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Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M. -
Wasps and Bees in Southern Africa
SANBI Biodiversity Series 24 Wasps and bees in southern Africa by Sarah K. Gess and Friedrich W. Gess Department of Entomology, Albany Museum and Rhodes University, Grahamstown Pretoria 2014 SANBI Biodiversity Series The South African National Biodiversity Institute (SANBI) was established on 1 Sep- tember 2004 through the signing into force of the National Environmental Manage- ment: Biodiversity Act (NEMBA) No. 10 of 2004 by President Thabo Mbeki. The Act expands the mandate of the former National Botanical Institute to include respon- sibilities relating to the full diversity of South Africa’s fauna and flora, and builds on the internationally respected programmes in conservation, research, education and visitor services developed by the National Botanical Institute and its predecessors over the past century. The vision of SANBI: Biodiversity richness for all South Africans. SANBI’s mission is to champion the exploration, conservation, sustainable use, appreciation and enjoyment of South Africa’s exceptionally rich biodiversity for all people. SANBI Biodiversity Series publishes occasional reports on projects, technologies, workshops, symposia and other activities initiated by, or executed in partnership with SANBI. Technical editing: Alicia Grobler Design & layout: Sandra Turck Cover design: Sandra Turck How to cite this publication: GESS, S.K. & GESS, F.W. 2014. Wasps and bees in southern Africa. SANBI Biodi- versity Series 24. South African National Biodiversity Institute, Pretoria. ISBN: 978-1-919976-73-0 Manuscript submitted 2011 Copyright © 2014 by South African National Biodiversity Institute (SANBI) All rights reserved. No part of this book may be reproduced in any form without written per- mission of the copyright owners. The views and opinions expressed do not necessarily reflect those of SANBI. -
Molecular Phylogenetic Relationships Among Members of the Family Phytolaccaceae Sensu Lato Inferred from Internal Transcribed Sp
Molecular phylogenetic relationships among members of the family Phytolaccaceae sensu lato inferred from internal transcribed spacer sequences of nuclear ribosomal DNA J. Lee1, S.Y. Kim1, S.H. Park1 and M.A. Ali2 1International Biological Material Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon, South Korea 2Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia Corresponding author: M.A. Ali E-mail: [email protected] Genet. Mol. Res. 12 (4): 4515-4525 (2013) Received August 6, 2012 Accepted November 21, 2012 Published February 28, 2013 DOI http://dx.doi.org/10.4238/2013.February.28.15 ABSTRACT. The phylogeny of a phylogenetically poorly known family, Phytolaccaceae sensu lato (s.l.), was constructed for resolving conflicts concerning taxonomic delimitations. Cladistic analyses were made based on 44 sequences of the internal transcribed spacer of nuclear ribosomal DNA from 11 families (Aizoaceae, Basellaceae, Didiereaceae, Molluginaceae, Nyctaginaceae, Phytolaccaceae s.l., Polygonaceae, Portulacaceae, Sarcobataceae, Tamaricaceae, and Nepenthaceae) of the order Caryophyllales. The maximum parsimony tree from the analysis resolved a monophyletic group of the order Caryophyllales; however, the members, Agdestis, Anisomeria, Gallesia, Gisekia, Hilleria, Ledenbergia, Microtea, Monococcus, Petiveria, Phytolacca, Rivinia, Genetics and Molecular Research 12 (4): 4515-4525 (2013) ©FUNPEC-RP www.funpecrp.com.br J. Lee et al. 4516 Schindleria, Seguieria, Stegnosperma, and Trichostigma, which belong to the family Phytolaccaceae s.l., did not cluster under a single clade, demonstrating that Phytolaccaceae is polyphyletic. Key words: Phytolaccaceae; Phylogenetic relationships; Internal transcribed spacer; Nuclear ribosomal DNA INTRODUCTION The Caryophyllales (part of the core eudicots), sometimes also called Centrospermae, include about 6% of dicotyledonous species and comprise 33 families, 692 genera and approxi- mately 11200 species. -
From Cacti to Carnivores: Improved Phylotranscriptomic Sampling And
Article Type: Special Issue Article RESEARCH ARTICLE INVITED SPECIAL ARTICLE For the Special Issue: Using and Navigating the Plant Tree of Life Short Title: Walker et al.—Phylotranscriptomic analysis of Caryophyllales From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales Joseph F. Walker1,13, Ya Yang2, Tao Feng3, Alfonso Timoneda3, Jessica Mikenas4,5, Vera Hutchison4, Caroline Edwards4, Ning Wang1, Sonia Ahluwalia1, Julia Olivieri4,6, Nathanael Walker-Hale7, Lucas C. Majure8, Raúl Puente8, Gudrun Kadereit9,10, Maximilian Lauterbach9,10, Urs Eggli11, Hilda Flores-Olvera12, Helga Ochoterena12, Samuel F. Brockington3, Michael J. Moore,4 and Stephen A. Smith1,13 Manuscript received 13 October 2017; revision accepted 4 January 2018. 1 Department of Ecology & Evolutionary Biology, University of Michigan, 830 North University Avenue, Ann Arbor, MI 48109-1048 USA 2 Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St. Paul, MN 55108 USA 3 Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK 4 Department of Biology, Oberlin College, Science Center K111, 119 Woodland Street, Oberlin, OH 44074-1097 USA 5 Current address: USGS Canyonlands Research Station, Southwest Biological Science Center, 2290 S West Resource Blvd, Moab, UT 84532 USA 6 Institute of Computational and Mathematical Engineering (ICME), Stanford University, 475 Author Manuscript Via Ortega, Suite B060, Stanford, CA, 94305-4042 USA This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. -
Towards an Updated Checklist of the Libyan Flora
Phytotaxa 338 (1): 001–016 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2018 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.338.1.1 Towards an updated checklist of the Libyan flora AHMED M. H. GAWHARI1, 2, STEPHEN L. JURY 2 & ALASTAIR CULHAM 2 1 Botany Department, Cyrenaica Herbarium, Faculty of Sciences, University of Benghazi, Benghazi, Libya E-mail: [email protected] 2 University of Reading Herbarium, The Harborne Building, School of Biological Sciences, University of Reading, Whiteknights, Read- ing, RG6 6AS, U.K. E-mail: [email protected]. E-mail: [email protected]. Abstract The Libyan flora was last documented in a series of volumes published between 1976 and 1989. Since then there has been a substantial realignment of family and generic boundaries and the discovery of many new species. The lack of an update or revision since 1989 means that the Libyan Flora is now out of date and requires a reassessment using modern approaches. Here we report initial efforts to provide an updated checklist covering 43 families out of the 150 in the published flora of Libya, including 138 genera and 411 species. Updating the circumscription of taxa to follow current classification results in 11 families (Coridaceae, Guttiferae, Leonticaceae, Theligonaceae, Tiliaceae, Sterculiaceae, Bombacaeae, Sparganiaceae, Globulariaceae, Asclepiadaceae and Illecebraceae) being included in other generally broader and less morphologically well-defined families (APG-IV, 2016). As a consequence, six new families: Hypericaceae, Adoxaceae, Lophiocarpaceae, Limeaceae, Gisekiaceae and Cleomaceae are now included in the Libyan Flora. -
A Taxonomic Backbone for the Global Synthesis of Species Diversity in the Angiosperm Order Caryophyllales
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2015 A taxonomic backbone for the global synthesis of species diversity in the angiosperm order Caryophyllales Hernández-Ledesma, Patricia; Berendsohn, Walter G; Borsch, Thomas; Mering, Sabine Von; Akhani, Hossein; Arias, Salvador; Castañeda-Noa, Idelfonso; Eggli, Urs; Eriksson, Roger; Flores-Olvera, Hilda; Fuentes-Bazán, Susy; Kadereit, Gudrun; Klak, Cornelia; Korotkova, Nadja; Nyffeler, Reto; Ocampo, Gilberto; Ochoterena, Helga; Oxelman, Bengt; Rabeler, Richard K; Sanchez, Adriana; Schlumpberger, Boris O; Uotila, Pertti Abstract: The Caryophyllales constitute a major lineage of flowering plants with approximately 12500 species in 39 families. A taxonomic backbone at the genus level is provided that reflects the current state of knowledge and accepts 749 genera for the order. A detailed review of the literature of the past two decades shows that enormous progress has been made in understanding overall phylogenetic relationships in Caryophyllales. The process of re-circumscribing families in order to be monophyletic appears to be largely complete and has led to the recognition of eight new families (Anacampserotaceae, Kewaceae, Limeaceae, Lophiocarpaceae, Macarthuriaceae, Microteaceae, Montiaceae and Talinaceae), while the phylogenetic evaluation of generic concepts is still well underway. As a result of this, the number of genera has increased by more than ten percent in comparison to the last complete treatments in the Families and genera of vascular plants” series. A checklist with all currently accepted genus names in Caryophyllales, as well as nomenclatural references, type names and synonymy is presented. Notes indicate how extensively the respective genera have been studied in a phylogenetic context. -
2 ANGIOSPERM PHYLOGENY GROUP (APG) SYSTEM History Of
ANGIOSPERM PHYLOGENY GROUP (APG) SYSTEM The Angiosperm Phylogeny Group, or APG, refers to an informal international group of systematic botanists who came together to try to establish a consensus view of the taxonomy of flowering plants (angiosperms) that would reflect new knowledge about their relationships based upon phylogenetic studies. As of 2010, three incremental versions of a classification system have resulted from this collaboration (published in 1998, 2003 and 2009). An important motivation for the group was what they viewed as deficiencies in prior angiosperm classifications, which were not based on monophyletic groups (i.e. groups consisting of all the descendants of a common ancestor). APG publications are increasingly influential, with a number of major herbaria changing the arrangement of their collections to match the latest APG system. Angiosperm classification and the APG Until detailed genetic evidence became available, the classification of flowering plants (also known as angiosperms, Angiospermae, Anthophyta or Magnoliophyta) was based on their morphology (particularly that of the flower) and their biochemistry (what kinds of chemical compound they contained or produced). Classification systems were typically produced by an individual botanist or by a small group. The result was a large number of such systems (see List of systems of plant taxonomy). Different systems and their updates tended to be favoured in different countries; e.g. the Engler system in continental Europe; the Bentham & Hooker system in Britain (particularly influential because it was used by Kew); the Takhtajan system in the former Soviet Union and countries within its sphere of influence; and the Cronquist system in the United States. -
An Annotated Checklist of the Coastal Forests of Kenya, East Africa
A peer-reviewed open-access journal PhytoKeys 147: 1–191 (2020) Checklist of coastal forests of Kenya 1 doi: 10.3897/phytokeys.147.49602 CHECKLIST http://phytokeys.pensoft.net Launched to accelerate biodiversity research An annotated checklist of the coastal forests of Kenya, East Africa Veronicah Mutele Ngumbau1,2,3,4, Quentin Luke4, Mwadime Nyange4, Vincent Okelo Wanga1,2,3, Benjamin Muema Watuma1,2,3, Yuvenalis Morara Mbuni1,2,3,4, Jacinta Ndunge Munyao1,2,3, Millicent Akinyi Oulo1,2,3, Elijah Mbandi Mkala1,2,3, Solomon Kipkoech1,2,3, Malombe Itambo4, Guang-Wan Hu1,2, Qing-Feng Wang1,2 1 CAS Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Gar- den, Chinese Academy of Sciences, Wuhan 430074, Hubei, China 2 Sino-Africa Joint Research Center (SA- JOREC), Chinese Academy of Sciences, Wuhan 430074, Hubei, China 3 University of Chinese Academy of Sciences, Beijing 100049, China 4 East African Herbarium, National Museums of Kenya, P. O. Box 45166 00100, Nairobi, Kenya Corresponding author: Guang-Wan Hu ([email protected]) Academic editor: P. Herendeen | Received 23 December 2019 | Accepted 17 March 2020 | Published 12 May 2020 Citation: Ngumbau VM, Luke Q, Nyange M, Wanga VO, Watuma BM, Mbuni YuM, Munyao JN, Oulo MA, Mkala EM, Kipkoech S, Itambo M, Hu G-W, Wang Q-F (2020) An annotated checklist of the coastal forests of Kenya, East Africa. PhytoKeys 147: 1–191. https://doi.org/10.3897/phytokeys.147.49602 Abstract The inadequacy of information impedes society’s competence to find out the cause or degree of a prob- lem or even to avoid further losses in an ecosystem. -
DDC) Stemming from the Adoption of the APG (Angiosperm Phylogeny Group) III Classification As the Basis for the DDC’S Treatment of Flowering Plants
This PDF documents proposed changes throughout the Dewey Decimal Classification (DDC) stemming from the adoption of the APG (Angiosperm Phylogeny Group) III classification as the basis for the DDC’s treatment of flowering plants. We request comment from any interested party, to be sent to Rebecca Green ([email protected]) by 31 January 2016. Please include “Angiosperm review comments” in your subject line. -------------------------------------------------------------- Why is the DDC adopting a new basis for classifying angiosperms (flowering plants)? During the latter half of the 20th century, biological classification turned from establishing taxa predominantly on the basis of morphological similarities to establishing taxa predominantly on the basis of shared ancestry / shared derived characters, with biological taxonomies mirroring evolutionary relationships. Phylogenetic analysis typically underlies modern evolutionary classifications, but has resulted in the development of many competing classifications. Within the domain of flowering plants, different classification systems have been favored in different countries. The Angiosperm Phylogeny Group, a global consortium of botanists, has addressed this issue by developing a “consensus” classification that is monophyletic (i.e., its taxa include all but only the descendants of a common ancestor). Now in its third version, the APG III classification is considered relatively stable and useful for both research and practice (e.g., for organizing plants in herbaria). The development for flowering plants presented here is the culmination of DDC editorial work over a span of several years. An early version revised 583–584 to make the schedule compatible with the APG III classification, while trying to minimize relocations and using see references to establish the APG III logical hierarchy. -
Alphabetical List of Vascular Plant Families with Family Numbers
ALPHABETICAL LIST OF VASCULAR PLANT FAMILIES WITH FAMILY NUMBERS (slightly modified Englerian delineation and phylogentic sequence, EXCEPT @=modern/APGIII delineation) Abolbodaceae@ (029) 199R Berberidopsidaceae@* 033 Commelinaceae@ Empetraceae@ (233) 266 Acanthaceae@ 061 Betulaceae@ Compositae@ (280) Epacridaceae@ (233) Aceraceae@ (165) 129T Biebersteiniaceae@* 127 Connaraceae@ 007A Ephedraceae@ 204 Achariaceae@ 258 Bignoniaceae@ Convallariaceae (040F) P04 Equisetaceae@ 087A Achatocarpaceae@ 194 Bixaceae@ 249 Convolvulaceae@ Eremolepidaceae (069) 023Q Acoraceae@ 040U Blandfordiaceae@ Cordiaceae@ (252) 233 Ericaceae@ 180Q Actinidiaceae@ P39 Blechnaceae@ 151 Coriariaceae@ 030 Eriocaulaceae@ Adiantaceae (P31) Bombacaceae@ (175) 229 Cornaceae@ 072H Erythropalaceae@ 272 Adoxaceae@ 186Q Bonnetiaceae@ 038I Corsiaceae@* 134 Erythroxylaceae@ 199A Aextoxicaceae@* 252 Boraginaceae@ 156 Corynocarpaceae@ 117Q Escalloniaceae@ 040J Agapanthaceae Borthwickiaceae (108) 046R Costaceae@ 090C Eucommiaceae@ 040A Agavaceae 040V Boryaceae@* 072G Coulaceae@ Eucryphiaceae@ (120) Agdestidaceae@ (083) 105 Brassicaceae@ 115 Crassulaceae@ 147 Euphorbiaceae@ 084 Aizoaceae@ Bretschneideraceae@* (131A) 125 Crossosomataceae@ 126P Euphroniaceae@ 131A Akaniaceae@* 032 Bromeliaceae@ Cruciferae@ (105) 098A Eupomatiaceae@ Alangiaceae@ (229) 119 Brunelliaceae@ 217A Crypteroniaceae@ 090B Eupteleaceae@ 015 Alismataceae@ 122 Bruniaceae@ 132Q Ctenolophonaceae@* 128 Fabaceae@ 040I Alliaceae Buddlejaceae@ (257) 275 Cucurbitaceae@ 062 Fagaceae@ 262A Alseuosmiaceae@* 049 Burmanniaceae@ -
Phylogeny and Systematics of Kewa (Kewaceae) Authors: Mats Thulin, Anders Larsson, Erika J
Phylogeny and Systematics of Kewa (Kewaceae) Authors: Mats Thulin, Anders Larsson, Erika J. Edwards, and Abigail J. Moore Source: Systematic Botany, 43(3) : 689-700 Published By: American Society of Plant Taxonomists URL: https://doi.org/10.1600/036364418X697409 BioOne Complete (complete.BioOne.org) is a full-text database of 200 subscribed and open-access titles in the biological, ecological, and environmental sciences published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Complete website, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/terms-of-use. Usage of BioOne Complete content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. Downloaded From: https://bioone.org/journals/Systematic-Botany on 2/8/2019 Terms of Use: https://bioone.org/terms-of-use Access provided by Yale University Systematic Botany (2018), 43(3): pp. 689–700 © Copyright 2018 by the American Society of Plant Taxonomists DOI 10.1600/036364418X697409 Date of publication August 10, 2018 Phylogeny and Systematics of Kewa (Kewaceae) Mats Thulin,1,6 Anders Larsson,2 Erika J. Edwards,3,4 and Abigail J. Moore3,5 1Systematic Biology, Department of Organismal Biology, EBC, Uppsala University, Norbyv¨agen 18D, 752 36 Uppsala, Sweden; [email protected] 2NBIS, SciLifeLab, Uppsala University, Box 596, 751 24 Uppsala, Sweden; [email protected] 3Department of Ecology and Evolutionary Biology, Brown University, 80 Waterman Street, Box G-W, Providence, Rhode Island 02912, USA 4Department of Ecology and Evolutionary Biology, Yale University, P.O.