CATALOG of SPECIES
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ARSARSARSARSARSARS ARSARS CollectionCollectionef ofof EntomopathogenicEntomopathogenic FungalFungal CulturesCultures CATALOG of SPECIES FULLY INDEXED [INCLUDES 9773 ISOLAtes] USDA-ARS Biological Integrated Pest Management Research Robert W. Holley Center for Agriculture and Health 538 Tower Road Ithaca, New York 14853-2901 28 July 2011 Search the ARSEF catalog online at http://www.ars.usda.gov/Main/docs.htm?docid=12125 ARSEF Collection Staff Richard A. Humber, Curator phone: [+1] 607-255-1276 fax: [+1] 607-255-1132 email: [email protected] Karen S. Hansen phone: [+1] 607-255-1274 fax: [+1] 607-255-1132 email: [email protected] Micheal M. Wheeler phone: [+1] 607-255-1274 fax: [+1] 607-255-1132 email: [email protected] USDA-ARS Biological IPM Research Unit Robert W. Holley Center for Agriculture & Health 538 Tower Road Ithaca, New York 14853-2901, USA IMPORTANT NOTE Recent phylogenetically based reclassifications of fungal pathogens of invertebrates Richard A. Humber Insect Mycologist and Curator, ARSEF UPDATED July 2011 Some seemingly dramatic and comparatively recent changes in the classification of a number of fungi may continue to cause confusion or a degree of discomfort to many of the clients of the cultures and informational resources provided by the ARSEF culture collection. This short treatment is an attempt to summarize some of these changes, the reasons for them, and to provide the essential references to the literature in which the changes are proposed. As the Curator of the ARSEF collection I wish to assure you that these changes are appropriate, progressive, and necessary to modernize and to stabilize the systematics of the fungal pathogens affecting insects and other invertebrates, and I urge you to adopt them into your own thinking, teaching, and publications. The identifications in the ARSEF catalogs (http://www.ars.usda.gov/Main/docs.htm?docid=12125) incorporate these new classifications as soon as we can confirm the correct new identifications of fungi and, where genera or species are being split on molecular grounds, to determine and to apply the correct new identifications. General Reclassification of Fungi The results of a global cooperative effort involving dozens of mycologists (including the curator of this collection) to reclassify the fungi according to phylogenetically sound principles based on the DNA sequence data for multiple genes has recently resulted in the publication of two monumentally important publications that completely rework mycological systematics. The earlier publications was a phylogenetic overview of virtually all fungi (James et al. 2006). The second publication (Hibbett et al. 2007) provided the necessary taxonomic readjustments that were indicated by the phylogenetic studies. Microsporidia Many mycologists and invertebrate pathologists are now aware that the Microsporidia have been proven beyond any reasonable doubt to be comparatively recent and highly derived endobiotic fungi. They are neither extremely ancient eukaryotes nor affiliated with protozoans as most textbooks indicate. None of this realignment to the fungi is being disputed by either microsporidiologists or phylogenetic mycologists. The rationale for this realignment is presented succinctly in James et al. (2006). These fascinating organisms connect to the fungal tree of life at the base of the nonflagellate fungi (among or near the fungi traditionally treated as the Zygomycota) but their exact affinities and nearest remain uncertain. Zygomycota, Zygomycotina, Zygomycetes and Entomophthorales The phylogenetic relassification of fungi (Hibbett et al., 2007) significantly modified the traditional view of the most ancestral nonflagellate fungi. The phylum Zygomycota, subphylum Zygomycotina, and class Zygomycetes disappeared in their widely understood sense to be replaced by the phylum Glomeromycota (for arbuscular mycorrhizal fungi) and a series of new subphyla not yet assigned to any phylum (because of the obviously polyphyletic nature of the zygomycetes as traditionally treated). The Entomophthorales is reclassified in the subphylum Entomophthoromycotina Humber (in Hibbett et al. 2007); the other new subphyla in this group are the Mucormycotina, Zoopagomycotina and Kicxellomycotina. Where there had been some question about whether Basidiobolus and its close relatives should be retained in the Entomophthorales or moved to a position closer to some of the blastocladialean watermolds, James et al. (2006) unequivocally retain Basidiobolus in an ancestral position in the Entomophthorales. i Despite the short-term frustration of needing to deal with fungi belonging to these groups that the familiar concepts of Zygomycota, Zygomycotina and Zygomycetes are new abandoned. Until such a time as the molecular studies clarify the overall relationships among these fungi and establish a new set of phyla, my practical advice to the clientele of the ARSEF culture collection is to continue to use these discontinued phylum, subphylum and class names since (1) their meanings remain unambiguous in terms of the fungi included, and (2) journals and other outlets may remain unwilling or unable for some time still to handle the concepts of new subphyla with unassigned status (‘incertae sedis’). Entomopathogenic Ascomycetes and Associated Anamorphic (Conidial) States Among all of the major taxonomic changes within the fungi that affect entomopathogenic fungi, the most dramatic and far-reaching involve the ascomycetes and their conidial (anamorphic) states classified among the pyrenomycetous fungi of the order Hypocreales. In one of the first major changes to be noted, those ascomycetous entomopathogens whose asci are produced in perithecia (nearly closed spherical to flask-like fruiting bodies) are now put in the class Sordariomycetes, a name based on a valid generic name, rather than in the historically familiar class Pyrenomycetes, a name based on the morphology of the fruiting body. The great majority of these fungi have long been recognized to belong in the family Clavicipitaceae (mostly in the genera Cordyceps, Torrubiella or Hypocrella). A major phylogenetic reclassification of the Clavicipitaceae (Sung et al. 2007; available free of charge at http://www.studiesinmycology.org) has split this family into three (Table 1), a long overdue major reworking of the taxonomy of Cordyceps and, subsequently, a reshuffling of anamorphic states among these families. This publication by Sung et al. (2007) is very long and complex since it includes a highly detailed phylogenetic analysis of these fungi as well as presenting the new taxonomy, descriptions of new families, genera, and species, and a very large number of new combinations (mostly segregating Cordyceps into their newly described segregate genera), and listing of the known or suspected anamorphic states associated with these taxa. Note that Table 1 shows Torrubiella to be split between two families. This is an untenable position in a phylogenetically based classification that requires all taxa to represent monophyletic lineages. Future phylogenetic studies that will result in the reclassification of Torrubiella are obviously required. Also note that some anamorphic states with morphologies referable to Hirsutella, Paecilomyces and Verticillium (the latter two genera in their old senses from before recent phylogenetic reclassifications discussed below may occur in more than one family; this underscores the need to regard anamorphic states as being named in form-genera defined only by their morphologies and similar modes of development rather than by phylogenetic relatedness. Table 1. Summary of some major teleomorphic (sexual) and anamorphic (conidial) genera of Hypocreales pathogenic to invertebrates (Sung et al. 2007). FAMILY Clavicipitaceae Cordycipitaceae Ophiocordycipitaceae Teleomorphs: Hypocrella, Metacordyceps, Cordyceps s.str., Ophiocordyceps, Regiocrella, Torrubiella Torrubiella Elaphocordyceps Anamorphs: Aschersonia, Metarhizium, Beauveria, Engyodontium, Haptocillium, Harposporium, Nomuraea, Paecilomyces-like1, Isaria, Lecanicillium, Hirsutella, Hymenostilbe, Pochonia, Rotiferophthora, Mariannaea-like, Paraisaria, Purpureocillium Verticillium-like2 Microhilum, Simplicillium Sorosporella, Syngliocladium, Tolypocladium, Verticillium-like2 1 Species formerly in Paecilomyces sect. Isarioidea, now excluded from Paecilomyces in the strict sense but also from Isaria (which now includes most entomogenous species transferred from Paecilomyces). 2 Species formerly in Verticillium sect. Prostrata, now excluded from Verticillium in the strict sense but not yet reclassified in the segregate genera recognized by Zare and Gams (see below). ii Table 2. Publications eliminating and reclassifying Verticillium section Prostrata PART AUTHORS SUBJECT COVERED _ 1 Zare, Gams & Culham (2000) ITS sequence analyses 2 Sung, Spatafora et al. (2001) SSU, LSU rDNA sequence analyses 3 Gams, Zare (2001) Generic reclassification 4 Zare, Gams (2001) Lecanicillium and Simplicillium monograph 5 Zare, Gams, Evans (2001) Pochonia, Rotiferophthora monograph 6 Zare, Gams (2001) Haptocillium monograph Table 3. Current phylogenetically based classification within Hypocreales of some species formerly classified in Paecilomyces sect. Isarioidea (following Luangsa-ard et al. 2005; Sung et al. 2007; Luangsa-ard et al. 2011) FAMILY GENUS INCLUDED SPECIES Clavicipitaceae ‘Paecilomyces’ 1 carneus, marquandii Cordycipitaceae Isaria amoenorosea, cateniannulata, cateniobliqua, cicadae, coleopterora, farinosa, fumosorosea,