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Afifa Irani Thesis for ETD.Pdf INVESTIGATION OF THE COMMON MELAS MUTATION IN THE NORTHWESTERN PENNSYLVANIA AMISH COMMUNITY: MUTATION FREQUENCY AND EFFECTIVENESS OF AN EDUCATIONAL INTERVENTION by Afifa Elizabeth Irani B.S. in Genetics, Purdue University, 2012 Submitted to the Graduate Faculty of the Department of Human Genetics Graduate School of Public Health in partial fulfillment of the requirements for the degrees of Master of Public Health and Master of Science University of Pittsburgh 2015 UNIVERSITY OF PITTSBURGH Graduate School of Public Health This thesis was presented by Afifa Elizabeth Irani It was defended on April 14, 2015 and approved by Thesis Advisor: Catherine M. Walsh Vockley, M.S., LCGC Senior Genetic Counselor, Division of Medical Genetics, Children’s Hospital of Pittsburgh of UPMC Adjunct Instructor, Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh Committee Member: Gerard Vockley, M.D., Ph.D. Professor of Pediatrics, School of Medicine and Professor of Human Genetics, Graduate School of Public Health, University of Pittsburgh Chief of Division of Medical Genetics, Children’s Hospital of Pittsburgh of UPMC Committee Member: Candace Kammerer, Ph.D. Associate Professor, Human Genetics, Graduate School of Public Health, University of Pittsburgh Committee Member: John Shaffer, Ph.D. Assistant Professor, Human Genetics, Graduate School of Public Health, University of Pittsburgh ii Copyright © by Afifa Elizabeth Irani 2015 iii Catherine M. Walsh Vockley, M.S., LCGC INVESTIGATION OF THE COMMON MELAS MUTATION IN THE NORTHWESTERN PENNSYLVANIA AMISH COMMUNITY: MUTATION FREQUENCY AND EFFECTIVENESS OF AN EDUCATIONAL INTERVENTION Afifa Elizabeth Irani, M.S, M.P.H University of Pittsburgh, 2015 ABSTRACT Although mitochondrial respiratory chain deficiencies (often called “mitochondrial disease”) affect an estimated 1 in 5,000 individuals world-wide, prior to the recent diagnosis of this study’s index patient, mitochondrial DNA (mtDNA) mutations were not previously reported in Amish communities. The index patient from the Northwestern Pennsylvania Amish community was diagnosed with MELAS (Mitochondrial Encephalomyopathy, Lactic Acidosis, Stroke-like Episodes), the most common maternally-inherited mitochondrial disorder, and carries the common MELAS mutation, m.3243A>G in the MT-TL1 gene. Subsequently, two additional Amish families with different mitochondrial mutations were identified. These findings prompted a study with three aims: characterizing the incidence and clinical features of this MELAS mutation in this community, constructing a detailed pedigree of the Amish community, and assessing by pre- and post-intervention questionnaires the efficacy of an educational intervention designed to increase understanding of MELAS and mitochondrial disease. A study visit to the community was attended by the index patient’s extended family. During this visit, an educational intervention was presented, and questionnaires were administered. Interviews were conducted to gather family history information, including family structure and the presence of mitochondrial disease symptoms in family members. Samples were collected from 13 adults and two children for genetic testing. Samples were analyzed using high-resolution melt profiling for targeted assessment of the m.3243A>G mutation. While data analysis of iv questionnaires demonstrated limited increased understanding of educational intervention material, anecdotal experiences support increased understanding. Genetic testing revealed the mutation of interest in 13 participants, with tissue-specific variations in the levels of heteroplasmy. At a follow- up visit, test results and their implications were disclosed and discussed through genetic counseling. This study’s findings suggest maternally-inherited mitochondrial disease may be under- recognized given the lack of previous diagnosis in 13 participants reported here. The public health significance demonstrated through this is the potential for similarly unrecognized mitochondrial disease in the larger Amish community and in the general population due to the challenges related to diagnosis. Results of efficacy analysis of an educational intervention in this community can also inform the development of educational interventions for the general population and for health care providers about mitochondrial and other rare genetic disease. v TABLE OF CONTENTS ACKNOWLEDGEMENTS .................................................................................................... XIV 1.0 INTRODUCTION................................................................................................................ 1 2.0 HYPOTHESES AND SPECIFIC AIMS ............................................................................ 3 2.1 HYPOTHESES ............................................................................................................. 3 2.2 SPECIFIC AIMS .......................................................................................................... 3 3.0 BACKGROUND .................................................................................................................. 4 3.1 MITOCHONDRIA ....................................................................................................... 4 3.1.1 Mitochondrial Energy Production ................................................................. 4 3.1.2 Mitochondrial Genetics ................................................................................... 5 3.1.3 Mitochondrial Disease ..................................................................................... 7 3.2 MITOCHONDRIAL ENCEPHALOMYOPATHY, LACTIC ACIDOSIS, AND STROKE-LIKE EPISODES – MELAS ..................................................................... 8 3.2.1 Molecular Basis ................................................................................................ 9 3.2.2 Clinical Manifestations.................................................................................. 10 3.2.3 Diagnosis ......................................................................................................... 11 3.2.3.1 Sample Specifications ......................................................................... 11 3.2.4 Management & Treatment ........................................................................... 12 3.3 THE AMISH ............................................................................................................... 14 3.3.1 Amish Culture ................................................................................................ 14 3.3.2 Amish Medical Beliefs ................................................................................... 16 3.3.3 The Amish and Genetics ............................................................................... 16 vi 3.4 SELF-ADMINISTERED QUESTIONNAIRES AS A MEASURING TOOL ..... 17 3.4.1 Use of Questionnaires in Amish Communities............................................ 18 3.4.2 Skip Patterns .................................................................................................. 19 3.5 HIGH-RESOLUTION MELT PROFILING ........................................................... 20 3.5.1 High-Resolution Melt Profiling in mtDNA ................................................. 20 4.0 SIGNIFICANCE ................................................................................................................ 22 4.1 PUBLIC HEALTH AND MITOCHONDRIAL DISEASE .................................... 22 4.2 THE IMPACT OF MELAS....................................................................................... 24 4.3 AMISH HEALTH CARE .......................................................................................... 25 5.0 MATERIALS AND METHODS ...................................................................................... 27 5.1 RECRUITMENT PROCEDURES ........................................................................... 27 5.2 STUDY VISIT ONE ................................................................................................... 28 5.2.1 Pre-Education Questionnaires...................................................................... 28 5.2.1.1 Questionnaire Construction ............................................................... 29 5.2.2 Informed Consent .......................................................................................... 30 5.2.3 Educational Intervention .............................................................................. 31 5.2.3.1 The Presentation ................................................................................. 32 5.2.4 Post-Education Questionnaires .................................................................... 33 5.2.5 One-on-One Interview Sessions .................................................................... 33 5.2.6 Sample Collection .......................................................................................... 34 5.3 SAMPLE ANALYSIS ................................................................................................ 35 5.3.1 High-Resolution Melt Profiling Method ...................................................... 36 5.4 PEDIGREE CONSTRUCTION ............................................................................... 36 vii 5.5 QUESTIONNAIRE DATA ANALYSIS .................................................................. 37 5.6 STUDY VISIT TWO .................................................................................................. 37 5.6.1 Results Disclosure
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