Chemical Evolution in the Order Peltigerales: Triterpenoids
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The Puzzle of Lichen Symbiosis
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1503 The puzzle of lichen symbiosis Pieces from Thamnolia IOANA ONUT, -BRÄNNSTRÖM ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 ISBN 978-91-554-9887-0 UPPSALA urn:nbn:se:uu:diva-319639 2017 Dissertation presented at Uppsala University to be publicly examined in Lindhalsalen, EBC, Norbyvägen 14, Uppsala, Thursday, 1 June 2017 at 09:15 for the degree of Doctor of Philosophy. The examination will be conducted in English. Faculty examiner: Associate Professor Anne Pringle (University of Wisconsin-Madison, Department of Botany). Abstract Onuț-Brännström, I. 2017. The puzzle of lichen symbiosis. Pieces from Thamnolia. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 1503. 62 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-554-9887-0. Symbiosis brought important evolutionary novelties to life on Earth. Lichens, the symbiotic entities formed by fungi, photosynthetic organisms and bacteria, represent an example of a successful adaptation in surviving hostile environments. Yet many aspects of the lichen symbiosis remain unexplored. This thesis aims at bringing insights into lichen biology and the importance of symbiosis in adaptation. I am using as model system a successful colonizer of tundra and alpine environments, the worm lichens Thamnolia, which seem to only reproduce vegetatively through symbiotic propagules. When the genetic architecture of the mating locus of the symbiotic fungal partner was analyzed with genomic and transcriptomic data, a sexual self-incompatible life style was revealed. However, a screen of the mating types ratios across natural populations detected only one of the mating types, suggesting that Thamnolia has no potential for sexual reproduction because of lack of mating partners. -
Cuivre Bryophytes
Trip Report for: Cuivre River State Park Species Count: 335 Date: Multiple Visits Lincoln County Agency: MODNR Location: Lincoln Hills - Bryophytes Participants: Bryophytes from Natural Resource Inventory Database Bryophyte List from NRIDS and Bruce Schuette Species Name (Synonym) Common Name Family COFC COFW Acarospora unknown Identified only to Genus Acarosporaceae Lichen Acrocordia megalospora a lichen Monoblastiaceae Lichen Amandinea dakotensis a button lichen (crustose) Physiaceae Lichen Amandinea polyspora a button lichen (crustose) Physiaceae Lichen Amandinea punctata a lichen Physiaceae Lichen Amanita citrina Citron Amanita Amanitaceae Fungi Amanita fulva Tawny Gresette Amanitaceae Fungi Amanita vaginata Grisette Amanitaceae Fungi Amblystegium varium common willow moss Amblystegiaceae Moss Anisomeridium biforme a lichen Monoblastiaceae Lichen Anisomeridium polypori a crustose lichen Monoblastiaceae Lichen Anomodon attenuatus common tree apron moss Anomodontaceae Moss Anomodon minor tree apron moss Anomodontaceae Moss Anomodon rostratus velvet tree apron moss Anomodontaceae Moss Armillaria tabescens Ringless Honey Mushroom Tricholomataceae Fungi Arthonia caesia a lichen Arthoniaceae Lichen Arthonia punctiformis a lichen Arthoniaceae Lichen Arthonia rubella a lichen Arthoniaceae Lichen Arthothelium spectabile a lichen Uncertain Lichen Arthothelium taediosum a lichen Uncertain Lichen Aspicilia caesiocinerea a lichen Hymeneliaceae Lichen Aspicilia cinerea a lichen Hymeneliaceae Lichen Aspicilia contorta a lichen Hymeneliaceae Lichen -
Conservation Assessment for Sticta Fuliginosa (Hoffm.) Ach
Conservation Assessment for Sticta fuliginosa (Hoffm.) Ach. Photo: Stephen Sharnoff USDA FOREST SERVICE, EASTERN REGION November 2002 Prepared by Clifford Wetmore Dept. of Plant Biology University of Minnesota 1445 Gortner Ave. St. Paul, MN 55108 [email protected] This Conservation Assessment was prepared to compile the published and unpublished information on the subject taxon or community; or this document was prepared by another organization and provides information to serve as a Conservation Assessment for the Eastern Region of the Forest Service. It does not represent a management decision by the U.S. Forest Service. Though the best scientific information available was used and subject experts were consulted in preparation of this document, it is expected that new information will arise. In the spirit of continuous learning and adaptive management, if you have information that will assist in conserving the subject taxon, please contact the Eastern Region of the Forest Service - Threatened and Endangered Species Program at 310 Wisconsin Avenue, Suite 580 Milwaukee, Wisconsin 53203. Conservation Assessment forSticta fuliginosa (Hoffm.) Ach. 2 Table Of Contents EXECUTIVE SUMMARY ...................................................................................... 4 ACKNOWLEDGEMENTS ..................................................................................... 4 INTRODUCTION..................................................................................................... 4 NOMENCLATURE AND TAXONOMY.............................................................. -
Insights Into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont
Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Katja Fedrowitz Faculty of Natural Resources and Agricultural Sciences Department of Ecology Uppsala Doctoral Thesis Swedish University of Agricultural Sciences Uppsala 2011 Acta Universitatis agriculturae Sueciae 2011:96 Cover: Lobaria pulmonaria, Nephroma bellum, and fallen bark in an old-growth forest in Finland with Populus tremula. Part of the tRNALeu (UAA) sequence in an alignment. (photos: K. Fedrowitz) ISSN 1652-6880 ISBN 978-91-576-7640-5 © 2011 Katja Fedrowitz, Uppsala Print: SLU Service/Repro, Uppsala 2011 Insights into the Ecology and Genetics of Lichens with a Cyanobacterial Photobiont Abstract Nature conservation requires an in-depth understanding of the ecological processes that influence species persistence in the different phases of a species life. In lichens, these phases comprise dispersal, establishment, and growth. This thesis aimed at increasing the knowledge on epiphytic cyanolichens by studying different aspects linked to these life stages, including species colonization extinction dynamics, survival and vitality of lichen transplants, and the genetic symbiont diversity in the genus Nephroma. Paper I reveals that local colonizations, stochastic, and deterministic extinctions occur in several epiphytic macrolichens. Species habitat-tracking metapopulation dynamics could partly be explained by habitat quality and size, spatial connectivity, and possibly facilitation by photobiont sharing. Simulations of species future persistence suggest stand-level extinction risk for some infrequent sexually dispersed species, especially when assuming low tree numbers and observed tree fall rates. Forestry practices influence the natural occurrence of species, and retention of trees at logging is one measure to maintain biodiversity. However, their long-term benefit for biodiversity is still discussed. -
Ecogeografía Del Género Sticta (Ascomycota Liquenizados: Lobariaceae) En Colombia
Ecogeografía del género Sticta (Ascomycota liquenizados: Lobariaceae) en Colombia Bibiana Moncada1, Jaime Aguirre2 & Robert Lücking3 1. Licenciatura en Biología, Universidad Distrital Francisco José de Caldas, Cra. 4 No. 26D-54, Torre de Laboratorios, Herbario, Bogotá, Colombia; [email protected], [email protected] 2. Universidad Nacional de Colombia, Instituto de Ciencias Naturales, Carrera 45 No 26-85; [email protected] 3. Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A.; [email protected] Recibido 19-IX-2012. Corregido 10-IX-2013. Aceptado 16-X-2013. Abstract: Ecogeography of the genus Sticta (lichenized Ascomycota: Lobariaceae) in Colombia. Colombia is a megadiverse country, but with a substantial gap in the taxonomic and ecological knowledge of fungi and lichens. Thus, the objective of the present study was an ecogeographical analysis of the Sticta species in Colombia. The data included macrodistribution (with respect to mountain ranges and life zones) and microhabi- tat preferences (light, substrate) and were obtained from field work and herbarium collection labels (completed by comparison with modern geographic and vegetation maps), for 103 species of Sticta currently recognized in Colombia (plus seven additional biotypes with different photobionts or reproductive mode). Using non-metric multidimensional scaling (NMS), correlations between ecogeographical variables and species were established, and ecotypes were delimited. Colombian species of Sticta showed distinct distribution patterns relative to altitude, mountain ranges, life zones, as well as light exposure and substrate, forming several distinct groups. Cyanobacterial species tend to have wider distribution ranges than green algal species. We concluded that the orogeny of the Northern Andes substantially affected speciation of the genus Sticta and its ecogeographical dif- ferentiation. -
Pannariaceae Generic Taxonomy LL Ver. 27.9.2013.Docx
http://www.diva-portal.org Preprint This is the submitted version of a paper published in The Lichenologist. Citation for the original published paper (version of record): Ekman, S. (2014) Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota). The Lichenologist, 46: 627-656 http://dx.doi.org/10.1017/S002428291400019X Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:nrm:diva-943 Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota) Stefan EKMAN, Mats WEDIN, Louise LINDBLOM & Per M. JØRGENSEN S. Ekman (corresponding author): Museum of Evolution, Uppsala University, Norbyvägen 16, SE –75236 Uppsala, Sweden. Email: [email protected] M. Wedin: Dept. of Botany, Swedish Museum of Natural History, Box 50007, SE –10405 Stockholm, Sweden. L. Lindblom and P. M. Jørgensen: Dept. of Natural History, University Museum of Bergen, Box 7800, NO –5020 Bergen, Norway. Abstract: We estimated phylogeny in the lichen-forming ascomycete family Pannariaceae. We specifically modelled spatial (across-site) heterogeneity in nucleotide frequencies, as models not incorporating this heterogeneity were found to be inadequate for our data. Model adequacy was measured here as the ability of the model to reconstruct nucleotide diversity per site in the original sequence data. A potential non-orthologue in the internal transcribed spacer region (ITS) of Degelia plumbea was observed. We propose a revised generic classification for the Pannariaceae, accepting 30 genera, based on our phylogeny, previously published phylogenies, as well as morphological and chemical data available. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
Clementeana 13. 2011
CLEMENTEANA Boletín de la SOCIEDAD ESPAÑOLA DE LIQUENOLOGÍA (SEL) Ramalina clementeana nº 13. Barcelona, octubre 2011 Editor: N.L. Hladun Dept. Biología Vegetal (Botánica) Universidad de Barcelona Diagonal 643 08028 Barcelona, España tel: +34-3-403 98 65; fax: +34-3-411 28 42 Email: [email protected] Publicaciones de la Sociedad Española de Líquenologia Clementeana es el boletín oficial de la Sociedad Española de Liquenología (SEL). Se publica, un número Flora Liquenológica Ibérica por año, en castellano, con colaboraciones seleccionadas en inglés, francés o alemán. Las colaboraciones se deben hacer llegar al editor antes del 30 de noviembre, para que pueda ser publicado en el mes de enero. Se Vol 1: Peltigerales: Lobariaceae, Nephromataceae, Peltigeraceae. 2003. (BURGAZ, ruega que los escritos sean remitidos en soporte magnético de 3.5" en procesador de Word. A.R. & MARTÍNEZ). Vol 2: Ostropales: Graphidaceae ( CARBALLAL, R. & LÓPEZ DE SILANES, La SEL está abierta a todas aquellas personas interesadas en el estudio de los líquenes. La cuota es de 30 € año para los socios de número y de 15 € para los socios estudiantes, si el pago se realiza por domiciliación M.E:), Solorinellaceae (LÓPEZ DE SILANES, M.E:),; Gyalectales: Gyalectaceae. bancaria o en su defecto por transferencia, a la cc 2100-0555-35-0200632868 de la Caixa de Pensions, (PAZ-BERMÚDEZ, G.; LÓPEZ DE SILANES, M.E:; ÁLVAREZ, J.), 2004. oficina Central-Diagonal (Barcelona). Si se efectua mediante talón nominativo, a favor de la Sociedad Vol 3. Lecanorales: Bacidiaceae I. 2007. (LLOP, E.) Española de Liquenología, el importe será de 33 ó 18 debido a los gastos bancarios. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
The Macroevolutionary Dynamics of Symbiotic and Phenotypic Diversification in Lichens
The macroevolutionary dynamics of symbiotic and phenotypic diversification in lichens Matthew P. Nelsena,1, Robert Lückingb, C. Kevin Boycec, H. Thorsten Lumbscha, and Richard H. Reea aDepartment of Science and Education, Negaunee Integrative Research Center, The Field Museum, Chicago, IL 60605; bBotanischer Garten und Botanisches Museum, Freie Universität Berlin, 14195 Berlin, Germany; and cDepartment of Geological Sciences, Stanford University, Stanford, CA 94305 Edited by Joan E. Strassmann, Washington University in St. Louis, St. Louis, MO, and approved July 14, 2020 (received for review February 6, 2020) Symbioses are evolutionarily pervasive and play fundamental roles macroevolutionary consequences of ant–plant interactions (15–19). in structuring ecosystems, yet our understanding of their macroevo- However, insufficient attention has been paid to one of the most lutionary origins, persistence, and consequences is incomplete. We iconic examples of symbiosis (20, 21): Lichens. traced the macroevolutionary history of symbiotic and phenotypic Lichens are stable associations between a mycobiont (fungus) diversification in an iconic symbiosis, lichens. By inferring the most and photobiont (eukaryotic alga or cyanobacterium). The pho- comprehensive time-scaled phylogeny of lichen-forming fungi (LFF) tobiont supplies the heterotrophic fungus with photosynthetically to date (over 3,300 species), we identified shifts among symbiont derived carbohydrates, while the mycobiont provides the pho- classes that broadly coincided with the convergent -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
One Hundred New Species of Lichenized Fungi: a Signature of Undiscovered Global Diversity
Phytotaxa 18: 1–127 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Monograph PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) PHYTOTAXA 18 One hundred new species of lichenized fungi: a signature of undiscovered global diversity H. THORSTEN LUMBSCH1*, TEUVO AHTI2, SUSANNE ALTERMANN3, GUILLERMO AMO DE PAZ4, ANDRÉ APTROOT5, ULF ARUP6, ALEJANDRINA BÁRCENAS PEÑA7, PAULINA A. BAWINGAN8, MICHEL N. BENATTI9, LUISA BETANCOURT10, CURTIS R. BJÖRK11, KANSRI BOONPRAGOB12, MAARTEN BRAND13, FRANK BUNGARTZ14, MARCELA E. S. CÁCERES15, MEHTMET CANDAN16, JOSÉ LUIS CHAVES17, PHILIPPE CLERC18, RALPH COMMON19, BRIAN J. COPPINS20, ANA CRESPO4, MANUELA DAL-FORNO21, PRADEEP K. DIVAKAR4, MELIZAR V. DUYA22, JOHN A. ELIX23, ARVE ELVEBAKK24, JOHNATHON D. FANKHAUSER25, EDIT FARKAS26, LIDIA ITATÍ FERRARO27, EBERHARD FISCHER28, DAVID J. GALLOWAY29, ESTER GAYA30, MIREIA GIRALT31, TREVOR GOWARD32, MARTIN GRUBE33, JOSEF HAFELLNER33, JESÚS E. HERNÁNDEZ M.34, MARÍA DE LOS ANGELES HERRERA CAMPOS7, KLAUS KALB35, INGVAR KÄRNEFELT6, GINTARAS KANTVILAS36, DOROTHEE KILLMANN28, PAUL KIRIKA37, KERRY KNUDSEN38, HARALD KOMPOSCH39, SERGEY KONDRATYUK40, JAMES D. LAWREY21, ARMIN MANGOLD41, MARCELO P. MARCELLI9, BRUCE MCCUNE42, MARIA INES MESSUTI43, ANDREA MICHLIG27, RICARDO MIRANDA GONZÁLEZ7, BIBIANA MONCADA10, ALIFERETI NAIKATINI44, MATTHEW P. NELSEN1, 45, DAG O. ØVSTEDAL46, ZDENEK PALICE47, KHWANRUAN PAPONG48, SITTIPORN PARNMEN12, SERGIO PÉREZ-ORTEGA4, CHRISTIAN PRINTZEN49, VÍCTOR J. RICO4, EIMY RIVAS PLATA1, 50, JAVIER ROBAYO51, DANIA ROSABAL52, ULRIKE RUPRECHT53, NORIS SALAZAR ALLEN54, LEOPOLDO SANCHO4, LUCIANA SANTOS DE JESUS15, TAMIRES SANTOS VIEIRA15, MATTHIAS SCHULTZ55, MARK R. D. SEAWARD56, EMMANUËL SÉRUSIAUX57, IMKE SCHMITT58, HARRIE J. M. SIPMAN59, MOHAMMAD SOHRABI 2, 60, ULRIK SØCHTING61, MAJBRIT ZEUTHEN SØGAARD61, LAURENS B. SPARRIUS62, ADRIANO SPIELMANN63, TOBY SPRIBILLE33, JUTARAT SUTJARITTURAKAN64, ACHRA THAMMATHAWORN65, ARNE THELL6, GÖRAN THOR66, HOLGER THÜS67, EINAR TIMDAL68, CAMILLE TRUONG18, ROMAN TÜRK69, LOENGRIN UMAÑA TENORIO17, DALIP K.