Disintegrin, Hemorrhagic, and Proteolytic Activities of Mohave Rattlesnake, Crotalus Scutulatus Scutulatus Venoms Lacking Mojave Toxin
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(12) United States Patent (10) Patent No.: US 6,395,889 B1 Robison (45) Date of Patent: May 28, 2002
USOO6395889B1 (12) United States Patent (10) Patent No.: US 6,395,889 B1 Robison (45) Date of Patent: May 28, 2002 (54) NUCLEIC ACID MOLECULES ENCODING WO WO-98/56804 A1 * 12/1998 ........... CO7H/21/02 HUMAN PROTEASE HOMOLOGS WO WO-99/0785.0 A1 * 2/1999 ... C12N/15/12 WO WO-99/37660 A1 * 7/1999 ........... CO7H/21/04 (75) Inventor: fish E. Robison, Wilmington, MA OTHER PUBLICATIONS Vazquez, F., et al., 1999, “METH-1, a human ortholog of (73) Assignee: Millennium Pharmaceuticals, Inc., ADAMTS-1, and METH-2 are members of a new family of Cambridge, MA (US) proteins with angio-inhibitory activity', The Journal of c: - 0 Biological Chemistry, vol. 274, No. 33, pp. 23349–23357.* (*) Notice: Subject to any disclaimer, the term of this Descriptors of Protease Classes in Prosite and Pfam Data patent is extended or adjusted under 35 bases. U.S.C. 154(b) by 0 days. * cited by examiner (21) Appl. No.: 09/392, 184 Primary Examiner Ponnathapu Achutamurthy (22) Filed: Sep. 9, 1999 ASSistant Examiner William W. Moore (51) Int. Cl." C12N 15/57; C12N 15/12; (74) Attorney, Agent, or Firm-Alston & Bird LLP C12N 9/64; C12N 15/79 (57) ABSTRACT (52) U.S. Cl. .................... 536/23.2; 536/23.5; 435/69.1; 435/252.3; 435/320.1 The invention relates to polynucleotides encoding newly (58) Field of Search ............................... 536,232,235. identified protease homologs. The invention also relates to 435/6, 226, 69.1, 252.3 the proteases. The invention further relates to methods using s s s/ - - -us the protease polypeptides and polynucleotides as a target for (56) References Cited diagnosis and treatment in protease-mediated disorders. -
Proquest Dissertations
Ecology and conservation of the twin- spotted rattlesnake, Crotalus pricei Item Type text; Thesis-Reproduction (electronic) Authors Prival, David Benjamin Publisher The University of Arizona. Rights Copyright © is held by the author. Digital access to this material is made possible by the University Libraries, University of Arizona. Further transmission, reproduction or presentation (such as public display or performance) of protected items is prohibited except with permission of the author. Download date 28/09/2021 01:08:24 Link to Item http://hdl.handle.net/10150/278752 INFORMATiON TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overiaps. Photographs included in the original manuscript have been reproduced xerographically in this copy. Higher quality 6" x 9" black and white photographic prints are available for any photographs or illustrations appearing in this copy for an additional charge. -
Serine Proteases with Altered Sensitivity to Activity-Modulating
(19) & (11) EP 2 045 321 A2 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 08.04.2009 Bulletin 2009/15 C12N 9/00 (2006.01) C12N 15/00 (2006.01) C12Q 1/37 (2006.01) (21) Application number: 09150549.5 (22) Date of filing: 26.05.2006 (84) Designated Contracting States: • Haupts, Ulrich AT BE BG CH CY CZ DE DK EE ES FI FR GB GR 51519 Odenthal (DE) HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI • Coco, Wayne SK TR 50737 Köln (DE) •Tebbe, Jan (30) Priority: 27.05.2005 EP 05104543 50733 Köln (DE) • Votsmeier, Christian (62) Document number(s) of the earlier application(s) in 50259 Pulheim (DE) accordance with Art. 76 EPC: • Scheidig, Andreas 06763303.2 / 1 883 696 50823 Köln (DE) (71) Applicant: Direvo Biotech AG (74) Representative: von Kreisler Selting Werner 50829 Köln (DE) Patentanwälte P.O. Box 10 22 41 (72) Inventors: 50462 Köln (DE) • Koltermann, André 82057 Icking (DE) Remarks: • Kettling, Ulrich This application was filed on 14-01-2009 as a 81477 München (DE) divisional application to the application mentioned under INID code 62. (54) Serine proteases with altered sensitivity to activity-modulating substances (57) The present invention provides variants of ser- screening of the library in the presence of one or several ine proteases of the S1 class with altered sensitivity to activity-modulating substances, selection of variants with one or more activity-modulating substances. A method altered sensitivity to one or several activity-modulating for the generation of such proteases is disclosed, com- substances and isolation of those polynucleotide se- prising the provision of a protease library encoding poly- quences that encode for the selected variants. -
Patterns in Protein Components Present in Rattlesnake Venom: a Meta-Analysis
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 1 September 2020 doi:10.20944/preprints202009.0012.v1 Article Patterns in Protein Components Present in Rattlesnake Venom: A Meta-Analysis Anant Deshwal1*, Phuc Phan2*, Ragupathy Kannan3, Suresh Kumar Thallapuranam2,# 1 Division of Biology, University of Tennessee, Knoxville 2 Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville 3 Department of Biological Sciences, University of Arkansas, Fort Smith, Arkansas # Correspondence: [email protected] * These authors contributed equally to this work Abstract: The specificity and potency of venom components gives them a unique advantage in development of various pharmaceutical drugs. Though venom is a cocktail of proteins rarely is the synergy and association between various venom components studied. Understanding the relationship between various components is critical in medical research. Using meta-analysis, we found underlying patterns and associations in the appearance of the toxin families. For Crotalus, Dis has the most associations with the following toxins: PDE; BPP; CRL; CRiSP; LAAO; SVMP P-I & LAAO; SVMP P-III and LAAO. In Sistrurus venom CTL and NGF had most associations. These associations can be used to predict presence of proteins in novel venom and to understand synergies between venom components for enhanced bioactivity. Using this approach, the need to revisit classification of proteins as major components or minor components is highlighted. The revised classification of venom components needs to be based on ubiquity, bioactivity, number of associations and synergies. The revised classification will help in increased research on venom components such as NGF which have high medical importance. Keywords: Rattlesnake; Crotalus; Sistrurus; Venom; Toxin; Association Key Contribution: This article explores the patterns of appearance of venom components of two rattlesnake genera: Crotalus and Sistrurus to determine the associations between toxin families. -
Crotalus Cerastes (Hallowell, 1854) (Squamata, Viperidae)
Herpetology Notes, volume 9: 55-58 (2016) (published online on 17 February 2016) Arboreal behaviours of Crotalus cerastes (Hallowell, 1854) (Squamata, Viperidae) Andrew D. Walde1,*, Andrea Currylow2, Angela M. Walde1 and Joel Strong3 Crotalus cerastes (Hallowell, 1854) is a small study area has no uninterrupted sandy areas outside of horned rattlesnake that ranges throughout most of the ephemeral washes, and no dune-like habitats. It is in deserts of southwestern United States, and south into this scrub-like habitat that we made three observations northern Mexico (Ernst and Ernst, 2003). This species of the previously undocumented arboreal behaviour of is considered to be a psammophilous (sand-dune) C. cerastes. specialist, typically inhabiting loose sand habitats and On 7 April 2005 at 1618h, we observed an adult C. dune blowouts (Ernst and Ernst, 2003). Although C. cerastes coiled in an A. dumosa shrub approximately 25 cerastes is primarily a nocturnal snake, it is known to cm above the ground (Fig. 1 A). The air temperature be active diurnally in the spring, and to bask in early was 21 °C and ground temperature was 27 °C. The morning or late afternoon (Ernst and Ernst, 2003). snake did not attempt to flee at our approach, but did This rattlesnake species exhibits a unique style of reposition slightly in the branches. A second observation locomotion known as sidewinding, from which it occurred on 18 April 2005 at 1036h, when we observed derives its common name, Sidewinder. Sidewinding is another adult C. cerastes extending the anterior third of believed to be an adaptation to efficiently move in loose its body beyond the top of an A. -
Handbook of Proteolytic Enzymes Second Edition Volume 1 Aspartic and Metallo Peptidases
Handbook of Proteolytic Enzymes Second Edition Volume 1 Aspartic and Metallo Peptidases Alan J. Barrett Neil D. Rawlings J. Fred Woessner Editor biographies xxi Contributors xxiii Preface xxxi Introduction ' Abbreviations xxxvii ASPARTIC PEPTIDASES Introduction 1 Aspartic peptidases and their clans 3 2 Catalytic pathway of aspartic peptidases 12 Clan AA Family Al 3 Pepsin A 19 4 Pepsin B 28 5 Chymosin 29 6 Cathepsin E 33 7 Gastricsin 38 8 Cathepsin D 43 9 Napsin A 52 10 Renin 54 11 Mouse submandibular renin 62 12 Memapsin 1 64 13 Memapsin 2 66 14 Plasmepsins 70 15 Plasmepsin II 73 16 Tick heme-binding aspartic proteinase 76 17 Phytepsin 77 18 Nepenthesin 85 19 Saccharopepsin 87 20 Neurosporapepsin 90 21 Acrocylindropepsin 9 1 22 Aspergillopepsin I 92 23 Penicillopepsin 99 24 Endothiapepsin 104 25 Rhizopuspepsin 108 26 Mucorpepsin 11 1 27 Polyporopepsin 113 28 Candidapepsin 115 29 Candiparapsin 120 30 Canditropsin 123 31 Syncephapepsin 125 32 Barrierpepsin 126 33 Yapsin 1 128 34 Yapsin 2 132 35 Yapsin A 133 36 Pregnancy-associated glycoproteins 135 37 Pepsin F 137 38 Rhodotorulapepsin 139 39 Cladosporopepsin 140 40 Pycnoporopepsin 141 Family A2 and others 41 Human immunodeficiency virus 1 retropepsin 144 42 Human immunodeficiency virus 2 retropepsin 154 43 Simian immunodeficiency virus retropepsin 158 44 Equine infectious anemia virus retropepsin 160 45 Rous sarcoma virus retropepsin and avian myeloblastosis virus retropepsin 163 46 Human T-cell leukemia virus type I (HTLV-I) retropepsin 166 47 Bovine leukemia virus retropepsin 169 48 -
Structural, Functional and Therapeutic Aspects of Snake Venom Metal- Loproteinases
Send Orders for Reprints to [email protected] 28 Mini-Reviews in Organic Chemistry, 2014, 11, 28-44 Structural, Functional and Therapeutic Aspects of Snake Venom Metal- loproteinases P. Chellapandi* Department of Bioinformatics, School of Life Sciences, Bharathidasan University, Tiruchirappalli-620024, Tamil Nadu, India Abstract: Snake venoms are rich sources of metalloproteinases that are of biological interest due to their diverse molecu- lar diversity and selective therapeutic applications. Snake venoms metalloproteinases (SVMPs) belong to the MEROPS peptidase family M12B or reprolysin subfamily, which are consisted of four major domains include a reprolysin catalytic domain, a disintegrin domain, a reprolysin family propeptide domain and a cysteine-rich domain. The appropriate struc- tural and massive sequences information have been available for SVMPs family of enzymes in the Protein Data Bank and National Center for Biotechnology Information, respectively. Functional essentiality of every domain and a crucial contri- bution of binding geometry, primary specificity site, and structural motifs have been studied in details, pointing the way for designing potential anti-coagulation, antitumor, anti-complementary and anti-inflammatory drugs or peptides. These enzymes have been reported to degrade fibrinogen, fibrin and collagens, and to prevent progression of clot formation. An- giotensin-converting enzyme activity, antibacterial properties, haemorrhagic activity and platelet aggregation response of SVMPs have been studied earlier. Structural information of these enzymes together with recombinant DNA technology would strongly promote the construction of many recombinant therapeutic peptides, particularly fibrinogenases and vac- cines. We have comprehensively reviewed the structure-function-evolution relationships of SVMPs family proteins and their advances in the promising target models for structure-based inhibitors and peptides design. -
Genetic Basis for Variation of Metalloproteinase-Associated Biochemical Activity in Venom of the Mojave Rattlesnake (Crotalus Scutulatus Scutulatus)
Hindawi Publishing Corporation Biochemistry Research International Volume 2013, Article ID 251474, 11 pages http://dx.doi.org/10.1155/2013/251474 Research Article Genetic Basis for Variation of Metalloproteinase-Associated Biochemical Activity in Venom of the Mojave Rattlesnake (Crotalus scutulatus scutulatus) Ruben K. Dagda,1 Sardar Gasanov,2 Ysidro De La OIII,3 Eppie D. Rael,3 and Carl S. Lieb3 1 Pharmacology Department, University of Nevada School of Medicine, Manville Building 19A, Reno, NV 89557, USA 2 Science Department, Tashkent Ulugbek International School, 5-A J. Shoshiy Street, 100100 Tashkent, Uzbekistan 3 Department of Biological Sciences, University of Texas at El Paso, 500 West University Avenue, El Paso, TX 79968, USA Correspondence should be addressed to Ruben K. Dagda; [email protected] Received 26 April 2013; Accepted 25 June 2013 AcademicEditor:R.J.Linhardt Copyright © 2013 Ruben K. Dagda et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The metalloproteinase composition and biochemical profiles of rattlesnake venom can be highly variable among rattlesnakes ofthe same species. We have previously shown that the neurotoxic properties of the Mojave rattlesnake (Crotalus scutulatus scutulatus) are associated with the presence of the Mojave toxin A subunit suggesting the existence of a genetic basis for rattlesnake venom composition. In this report, we hypothesized the existence of a genetic basis for intraspecies variation in metalloproteinase- associated biochemical properties of rattlesnake venom of the Mojave rattlesnake. To address this question, we PCR-amplified and compared the genomic DNA nucleotide sequences that code for the mature metalloproteinase domain of fourteen Mojave rattlesnakes captured from different geographical locations across the southwest region of the United States. -
Standard Common and Current Scientific Names for North American Amphibians, Turtles, Reptiles & Crocodilians
STANDARD COMMON AND CURRENT SCIENTIFIC NAMES FOR NORTH AMERICAN AMPHIBIANS, TURTLES, REPTILES & CROCODILIANS Sixth Edition Joseph T. Collins TraVis W. TAGGart The Center for North American Herpetology THE CEN T ER FOR NOR T H AMERI ca N HERPE T OLOGY www.cnah.org Joseph T. Collins, Director The Center for North American Herpetology 1502 Medinah Circle Lawrence, Kansas 66047 (785) 393-4757 Single copies of this publication are available gratis from The Center for North American Herpetology, 1502 Medinah Circle, Lawrence, Kansas 66047 USA; within the United States and Canada, please send a self-addressed 7x10-inch manila envelope with sufficient U.S. first class postage affixed for four ounces. Individuals outside the United States and Canada should contact CNAH via email before requesting a copy. A list of previous editions of this title is printed on the inside back cover. THE CEN T ER FOR NOR T H AMERI ca N HERPE T OLOGY BO A RD OF DIRE ct ORS Joseph T. Collins Suzanne L. Collins Kansas Biological Survey The Center for The University of Kansas North American Herpetology 2021 Constant Avenue 1502 Medinah Circle Lawrence, Kansas 66047 Lawrence, Kansas 66047 Kelly J. Irwin James L. Knight Arkansas Game & Fish South Carolina Commission State Museum 915 East Sevier Street P. O. Box 100107 Benton, Arkansas 72015 Columbia, South Carolina 29202 Walter E. Meshaka, Jr. Robert Powell Section of Zoology Department of Biology State Museum of Pennsylvania Avila University 300 North Street 11901 Wornall Road Harrisburg, Pennsylvania 17120 Kansas City, Missouri 64145 Travis W. Taggart Sternberg Museum of Natural History Fort Hays State University 3000 Sternberg Drive Hays, Kansas 67601 Front cover images of an Eastern Collared Lizard (Crotaphytus collaris) and Cajun Chorus Frog (Pseudacris fouquettei) by Suzanne L. -
(12) Patent Application Publication (10) Pub. No.: US 2004/0081648A1 Afeyan Et Al
US 2004.008 1648A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2004/0081648A1 Afeyan et al. (43) Pub. Date: Apr. 29, 2004 (54) ADZYMES AND USES THEREOF Publication Classification (76) Inventors: Noubar B. Afeyan, Lexington, MA (51) Int. Cl." ............................. A61K 38/48; C12N 9/64 (US); Frank D. Lee, Chestnut Hill, MA (52) U.S. Cl. ......................................... 424/94.63; 435/226 (US); Gordon G. Wong, Brookline, MA (US); Ruchira Das Gupta, Auburndale, MA (US); Brian Baynes, (57) ABSTRACT Somerville, MA (US) Disclosed is a family of novel protein constructs, useful as Correspondence Address: drugs and for other purposes, termed “adzymes, comprising ROPES & GRAY LLP an address moiety and a catalytic domain. In Some types of disclosed adzymes, the address binds with a binding site on ONE INTERNATIONAL PLACE or in functional proximity to a targeted biomolecule, e.g., an BOSTON, MA 02110-2624 (US) extracellular targeted biomolecule, and is disposed adjacent (21) Appl. No.: 10/650,592 the catalytic domain So that its affinity Serves to confer a new Specificity to the catalytic domain by increasing the effective (22) Filed: Aug. 27, 2003 local concentration of the target in the vicinity of the catalytic domain. The present invention also provides phar Related U.S. Application Data maceutical compositions comprising these adzymes, meth ods of making adzymes, DNA's encoding adzymes or parts (60) Provisional application No. 60/406,517, filed on Aug. thereof, and methods of using adzymes, Such as for treating 27, 2002. Provisional application No. 60/423,754, human Subjects Suffering from a disease, Such as a disease filed on Nov. -
Report of the Presence of Wild Animals
Report of the Presence of Wild Animals The information recorded here is essential to emergency services personnel so that they may protect themselves and your neighbors, provide for the safety of your animals, ensure the maximum protection and preservation of your property, and provide you with emergency services without unnecessary delay. Every person in New York State, who owns, possesses, or harbors a wild animal, as set forth in General Municipal Law §209-cc, must file this Report annually, on or before April 1, of each year, with the clerk of the city, village or town (if outside a village) where the animal is kept. A list of the common names of animals to be reported is enclosed with this form. Failure to file as required will subject you to penalties under law. A separate Report is required to be filed annually for each address where a wild animal is harbored. Exemptions: Pet dealers, as defined in section 752-a of the General Business Law, zoological facilities and other exhibitors licensed pursuant to U.S. Code Title 7 Chapter 54 Sections 2132, 2133 and 2134, and licensed veterinarians in temporary possession of dangerous dogs, are not required to file this report. Instructions for completing this form: 1. Please print or type all information, using blue or black ink. 2. Fill in the information requested on this page. 3. On the continuation sheets, fill in the information requested for each type of animal that you possess. 4. Return the completed forms to the city, town, or village clerk of each municipality where the animal or animals are owned, possessed or harbored. -
Arxiv:1212.4161V1 [Q-Bio.BM] 17 Dec 2012
Comparing proteins by their internal dynamics: exploring structure-function relationships beyond static structural alignments Cristian Micheletti Scuola Internazionale Superiore di Studi Avanzati, via Bonomea 265, Trieste, Italy; e-mail: [email protected] (Dated: October 30, 2018) The growing interest for comparing protein internal dynamics owes much to the realization that protein function can be accompanied or assisted by structural fluctuations and conformational changes. Analogously to the case of functional structural elements, those aspects of protein flexi- bility and dynamics that are functionally oriented should be subject to evolutionary conservation. Accordingly, dynamics-based protein comparisons or alignments could be used to detect protein relationships that are more elusive to sequence and structural alignments. Here we provide an ac- count of the progress that has been made in recent years towards developing and applying general methods for comparing proteins in terms of their internal dynamics and advance the understanding of the structure-function relationship. Link to published article in Physics of Live Reviews: http://dx.doi.org/10.1016/j.plrev.2012.10.009 PACS numbers: I. INTRODUCTION tend to conserve very precisely functional structural el- ements and the location of the active site where differ- Over the past decades enormous efforts have been ent amino acids can be recruited for different function[10, made to clarify the sequence ! structure ! function 28, 115, 123, 169]. More recently it has also emerged that relationships for proteins and enzymes. In particular specific features of protein internal dynamics that impact the sequence ! structure connection has been exten- biological activity and functionality can also be subject sively probed by dissecting the detailed physico-chemical to evolutionary conservation[21, 87, 137, 181, 182].