Bulletin of the Natural History Museum (Formerly: Bulletin of the British Museum

Total Page:16

File Type:pdf, Size:1020Kb

Bulletin of the Natural History Museum (Formerly: Bulletin of the British Museum "STORY MUSEUf Bulletin of 26 NOV 1997 The Natural Histor Museum Botany Series THE NATURAL HISTORY MUSEUM VOLUME 27 NUMBER 2 27 NOVEMBER 1 997 The Bulletin of The Natural History Museum (formerly: Bulletin of the British Museum (Natural History) ), instituted in 1949, is issued in four scientific series, Botany, Entomology, Geology (incorporating Mineralogy) and Zoology. The Botany Series is edited in the Museum's Department of Botany Keeper of Botany: Dr S. Blackmore Editor of Bulletin: Ms M.J. Short Papers in the Bulletin are primarily the results of research carried out on the unique and ever- growing collections of the Museum, both by the scientific staff and by specialists from elsewhere who make use of the Museum's resources. Many of the papers are works of reference that will remain indispensable for years to come. All papers submitted for publication are subjected to external peer review for acceptance. A volume contains about 160 pages, made up by two numbers, published in the Spring and Autumn. Subscriptions may be placed for one or more of the series on an annual basis. Individual numbers and back numbers can be purchased and a Bulletin catalogue, by series, is available. Orders and enquiries should be sent to: Intercept Ltd. P.O. Box 7 16 Andover Hampshire SP10 1YG Telephone: (01264) 334748 Fax: (01264) 334058 Claims for non-receipt of issues of the Bulletin will be met free of charge if received by the Publisher within 6 months for the UK, and 9 months for the rest of the world. World List abbreviation: Bull. nat. Hist. Mus. Lond. (Bot.) The Natural History Museum, 1997 Botany Series ISSN 0968-0446 Vol. 27, No. 2, pp. 77-147 The Natural History Museum Cromwell Road London SW7 5BD Issued 27 November 1997 Typeset by Ann Buchan (Typesetters), Middlesex Printed in Great Britain by Henry Ling Ltd., at the Dorset Press, Dorchester, Dorset Bull. not. Hist. Mus. Loncl. (Bot.) 27(2): 77-147 Issued 27 November 1997 Systematics of Pogostemon (Labiatae) 78 G.R. BHATTI AND M. INGROUILLE included three D. D. maintained as operational taxonomic units as a first step in a revision Dysophylla species: auricularia, myosuroides and D. Benth. In the same work Bentham of the infrageneric classification. Benth., strigosa (1832- divided the into two the Non-patchouli species of Pogostemon sensu stricto are more 1836) genus Pogostemon sections, basis of the of inflores- diverse and better delineated. For example there is P. litigiosus Doan Paniculatae and the Racemosae on the type with a two-lipped calyx. Species are generally narrowly endemic to cence. was taken areas such as Sri Lanka or southern India, the eastern Himalayas, Bentham's splitting of Dysophylla and Pogostemon Yunnan, Java, Borneo or southern Africa. further, first by Rafinesque-Schmaltz (1847) and later by Briquet raised Dysophylla includes all the small flowered species which tend to (1897). Rafinesque-Schmaltz (1847) effectively Dysophylla have flowers crowded into dense verticillasters. Many species have section Verticillatae to generic rank by publishing a new genus and M. a weak stem, probably because they are aquatic or marshland Eusteralis Raf, which included Mentha pumila Graham subdivided and inhabitants. The calyx is small, translucent, and infundibular with a verticillata Roxb. Briquet (1897) Dysophylla follows: wide diameter. Most species have verticillate, linear to linear- Pogostemon into sections and subsections, as lanceolate leaves. However, there are a number of species which Genus Dysophylla combine the character states of Pogostemon sensu stricto and Sect. l.Rhabdocalicinae Briq. (Calyx tube cylindrical and rounded Dysophylla, so that the boundary between these taxa has not always or very indistinct, pentagonal) been stable, with different workers putting the same species into one 1. Oppositifoliae Benth. or other group or not recognising the groups at all. This is described A. Perennial species in greater detail below. B. Annual species The study reported here is a re-examination of the variation of 2. Verticillatae Benth. Pogostemon sensu lato leading to the erection of a new infrageneric Sect. II. Goniocalicinae Briq. (Calyx tube prominently five- classification which is more natural and which may be used as the angled) basis for future studies at lower taxonomic rank. A cladistic and Genus Pogostemon phenetic analysis of characters has aided the resolution of new 1. Section Racemosa Benth. infrageneric taxa but this has not been used directly because certain A. Glabriuscula Briq. (Naked filaments) characters, thought to be more constant and reliable, have been B. Barbata Briq. (Hairy filaments) weighted as more important in the classification, but all characters 2. Section Paniculata Benth. were weighted equally in the cladistic and phenetic analysis. The A. Interrupted verticils cladistic and phenetic analysis will be reported elsewhere. B. Continuous verticils History of the classification of Pogostemon Kudo (1927) treated Dysophylla and Pogostemon as distinct genera under subtribe Pogostemoninae. He divided Dysophylla into Pogostemon was described by Desfontaines (1815) as a distinct two sections: genus of Labiatae because of its hairy stamens: pogon is Greek for - beard and pogonostemon means 'with bearded stamen' (Steam, Section Eudysophylla stem indumentum tomentose to hirsute and 1992). The type species for the genus is P. plectranthoides Desf. leaves opposite, broad, ovate-lanceolate, margin serrulate (in- Desfontaines placed his new genus near Hyssopus L. Dysophylla cludes only D. auricularia). Blume was described as a distinct genus, related to Pogostemon by - Section Chotekia stem glabrous to pubescent and leaves verticil- having bearded stamens (Blume, 1 826). Dysophylla had been previ- late, narrow, linear to linear-lanceolate with an entire margin. ously recognized as distinct by some authors under different names. Hermann (1717) gave the polynomial Veronica hirsuta latifolia Four species which belong to Bentham's Dysophylla section Zeylanica aquatlca to a species of Dysophylla. Linnaeus (1747) Oppositifoliae (D. auricularia, D. myosuroides, D. rugosa Hook.f. listed a genus Alopecuro-veronica, a name he later cited as a andD. salicifolia Dalzell ex Hook.f.) were transferred toPogostemon synonym of Mentha auricularia (Linnaeus, 1767). The name on the basis of having opposite, broad and petiolate leaves, presence Majorana foetida was given as another synonym, a species de- of crystals in the calyx, and absence of an aerenchyma tissue in the scribed by Rumphius (1750) as Majana foetida. He described it as stem (El-Gazzar & Watson, 1967). Wu & Li (1975) also transferred having no close affinity to other species of Mentha. Blume ( 1 826) D. auricularia and D. falcata C.Y. Wu to Pogostemon but without cited Rumphius' illustration when he recognized Dysophylla as a mentioning any reason for doing so. The removal of D. auricularia, distinct genus based on Dysophylla auricularia (L.) Blume (= in particular, posed a nomenclatural problem because it is the type Mentha auricularia L.). Although he placed Dysophylla next to species ofDysophylla. A solution to this problem was put forward by Mentha L. he considered it different from Mentha by having closure Panigrahi (1976) and Bakhuizen van den Brink & van Steenis of the fruiting calyx, fleshy swelling of the disc, and bearded (1963), who suggested the generic name Eusteralis Raf. for the stamens. At about the same time Blume (1826) published a species remaining species of Dysophylla, those in section Verticillatae. from Java he called P. menthoides Blume. Later, however, Bentham Keng (1978) also placed Dysophylla section Verticillatae in (1829) questioned the placing of P. menthoides in the genus Pogostemon section Eusteralis Raf. However, Panigrahi (1984) Pogostemon because it had naked filaments. referring to Article 22.4 (I.C.B.N. 78) mentioned that Pogostemon Bentham (1829, 1830, 1832-1836) also widened the concept of section Verticillatae Benth. has priority over Pogostemon section Dysophylla by including species described as Mentha by Loureiro Eusteralis (Raf.) H. Keng. (1790) and Roxburgh (1814, 1832). Bentham (1830) divided Several authors found it difficult to distinguish Dysophylla from Dysophylla into two groups on the basis of phyllotaxy, one group Pogostemon (Hasskarl, 1842; Miquel, 1859; Kuntze, 1891; Keng, with opposite leaves and the other verticillate leaves. In Labiatarum 1978). Press (1982) criticized Briquet's division of Pogostemon and et 1 genera species Bentham ( 832) formally recognized these groups Dysophylla because of the obscurity of the characters used. Press' as section and section Verticillatae. Section 1 for the Oppositifoliae ( 982) phenetic analysis of characters found no evidence Oppositifoliae, which agreed with Blume's original description of grouping of taxa as proposed in Briquet's classification. SYSTEMATICS OF POGOSTEMON 79 MATERIALS AND METHODS for 8-12 minutes. Almost all of the samples examined were air dried, but a comparison was made with fresh material, dried using a critical point drier (POLARON) to confirm characterization. All the listed in the account specimens systematic were examined Data were subjected to cladistic analysis and phenetic analysis and used for data analysis. Some other specimens were rejected (Bhatti, 1995). Details and a comparison of the results of different because they were incomplete at the correct state of development or cladistic and phenetic analysis will be reported elsewhere. had no information about their geographical
Recommended publications
  • Well-Known Plants in Each Angiosperm Order
    Well-known plants in each angiosperm order This list is generally from least evolved (most ancient) to most evolved (most modern). (I’m not sure if this applies for Eudicots; I’m listing them in the same order as APG II.) The first few plants are mostly primitive pond and aquarium plants. Next is Illicium (anise tree) from Austrobaileyales, then the magnoliids (Canellales thru Piperales), then monocots (Acorales through Zingiberales), and finally eudicots (Buxales through Dipsacales). The plants before the eudicots in this list are considered basal angiosperms. This list focuses only on angiosperms and does not look at earlier plants such as mosses, ferns, and conifers. Basal angiosperms – mostly aquatic plants Unplaced in order, placed in Amborellaceae family • Amborella trichopoda – one of the most ancient flowering plants Unplaced in order, placed in Nymphaeaceae family • Water lily • Cabomba (fanwort) • Brasenia (watershield) Ceratophyllales • Hornwort Austrobaileyales • Illicium (anise tree, star anise) Basal angiosperms - magnoliids Canellales • Drimys (winter's bark) • Tasmanian pepper Laurales • Bay laurel • Cinnamon • Avocado • Sassafras • Camphor tree • Calycanthus (sweetshrub, spicebush) • Lindera (spicebush, Benjamin bush) Magnoliales • Custard-apple • Pawpaw • guanábana (soursop) • Sugar-apple or sweetsop • Cherimoya • Magnolia • Tuliptree • Michelia • Nutmeg • Clove Piperales • Black pepper • Kava • Lizard’s tail • Aristolochia (birthwort, pipevine, Dutchman's pipe) • Asarum (wild ginger) Basal angiosperms - monocots Acorales
    [Show full text]
  • Species ANALYSIS International Journal for Species ISSN 2319 – 5746 EISSN 2319 – 5754
    Species ANALYSIS International Journal for Species ISSN 2319 – 5746 EISSN 2319 – 5754 Diversity and therapeutic potentiality of the family Lamiaceae in Karnataka State, India: An overview Rama Rao V1҉, Shiddamallayya N2, Kavya N3, Kavya B4, Venkateshwarlu G5 1. Research Officer (Botany), Survey of Medicinal Plants Unit, National Ayurveda Dietetics Research Institute (CCRAS), Govt. Central Pharmacy Annexe, Ashoka Pillar, Jayangar, Bangalore-560011, India. 2. Assistant Research Officer (Botany), Survey of Medicinal Plants Unit, National Ayurveda Dietetics Research Institute (CCRAS), Govt. Central Pharmacy Annexe, Ashoka Pillar, Jayangar, Bangalore-560011, India. 3. Senior Research Fellow (Ayurveda), National Ayurveda Dietetics Research Institute (CCRAS), Govt. Central Pharmacy Annexe, Ashoka Pillar, Jayangar, Bangalore-560011, India. 4. Junior Research Fellow (Botany), National Ayurveda Dietetics Research Institute (CCRAS), Govt. Central Pharmacy Annexe, Ashoka Pillar, Jayangar, Bangalore-560011, India. 5. Research Officer (Scientist-3) in-charge, National Ayurveda Dietetics Research Institute (CCRAS), Govt. Central Pharmacy Annexe, Ashoka Pillar, Jayangar, Bangalore-560011, India. ҉Corresponding author: Survey of Medicinal Plants Unit, National Ayurveda Dietetics Research Institute (CCRAS), Govt. Central Pharmacy Annexe, Ashoka Pillar, Jayangar, Bangalore-560011, India, e-mail: [email protected] Publication History Received: 25 November 2014 Accepted: 11 January 2015 Published: 4 March 2015 Citation Rama Rao V, Shiddamallayya N, Kavya N, Kavya B, Venkateshwarlu G. Diversity and therapeutic potentiality of the family Lamiaceae in Karnataka State, India: An overview. Species, 2015, 13(37), 6-14 ABSTRACT The objective of the present study was to review the potential medicinal plants of Lamiaceae distributed throughout the state of Karnataka, India. Lamiaceae, also called as mint family is one of the largest families including herbs or shrubs often with aroma.
    [Show full text]
  • Lamiales Newsletter
    LAMIALES NEWSLETTER LAMIALES Issue number 4 February 1996 ISSN 1358-2305 EDITORIAL CONTENTS R.M. Harley & A. Paton Editorial 1 Herbarium, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AE, UK The Lavender Bag 1 Welcome to the fourth Lamiales Universitaria, Coyoacan 04510, Newsletter. As usual, we still Mexico D.F. Mexico. Tel: Lamiaceae research in require articles for inclusion in the +5256224448. Fax: +525616 22 17. Hungary 1 next edition. If you would like to e-mail: [email protected] receive this or future Newsletters and T.P. Ramamoorthy, 412 Heart- Alien Salvia in Ethiopia 3 and are not already on our mailing wood Dr., Austin, TX 78745, USA. list, or wish to contribute an article, They are anxious to hear from any- Pollination ecology of please do not hesitate to contact us. one willing to help organise the con- Labiatae in Mediterranean 4 The editors’ e-mail addresses are: ference or who have ideas for sym- [email protected] or posium content. Studies on the genus Thymus 6 [email protected]. As reported in the last Newsletter the This edition of the Newsletter and Relationships of Subfamily Instituto de Quimica (UNAM, Mexi- the third edition (October 1994) will Pogostemonoideae 8 co City) have agreed to sponsor the shortly be available on the world Controversies over the next Lamiales conference. Due to wide web (http://www.rbgkew.org. Satureja complex 10 the current economic conditions in uk/science/lamiales). Mexico and to allow potential partici- This also gives a summary of what Obituary - Silvia Botta pants to plan ahead, it has been the Lamiales are and some of their de Miconi 11 decided to delay the conference until uses, details of Lamiales research at November 1998.
    [Show full text]
  • Indigenous Uses of Wild and Tended Plant Biodiversity Maintain Ecosystem Services in Agricultural Landscapes of the Terai Plains of Nepal
    Indigenous uses of wild and tended plant biodiversity maintain ecosystem services in agricultural landscapes of the Terai Plains of Nepal Jessica P. R. Thorn ( [email protected] ) University of York https://orcid.org/0000-0003-2108-2554 Thomas F. Thornton University of Oxford School of Geography and Environment Ariella Helfgott University of Oxford Katherine J. Willis University of Oxford Department of Zoology, University of Bergen Department of Biology, Kew Royal Botanical Gardens Research Keywords: agrobiodiversity conservation; ethnopharmacology; ethnobotany; ethnoecology; ethnomedicine; food security; indigenous knowledge; medicinal plants; traditional ecological knowledge Posted Date: April 16th, 2020 DOI: https://doi.org/10.21203/rs.2.18028/v3 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at Journal of Ethnobiology and Ethnomedicine on June 8th, 2020. See the published version at https://doi.org/10.1186/s13002-020-00382-4. Page 1/36 Abstract Background Despite a rapidly accumulating evidence base quantifying ecosystem services, the role of biodiversity in the maintenance of ecosystem services in shared human-nature environments is still understudied, as is how indigenous and agriculturally dependent communities perceive, use and manage biodiversity. The present study aims to document traditional ethnobotanical knowledge of the ecosystem service benets derived from wild and tended plants in rice- cultivated agroecosystems, compare this to botanical surveys, and analyse the extent to which ecosystem services contribute social-ecological resilience in the Terai Plains of Nepal. Method Sampling was carried out in four landscapes, 22 Village District Committees and 40 wards in the monsoon season.
    [Show full text]
  • Molecular Characterization of Patchouli (Pogostemon Spp) Germplasm
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Repositório Institucional da Universidade Federal de Sergipe Molecular characterization of patchouli (Pogostemon spp) germplasm S.S. Sandes1, M.I. Zucchi2, J.B. Pinheiro3, M.M. Bajay3, C.E.A. Batista3, F.A. Brito1, M.F. Arrigoni-Blank1, S.V. Alvares-Carvalho1, R. Silva-Mann1 and A.F. Blank1 1Laboratório de Recursos Genéticos e Óleos Essenciais, Departamento de Engenharia Agronômica, Universidade Federal de Sergipe, São Cristóvão, SE, Brasil 2Laboratório de Biologia Molecular, Agência Paulista de Tecnologia dos Agronegócios, Polo Centro Sul, Piracicaba, SP, Brasil 3Laboratório de Diversidade Genética e Melhoramento, Departamento de Genética, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, SP, Brasil Corresponding author: A.F. Blank E-mail: [email protected] Genet. Mol. Res. 15 (1): gmr.15017458 Received August 17, 2015 Accepted October 29, 2015 Published February 19, 2016 DOI http://dx.doi.org/10.4238/gmr.15017458 ABSTRACT. Patchouli [Pogostemon cablin (Blanco) Benth.] is an aromatic, herbaceous plant belonging to the Lamiaceae family native to Southeast Asia. Its leaves produce an essential oil regularly used by the perfume and cosmetics industries. However, since patchouli from the Philippines and India were described and named Pogostemon patchouli, there has been a divergence in the identity of these species. The objective of the current study was to study the genetic diversity of patchouli accessions in the Active Germplasm Bank of Universidade Federal de Sergipe using microsatellite and inter simple sequence repeat markers. The results of both types of molecular markers showed that there are two well-defined clusters of accessions that harbor exclusive alleles.
    [Show full text]
  • Antimicrobial Activity of the Essential Oils of Three Species of Pogostemon
    Journal Home page : www.jeb.co.in « E-mail : [email protected] JEB ISSN: 0254-8704 Journal of Environmental Biology CODEN: JEBIDP Antimicrobial activity of the essential oils of three species of Pogostemon J.E. Thoppil11 *, A. Tajo , J. Minija 1 , M.J. Deena 11 , K. Sreeranjini , L. Leeja 1 , M. Sivadasan 2 and A.H. Alfarhan 2 1Cell and Molecular Biology Division, Department of Botany, University of Calicut, Calicut–673 635, India 2Department of Botany and Microbiology, College of Science, King Saud University, P.B. No. 2455, Riyadh–11451, Kingdom of Saudi Arabia *Corresponding Authors Email : [email protected] Abstract Publication Info Antimicrobial studies on 7 strains of bacteria and 8 strains of fungi using disk diffusion assay, revealed Paper received: potential activities of crude essential oils in Pogostemon benghalensis, P. purpurascens and P. vestitus. 10 January 2013 Essential oils produced highest inhibition zones against Staphylococcus aureus (39.33, 37.33 and 35.67 mm for P. benghalensis essential oil) and Candida albicans (34.33, 26.33 and 17.67 mm for P. purpurascens essential oil) among bacteria and fungi respectively, when compared with pure reference Revised received: -1 25 July 2013 standards (35 mm for Gentamycin sulphate (40 mg ml ) against S. aureus and 30.33 mm for Nystatin [50 IU] against C. albicans). Results also indicated the existence of potential antimicrobial activity of Pogostemon essential oils against other microorganisms viz., Proteus vulgaris, E. coli and Aspergillus Re-revised received: parasiticus. Leaf essential oils of P. purpurascens and P. benghalensis can be considered as a new source 05 September 2013 for developing local antifungal and antibacterial agents.
    [Show full text]
  • A Taxonomic Study of Lamiaceae (Mint Family) in Rajpipla (Gujarat, India)
    World Applied Sciences Journal 32 (5): 766-768, 2014 ISSN 1818-4952 © IDOSI Publications, 2014 DOI: 10.5829/idosi.wasj.2014.32.05.14478 A Taxonomic Study of Lamiaceae (Mint Family) in Rajpipla (Gujarat, India) 12Bhavin A. Suthar and Rajesh S. Patel 1Department of Botany, Shri J.J.T. University, Vidyanagari, Churu-Bishau Road, Jhunjhunu, Rajasthan-333001 2Biology Department, K.K. Shah Jarodwala Maninagar, Science College, Ahmedabad Gujarat, India Abstract: Lamiaceae is well known for its medicinal herbs. It is well represented in Rajpipla forest areas in Gujarat State, India. However, data or information is available on these plants are more than 35 years old. There is a need to be make update the information in terms of updated checklist, regarding the morphological and ecological data and their distribution ranges. Hence the present investigation was taken up to fulfill the knowledge gap. In present work 13 species belonging to 8 genera are recorded including 8 rare species. Key words: Lamiaceae Rajpipla forest Gujarat INTRODUCTION recorded by masters. Many additional species have been described from this area. Shah [2] in his Flora of Gujarat The Lamiaceae is a very large plant family occurring state recoded 38 species under 17 genera for this family. all over the world in a wide variety of habitats from alpine Before that 5 genera and 7 species were recorded in First regions through grassland, woodland and forests to arid Forest flora of Gujarat [3]. and coastal areas. Plants are botanically identified by their Erlier “Rajpipla” was a small state in the British India; family name, genus and species.
    [Show full text]
  • Lamiales – Synoptical Classification Vers
    Lamiales – Synoptical classification vers. 2.6.2 (in prog.) Updated: 12 April, 2016 A Synoptical Classification of the Lamiales Version 2.6.2 (This is a working document) Compiled by Richard Olmstead With the help of: D. Albach, P. Beardsley, D. Bedigian, B. Bremer, P. Cantino, J. Chau, J. L. Clark, B. Drew, P. Garnock- Jones, S. Grose (Heydler), R. Harley, H.-D. Ihlenfeldt, B. Li, L. Lohmann, S. Mathews, L. McDade, K. Müller, E. Norman, N. O’Leary, B. Oxelman, J. Reveal, R. Scotland, J. Smith, D. Tank, E. Tripp, S. Wagstaff, E. Wallander, A. Weber, A. Wolfe, A. Wortley, N. Young, M. Zjhra, and many others [estimated 25 families, 1041 genera, and ca. 21,878 species in Lamiales] The goal of this project is to produce a working infraordinal classification of the Lamiales to genus with information on distribution and species richness. All recognized taxa will be clades; adherence to Linnaean ranks is optional. Synonymy is very incomplete (comprehensive synonymy is not a goal of the project, but could be incorporated). Although I anticipate producing a publishable version of this classification at a future date, my near- term goal is to produce a web-accessible version, which will be available to the public and which will be updated regularly through input from systematists familiar with taxa within the Lamiales. For further information on the project and to provide information for future versions, please contact R. Olmstead via email at [email protected], or by regular mail at: Department of Biology, Box 355325, University of Washington, Seattle WA 98195, USA.
    [Show full text]
  • Building an Octaploid Genome and Transcriptome of the Medicinal Plant
    www.nature.com/scientificdata OPEN Data Descriptor: Building an octaploid genome and transcriptome of the medicinal plant Pogostemon cablin from Received: 19 June 2018 Accepted: 21 September 2018 Lamiales Published: 11 December 2018 1 2 3 1 3 1 Yang He ,*, Fu Peng ,*, Cao Deng ,*, Liang Xiong , Zi-yan Huang , Ruo-qi Zhang , 3 1 Meng-jia Liu & Cheng Peng The Lamiales order presents highly varied genome sizes and highly specialized life strategies. Patchouli, Pogostemon cablin (Blanco) Benth. from the Lamiales, has been widely cultivated in tropical and subtropical areas of Asia owing to high demand for its essential oil. Here, we generated ~681 Gb genomic sequences (~355X coverage) for the patchouli, and the assembled genome is ~1.91 Gb and with 110,850 predicted protein-coding genes. Analyses showed clear evidence of whole-genome octuplication (WGO) since the pan-eudicots γ triplication, which is a recent and exclusive polyploidization event and occurred at ~6.31 million years ago. Analyses of TPS gene family showed the expansion of type-a, which is responsible for the synthesis of sesquiterpenes and maybe highly specialization in patchouli. Our datasets provide valuable resources for plant genome evolution, and for identifying of genes related to secondary metabolites and their gene expression regulation. phylogenetic analysis objective • replicate design • sequence assembly Design Type(s) objective Measurement Type(s) whole genome sequencing • transcriptional profiling assay Technology Type(s) DNA sequencing • RNA sequencing Factor Type(s) Read Length • biological replicate Sample Characteristic(s) Pogostemon cablin • root • stem • leaf 1 State Key Laboratory Breeding Base of Systematic Research, Development and Utilization of Chinese Medicine 2 Resources, Chengdu University of Traditional Chinese Medicine, Chengdu, 610075, China.
    [Show full text]
  • (Pogostemon Cablin (Blanco) Benth) an Aromatic Medicinal Plant
    Int. J. Pharm. Sci. Rev. Res., 21(2), Jul – Aug 2013; nᵒ 02, 7-15 ISSN 0976 – 044X Review Article Phytochemical, Pharmacological importance of Patchouli (Pogostemon cablin (Blanco) Benth) an aromatic medicinal plant Chakrapani.P, Venkatesh.K, Chandra Sekhar Singh.B, Arun Jyothi.B, Prem Kumar, Amareshwari.P, A. Roja Rani* *Department of Genetics and Biotechnology, Osmania University, Hyderabad, Andhra Pradesh, India. *Corresponding author’s E-mail: [email protected] Accepted on: 29-04-2013; Finalized on: 31-07-2013. ABSTRACT Aromatic plants have been commercially used as spices, natural flavor, raw material for essential-oil industry and other medicinal purpose. The use of essential oils continues to rise, both as a separate commodity and indirectly through a large range of beauty- care and aromatherapy products. Patchouli (Pogostemon cablin (Blanco) Benth; is a species from the genus Pogostemon and a bushy herb of the mint family. Patchouli leaves are the source for essential oils that constitutes more than 70 chemical compounds. The presence of these compounds imparts excellent therapeutic properties to Patchouli oils that cure various problems tormenting human beings. Production of patchouli oil in India is limited (10–15 tons/ annum). Global demand of Patchouli is 1600 tons of oil per annum with a value of 240 crores. It helps cultivators to meet the demand of the spices and pharmaceutical industry. The present communication constitutes a review on the study of phytochemistry, pharmacological activities, medicinal importance of an aromatic medicinal plant, Patchouli (Pogostemon cablin Blanco) Benth. A wide range of phytochemical constituents have been isolated from Patchouli (Pogostemon cablin (Blanco) Benth which possesses activities like antimicrobial, cytotoxic activity, antiemetic activity, analgesic, anti-mutagenic activity and anti-inflammatory activity and other important activities.
    [Show full text]
  • Survey of the Genome of Pogostemon Cablin Provides Insights Into Its Evolutionary History and Sesquiterpenoid Biosynthesis
    www.nature.com/scientificreports OPEN Survey of the genome of Pogostemon cablin provides insights into its evolutionary history and Received: 26 October 2015 Accepted: 03 May 2016 sesquiterpenoid biosynthesis Published: 20 May 2016 Yang He1,*, Hongtao Xiao2,3,*, Cao Deng4, Liang Xiong1, Hu Nie4 & Cheng Peng1 Pogostemon cablin (Blanco) Benth. (Patchouli) is an important traditional Chinese medicinal plant that has both essential oil value and a broad range of therapeutic effects. Here we report the firstde novo assembled 1.15-Gb draft genome sequence for P. cablin from next-generation sequencing technology. Our assembly, with a misassembly rate of <4 bp per 100 kb, is ~73% of the predicted genome size (1.57 Gb). Analysis of whole-genome sequences identified 3,147,333 heterozygous single-nucleotide polymorphisms and 490,407 insertions and deletions, giving an estimated heterozygosity rate of 0.274%. A comprehensive annotation pipeline indicated that repetitive sequences make up 58.55% of the assemblies, and that there are estimated 45,020 genes. Comparative genomics analysis showed that the Phrymaceae and Lamiaceae family split ~62.80 Mya, and the divergence between patchouli and sesame occurred ~52.42 Mya, implying a potentially shared recent whole-genome duplication event. Analysis of gene homologs involved in sesquiterpenoid biosynthesis showed that patchouli contains key genes involved in more sesquiterpenoid types and has more copies of genes for each sesquiterpenoid type than several other related plant species. The patchouli genome will facilitate future research on secondary metabolic pathways and their regulation as well as potential selective breeding of patchouli. Lamiaceae, the mint family of flowering plants, has broad distribution and, with more than 7000 species, and it is the largest family of the order Lamiales.
    [Show full text]
  • Supplementary Materials
    Supplementary Materials Figure S1. mVISTA plot showing the percent identity of plastid genomes between each of four Pogostemon species and the reference Pogostemon cablin based on pairwise global sequence alignments. The grey arrows at the top of the graph indicate annotated genes with their locations and orientations. Colored peaks (dark blue, protein-coding gene; light blue, tRNAs and rRNAs; pink, conserved non-coding sequences) indicate regions with at least 50% similarity calculated from 50 bp sliding windows. Figure S2. IRa-SSC and SSC-IRb boundaries in five Pogostemon chloroplast genomes. Figure S3. Maximum likelihood tree of 43 Lamiaceae accessions and four outgroups inferred from a concatenated codon matrix of 80 plastid protein-coding genes with gene partitions. Red clade: Stachydeae + Galeopsis + Lamieae + Leonureae, blue clade: Pogostemon, yellow clade: Scutellarioideae, and green clade: Nepetoideae. The group with red and blue colors is the Lamioideae. Numbers on the branches are bootstrap support values. Figure S4. Maximum likelihood tree of 43 Lamiaceae accessions and four outgroups inferred from a concatenated codon supermatrix of 80 plastid protein-coding genes without partitions. Red clade: Stachydeae + Galeopsis + Lamieae + Leonureae, blue clade: Pogostemon, yellow clade: Scutellarioideae, and green clade: Nepetoideae. The group with red and blue colors is the Lamioideae. Numbers on the branches are bootstrap support values. Table S1. Number of phylogenetically informative characters (PICs), and dN, dS and ω values, for
    [Show full text]