, leaf in pond) Orbilia 63 EU107343 Dactylella clavata P061 AJ001995 Orbilia ellipsospora M.P.P. -
An Online Resource for Marine Fungi
Fungal Diversity https://doi.org/10.1007/s13225-019-00426-5 (0123456789().,-volV)(0123456789().,- volV) An online resource for marine fungi 1,2 3 1,4 5 6 E. B. Gareth Jones • Ka-Lai Pang • Mohamed A. Abdel-Wahab • Bettina Scholz • Kevin D. Hyde • 7,8 9 10 11 12 Teun Boekhout • Rainer Ebel • Mostafa E. Rateb • Linda Henderson • Jariya Sakayaroj • 13 6 6,17 14 Satinee Suetrong • Monika C. Dayarathne • Vinit Kumar • Seshagiri Raghukumar • 15 1 16 6 K. R. Sridhar • Ali H. A. Bahkali • Frank H. Gleason • Chada Norphanphoun Received: 3 January 2019 / Accepted: 20 April 2019 Ó School of Science 2019 Abstract Index Fungorum, Species Fungorum and MycoBank are the key fungal nomenclature and taxonomic databases that can be sourced to find taxonomic details concerning fungi, while DNA sequence data can be sourced from the NCBI, EBI and UNITE databases. Nomenclature and ecological data on freshwater fungi can be accessed on http://fungi.life.illinois.edu/, while http://www.marinespecies.org/provides a comprehensive list of names of marine organisms, including information on their synonymy. Previous websites however have little information on marine fungi and their ecology, beside articles that deal with marine fungi, especially those published in the nineteenth and early twentieth centuries may not be accessible to those working in third world countries. To address this problem, a new website www.marinefungi.org was set up and is introduced in this paper. This website provides a search facility to genera of marine fungi, full species descriptions, key to species and illustrations, an up to date classification of all recorded marine fungi which includes all fungal groups (Ascomycota, Basidiomycota, Blastocladiomycota, Chytridiomycota, Mucoromycota and fungus-like organisms e.g. -
Towards Incorporating Asexually Reproducing Fungi in the Natural Classification and Notes for Pleomorphic Genera
Mycosphere 12(1): 238–405 (2021) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/12/1/4 Towards incorporating asexually reproducing fungi in the natural classification and notes for pleomorphic genera Wijayawardene NN1,2,3, Hyde KD4, Anand G5, Dissanayake LS6, Tang LZ1,* and Dai DQ1,* 1Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, P.R. China 2State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University, Guiyang 550014, P.R. China 3Section of Genetics, Institute for Research and Development in Health and Social Care No: 393/3, Lily Avenue, Off Robert Gunawardane Mawatha, Battaramulla 10120, Sri Lanka4Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 5Department of Botany, University of Delhi, Delhi-110007, India 6The Engineering Research Center of Southwest Bio–Pharmaceutical Resource Ministry of Education, Guizhou University, Guiyang 550025, Guizhou Province, P.R. China Wijayawardene NN, Hyde KD, Anand G, Dissanayake LS, Tang LZ, Dai DQ 2021 – Towards incorporating asexually reproducing fungi in the natural classification and notes for pleomorphic genera. Mycosphere 12(1), 238–405, Doi 10.5943/mycosphere/12/1/4 Abstract This is a continuation of a series of studies incorporating asexually reproducing fungi in a natural classification. Over 3653 genera (ca. 30,000 morphological species) are known from asexual reproduction (1388 coelomycetes and 2265 hyphomycetes) in their life cycle. Among these, 687 genera are pleomorphic (305 coelomycetous; 378 hyphomycetous and four genera show both coelomycetous and hyphomycetous morphs). We provide notes for these pleomorphic genera in this paper.