Mechanistic Insight Into WEB-2170-Induced Apoptosis In
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Deciphering the Functions of Ets2, Pten and P53 in Stromal Fibroblasts in Multiple
Deciphering the Functions of Ets2, Pten and p53 in Stromal Fibroblasts in Multiple Breast Cancer Models DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Julie Wallace Graduate Program in Molecular, Cellular and Developmental Biology The Ohio State University 2013 Dissertation Committee: Michael C. Ostrowski, PhD, Advisor Gustavo Leone, PhD Denis Guttridge, PhD Dawn Chandler, PhD Copyright by Julie Wallace 2013 Abstract Breast cancer is the second most common cancer in American women, and is also the second leading cause of cancer death in women. It is estimated that nearly a quarter of a million new cases of invasive breast cancer will be diagnosed in women in the United States this year, and approximately 40,000 of these women will die from breast cancer. Although death rates have been on the decline for the past decade, there is still much we need to learn about this disease to improve prevention, detection and treatment strategies. The majority of early studies have focused on the malignant tumor cells themselves, and much has been learned concerning mutations, amplifications and other genetic and epigenetic alterations of these cells. However more recent work has acknowledged the strong influence of tumor stroma on the initiation, progression and recurrence of cancer. Under normal conditions this stroma has been shown to have protective effects against tumorigenesis, however the transformation of tumor cells manipulates this surrounding environment to actually promote malignancy. Fibroblasts in particular make up a significant portion of this stroma, and have been shown to impact various aspects of tumor cell biology. -
A Yeast Phenomic Model for the Gene Interaction Network Modulating
Louie et al. Genome Medicine 2012, 4:103 http://genomemedicine.com/content/4/12/103 RESEARCH Open Access A yeast phenomic model for the gene interaction network modulating CFTR-ΔF508 protein biogenesis Raymond J Louie3†, Jingyu Guo1,2†, John W Rodgers1, Rick White4, Najaf A Shah1, Silvere Pagant3, Peter Kim3, Michael Livstone5, Kara Dolinski5, Brett A McKinney6, Jeong Hong2, Eric J Sorscher2, Jennifer Bryan4, Elizabeth A Miller3* and John L Hartman IV1,2* Abstract Background: The overall influence of gene interaction in human disease is unknown. In cystic fibrosis (CF) a single allele of the cystic fibrosis transmembrane conductance regulator (CFTR-ΔF508) accounts for most of the disease. In cell models, CFTR-ΔF508 exhibits defective protein biogenesis and degradation rather than proper trafficking to the plasma membrane where CFTR normally functions. Numerous genes function in the biogenesis of CFTR and influence the fate of CFTR-ΔF508. However it is not known whether genetic variation in such genes contributes to disease severity in patients. Nor is there an easy way to study how numerous gene interactions involving CFTR-ΔF would manifest phenotypically. Methods: To gain insight into the function and evolutionary conservation of a gene interaction network that regulates biogenesis of a misfolded ABC transporter, we employed yeast genetics to develop a ‘phenomic’ model, in which the CFTR-ΔF508-equivalent residue of a yeast homolog is mutated (Yor1-ΔF670), and where the genome is scanned quantitatively for interaction. We first confirmed that Yor1-ΔF undergoes protein misfolding and has reduced half-life, analogous to CFTR-ΔF. Gene interaction was then assessed quantitatively by growth curves for approximately 5,000 double mutants, based on alteration in the dose response to growth inhibition by oligomycin, a toxin extruded from the cell at the plasma membrane by Yor1. -
Epigenome-Wide Exploratory Study of Monozygotic Twins Suggests Differentially Methylated Regions to Associate with Hand Grip Strength
Biogerontology (2019) 20:627–647 https://doi.org/10.1007/s10522-019-09818-1 (0123456789().,-volV)( 0123456789().,-volV) RESEARCH ARTICLE Epigenome-wide exploratory study of monozygotic twins suggests differentially methylated regions to associate with hand grip strength Mette Soerensen . Weilong Li . Birgit Debrabant . Marianne Nygaard . Jonas Mengel-From . Morten Frost . Kaare Christensen . Lene Christiansen . Qihua Tan Received: 15 April 2019 / Accepted: 24 June 2019 / Published online: 28 June 2019 Ó The Author(s) 2019 Abstract Hand grip strength is a measure of mus- significant CpG sites or pathways were found, how- cular strength and is used to study age-related loss of ever two of the suggestive top CpG sites were mapped physical capacity. In order to explore the biological to the COL6A1 and CACNA1B genes, known to be mechanisms that influence hand grip strength varia- related to muscular dysfunction. By investigating tion, an epigenome-wide association study (EWAS) of genomic regions using the comb-p algorithm, several hand grip strength in 672 middle-aged and elderly differentially methylated regions in regulatory monozygotic twins (age 55–90 years) was performed, domains were identified as significantly associated to using both individual and twin pair level analyses, the hand grip strength, and pathway analyses of these latter controlling the influence of genetic variation. regions revealed significant pathways related to the Moreover, as measurements of hand grip strength immune system, autoimmune disorders, including performed over 8 years were available in the elderly diabetes type 1 and viral myocarditis, as well as twins (age 73–90 at intake), a longitudinal EWAS was negative regulation of cell differentiation. -
Biogenesis and Maintenance of Cytoplasmic Domains in Myelin of the Central Nervous System
Biogenesis and Maintenance of Cytoplasmic Domains in Myelin of the Central Nervous System Dissertation for the award of the degree “Doctor rerum naturalium” of the Georg-August-Universität Göttingen within the doctoral program Molecular Biology of Cells of the Georg-August University School of Science (GAUSS) submitted by Caroline Julia Velte from Usingen, Germany Göttingen 2016 Members of the Thesis Committee: Prof. Dr. Mikael Simons, Reviewer Max Planck Institute of Experimental Medicine, Göttingen Prof. Dr. Andreas Janshoff, Reviewer Georg-August University, Göttingen Prof. Dr. Dirk Görlich Max Planck Institute of Biophysical Chemistry, Göttingen Date of the thesis defense: 27th of June 2016 Don't part with your illusions. When they are gone, you may still exist, but you have ceased to live. (Mark Twain) III Affidavit I hereby declare that my PhD thesis “Biogenesis and Maintenance of Cytoplasmic Domains in Myelin of the Central Nervous System” has been written independently with no other aids or sources than quoted. Furthermore, I confirm that this thesis has not been submitted as part of another examination process neither in identical nor in similar form. Caroline Julia Velte April 2016 Göttingen, Germany V Publications Nicolas Snaidero*, Caroline Velte*, Matti Myllykoski, Arne Raasakka, Alexander Ignatev, Hauke B. Werner, Michelle S. Erwig, Wiebke Moebius, Petri Kursula, Klaus-Armin Nave, and Mikael Simons Antagonistic Functions of MBP and CNP Establish Cytosolic Channels in CNS Myelin, Cell Reports 18 *equal contribution (January 2017) E. d’Este, D. Kamin, C. Velte, F. Göttfert, M. Simons, S.W. Hell Subcortical cytoskeleton periodicity throughout the nervous system, Scientific Reports 6 (March 2016) K.A. -
Discovery and the Genic Map of the Human Genome
Downloaded from genome.cshlp.org on October 6, 2021 - Published by Cold Spring Harbor Laboratory Press RESEARCH The Genexpress Index: A Resource for Gene Discovery and the Genic Map of the Human Genome R6mi Houlgatte, 1'2'3' R6gine Mariage-Samson, 1'2'3 Simone Duprat, 2 Anne Tessier, 2 Simone Bentolila, 1'2 Bernard Lamy, 2 and Charles Auffray 1'2'4 1Genexpress, Centre National de la Recherche Scientifique (CNRS) UPR420, 94801 Villejuif CEDEX, France; 2Genexpress, G4n6thon, 91002 Evry CEDEX, France Detailed analysis of a set of 18,698 sequences derived from both ends of 10,979 human skeletal muscle and brain cDNA clones defined 6676 functional families, characterized by their sequence signatures over 5750 distinct human gene transcripts. About half of these genes have been assigned to specific chromosomes utilizing 2733 eSTS markers, the polymerase chain reaction, and DNA from human-rodent somatic cell hybrids. Sequence and clone clustering and a functional classification together with comprehensive data base searches and annotations made it possible to develop extensive sequence and map cross-indexes, define electronic expression profiles, identify a new set of overlapping genes, and provide numerous new candidate genes for human pathologies. During the last 20 years, since the first descrip- 1993; Park et al. 1993; Takeda et al. 1993; Affara tions of eucaryotic cDNA cloning (Rougeon et al. et al. 1994; Davies et al. 1994; Kerr et al. 1994; 1975; Efstratiadis et al. 1976), cDNA studies have Konishi et al. 1994; Kurata et al. 1994; Liew et al. played a central role in molecular genetics. Early 1994; Murakawa et al. -
Yeast Genome Gazetteer P35-65
gazetteer Metabolism 35 tRNA modification mitochondrial transport amino-acid metabolism other tRNA-transcription activities vesicular transport (Golgi network, etc.) nitrogen and sulphur metabolism mRNA synthesis peroxisomal transport nucleotide metabolism mRNA processing (splicing) vacuolar transport phosphate metabolism mRNA processing (5’-end, 3’-end processing extracellular transport carbohydrate metabolism and mRNA degradation) cellular import lipid, fatty-acid and sterol metabolism other mRNA-transcription activities other intracellular-transport activities biosynthesis of vitamins, cofactors and RNA transport prosthetic groups other transcription activities Cellular organization and biogenesis 54 ionic homeostasis organization and biogenesis of cell wall and Protein synthesis 48 plasma membrane Energy 40 ribosomal proteins organization and biogenesis of glycolysis translation (initiation,elongation and cytoskeleton gluconeogenesis termination) organization and biogenesis of endoplasmic pentose-phosphate pathway translational control reticulum and Golgi tricarboxylic-acid pathway tRNA synthetases organization and biogenesis of chromosome respiration other protein-synthesis activities structure fermentation mitochondrial organization and biogenesis metabolism of energy reserves (glycogen Protein destination 49 peroxisomal organization and biogenesis and trehalose) protein folding and stabilization endosomal organization and biogenesis other energy-generation activities protein targeting, sorting and translocation vacuolar and lysosomal -
Interplay Between Uridylation and Deadenylation During Mrna Degradation in Arabidopsis Thaliana
$FNQRZOHGJPHQWV &ŝƌƐƚ͕/ǁŽƵůĚůŝŬĞƚŽƚŚĂŶŬaƚĢƉĄŶŬĂsĂŸĄēŽǀĄ ͕ŶĚƌĞĂƐtĂĐŚƚĞƌĂŶĚ&ĂďŝĞŶŶĞDĂƵdžŝŽŶĨŽƌŚĂǀŝŶŐ ĂĐĐĞƉƚĞĚƚŽĞǀĂůƵĂƚĞŵLJǁŽƌŬ͘DĞƌĐŝĠŐĂůĞŵĞŶƚ ĂƵ>ĂďdžEĞƚZEĚ͛ĂǀŽŝƌĨŝŶĂŶĐĠŵĂƚŚğƐĞ͘ :͛ĂŝŵĞƌĂŝƐƌĞŵĞƌĐŝĞƌŵŽŶĚŝƌĞĐƚĞƵƌĚĞƚŚğƐĞ ͕ŽŵŝŶŝƋƵĞ'ĂŐůŝĂƌĚŝ;ͨ'ĂŐͩͿ͕ ĚĞŵ͛ĂǀŽŝƌĂĐĐƵĞŝůůŝ ĂƵƐĞŝŶĚĞƐŽŶĠƋƵŝƉĞĞƚĚĞŵ͛ĂǀŽŝƌƐŽƵƚĞŶƵ ƚŽƵƚĂƵůŽŶŐĚĞŵĂƚŚğƐĞ͘:ĞƚĞƌĞŵĞƌĐŝĞƉŽƵƌƚŽŶ ĞdžƉĞƌƚŝƐĞ͕ƚ ĞƐƉƌĠĐŝĞƵdžĐŽŶƐĞŝůƐĞƚůĞƐ;ůŽŶŐƵĞƐ͙ ͿĚŝƐĐƵƐƐŝŽŶƐƐĐŝĞŶƚŝĨŝƋƵĞƐƋƵŝŵ͛ŽŶƚďĞĂƵĐŽƵƉ ĂƉƉŽƌƚĠĞƚĂŝĚĠăĚĠǀĞůŽƉƉĞƌŵŽŶĞƐƉƌŝƚĐƌŝƚŝƋƵĞĞƚƐĐŝĞŶƚŝĨŝƋƵĞ͘ hŶŐƌĂŶĚŵĞƌĐŝă,ĠůğŶĞƵďĞƌƉŽƵƌƐĂŐĞŶƚŝůůĞƐƐĞĞƚƐĂƉĂƚŝĞŶĐĞĚƵƌĂŶƚĐĞƐϰĂŶŶĠĞƐ͘DĞƌĐŝƉŽƵƌ ƚŽŶ ƐŽƵƚŝĞŶ ŵŽƌĂů Ğƚ ŝŶƚĞůůĞĐƚƵĞů͕ ƚƵ ĂƐ ƚŽƵũŽƵƌƐ ĠƚĠ ůă ƉŽƵƌ ƌĠƉŽŶĚƌĞ ă ŵĞƐ ŝŶŶŽŵďƌĂďůĞƐ ƋƵĞƐƚŝŽŶƐĞƚƚƵĂƐƚŽƵũŽƵƌƐƐƵŵ͛ĞŶĐŽƵƌĂŐĞƌƋƵĂŶĚĕĂŶ͛ĂůůĂŝƚƉĂƐƚƌŽƉ͘ ƚŵĞƌĐŝĂƵƐƐŝƉŽƵƌƚĂ ƉĂƚŝĞŶĐĞ Ğƚ ƚ ĞƐ ďŽŶƐ ĐŽŶƐĞŝůƐ ůŽƌƐ ĚĞ ů͛ĠĐƌŝƚƵƌĞ ĚĞ ĐĞƚƚĞ ƚŚğƐĞ͘ dƵ ĞƐ ƵŶĞ ƉĞƌƐŽŶŶĞ Ğƚ ƵŶĞ ƐĐŝĞŶƚŝĨŝƋƵĞ ƌĞŵĂƌƋƵĂďůĞ͕ ũĞ ƐƵŝƐ ĐŽŶĨŝĂŶƚĞ ƋƵĞ ƚƵ ŝƌĂƐ ůŽŝŶ ĚĂŶƐ ƚĂ ǀŝĞ ƉĞƌƐŽŶŶĞůůĞ Ğƚ ƉƌŽĨĞƐƐŝŽŶŶĞůůĞ͊ ŝŶ ďĞƐŽŶĚĞƌĞƌ ĂŶŬ Őŝůƚ ,ĞŝŬĞ Ĩƺƌ ŝŚƌĞ ĞƚƌĞƵƵŶŐ ƵŶĚ ŝŚƌĞ ŐƵƚĞŶ ZĂƚƐĐŚůćŐĞ͘ /ĐŚ ĚĂŶŬĞ Ěŝƌ ĂƵĨƌŝĐŚƚŝŐĨƺƌĚĞŝŶĞŶŬŽŶƐƚƌƵŬƚŝǀĞŶĞŝƚƌĂŐƵŶĚĚĞŝŶĞƵŶĞƌŵƺĚůŝĐŚĞhŶƚĞƌƐƚƺƚnjƵŶŐ͕ĚŝĞŵŝƌďĞŝĚĞƌ hŵƐĞƚnjƵŶŐĚŝĞƐĞƐDĂŶƵƐŬƌŝƉƚƐƐĞŚƌŐĞŚŽůĨĞŶŚĂďĞŶ͘,ćƚƚĞƐƚĚƵŵŝĐŚĚĂŵĂůƐŶŝĐŚƚĂůƐWƌĂŬƚŝŬĂŶƚŝŶ ŐĞŶŽŵŵĞŶ͕ǁćƌĞŝĐŚǁŽŚůũĞƚnjƚŶŝĐŚƚŚŝĞƌ͘ƵďŝƐƚĞŝŶĞƐĞŚƌĂƵĨŵĞƌŬƐĂŵĞƵŶĚŚŝůĨƐďĞƌĞŝƚĞWĞƌƐŽŶ͕ ĚŝĞŝĐŚƐĞŚƌƐĐŚćƚnjĞƵŶĚŶŝĐŚƚƐŽƐĐŚŶĞůůǀĞƌŐĞƐƐĞŶǁĞƌĚĞ͘ DĞƌĐŝăDĂƌůğŶĞĞƚ,ĠůğŶĞĚ͛ĂǀŽŝƌĠƚĠ ůă͊sŽƵƐġƚĞƐĚĞƐĂŵŝĞƐƉƌĠĐŝĞƵƐĞƐƋƵĞũĞŶĞƐƵŝƐƉĂƐƉƌġƚĞ ăŽƵďůŝĞƌ͊DĞƌĐŝDĂƌůğŶĞƉŽƵƌƚŽŶŐƌĂŝŶĚĞĨŽůŝĞ͕ƚĂďŽŶŶĞŚƵŵĞƵƌĞƚƚŽŶŚŽŶŶġƚĞƚĠ͕ĞƚƉŽƵƌƚŽƵƐ ĐĞƐ ŵŽŵĞŶƚƐ ƉĂƐƐĠƐ ĂƵ ůĂďŽ Ğƚ ƐƵƌƚŽƵƚ ĞŶ ĚĞŚŽƌƐ ĚƵ ůĂďŽ ĂǀĞĐ ,ĠůğŶĞ ͊ DĞƌĐŝ ,ĠůğŶĞ͕ ũĞ -
Congenital Disorders of Glycosylation from a Neurological Perspective
brain sciences Review Congenital Disorders of Glycosylation from a Neurological Perspective Justyna Paprocka 1,* , Aleksandra Jezela-Stanek 2 , Anna Tylki-Szyma´nska 3 and Stephanie Grunewald 4 1 Department of Pediatric Neurology, Faculty of Medical Science in Katowice, Medical University of Silesia, 40-752 Katowice, Poland 2 Department of Genetics and Clinical Immunology, National Institute of Tuberculosis and Lung Diseases, 01-138 Warsaw, Poland; [email protected] 3 Department of Pediatrics, Nutrition and Metabolic Diseases, The Children’s Memorial Health Institute, W 04-730 Warsaw, Poland; [email protected] 4 NIHR Biomedical Research Center (BRC), Metabolic Unit, Great Ormond Street Hospital and Institute of Child Health, University College London, London SE1 9RT, UK; [email protected] * Correspondence: [email protected]; Tel.: +48-606-415-888 Abstract: Most plasma proteins, cell membrane proteins and other proteins are glycoproteins with sugar chains attached to the polypeptide-glycans. Glycosylation is the main element of the post- translational transformation of most human proteins. Since glycosylation processes are necessary for many different biological processes, patients present a diverse spectrum of phenotypes and severity of symptoms. The most frequently observed neurological symptoms in congenital disorders of glycosylation (CDG) are: epilepsy, intellectual disability, myopathies, neuropathies and stroke-like episodes. Epilepsy is seen in many CDG subtypes and particularly present in the case of mutations -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Hypomethylation-Linked Activation of PLCE1 Impedes Autophagy and Promotes Tumorigenesis Through MDM2-Mediated Ubiquitination and Destabilization of P53
Author Manuscript Published OnlineFirst on February 17, 2020; DOI: 10.1158/0008-5472.CAN-19-1912 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Hypomethylation-linked activation of PLCE1 impedes autophagy and promotes tumorigenesis through MDM2-mediated ubiquitination and destabilization of p53 Yunzhao Chen1,3*, Huahua Xin1*, Hao Peng1*, Qi Shi1, Menglu Li1, Jie Yu3, Yanxia Tian1, Xueping Han1, Xi Chen1, Yi Zheng4, Jun Li5, Zhihao Yang1, Lan Yang1, Jianming Hu1, Xuan Huang2, Zheng Liu2, Xiaoxi Huang2, Hong Zhou6, Xiaobin Cui1**, Feng Li1,2** 1 Department of Pathology and Key Laboratory for Xinjiang Endemic and Ethnic Diseases, The First Affiliated Hospital, Shihezi University School of Medicine, Shihezi 832002, China; 2 Department of Pathology and Medical Research Center, Beijing Chaoyang Hospital, Capital Medical University, Beijing 100020, China; 3 The people's hospital of Suzhou National Hi-Tech District, Suzhou 215010, China; 4 Department of Gastroenterology, The First Affiliated Hospital, Shihezi University School of Medicine, Shihezi 832002, China; 5 Department of Ultrasound, The First Affiliated Hospital, Shihezi University School of Medicine, Shihezi 832002, China; 6 Bone Research Program, ANZAC Research Institute, The University of Sydney, Sydney, Australia. Running title: PLCE1 impedes autophagy via MDM2-p53 axis in ESCC *These authors contributed equally to this work. Corresponding authors: **Xiaobin Cui, Department of Pathology and Key Laboratory for Xinjiang Endemic and Ethnic Diseases, The First Affiliated Hospital, Shihezi University School of Medicine, Shihezi 832002, China. Phone: 86.0377.2850955; E-mail: [email protected]; **Feng Li, Department of Pathology and Medical Research Center, Beijing Chaoyang Hospital, Capital Medical University, Beijing 100020, China. -
Senescence-Associated Ribosome Biogenesis Defects Contributes to Cell Cycle Arrest Through the Rb Pathway
ARTICLES https://doi.org/10.1038/s41556-018-0127-y Senescence-associated ribosome biogenesis defects contributes to cell cycle arrest through the Rb pathway Frédéric Lessard1, Sebastian Igelmann1, Christian Trahan2, Geneviève Huot1, Emmanuelle Saint-Germain1, Lian Mignacca1, Neylen Del Toro1, Stéphane Lopes-Paciencia1, Benjamin Le Calvé5, Marinieve Montero1, Xavier Deschênes-Simard4, Marina Bury6, Olga Moiseeva7, Marie-Camille Rowell1, Cornelia E. Zorca1, Daniel Zenklusen 1, Léa Brakier-Gingras1, Véronique Bourdeau1, Marlene Oeffinger1,2,3 and Gerardo Ferbeyre 1* Cellular senescence is a tumour suppressor programme characterized by a stable cell cycle arrest. Here we report that cellular senescence triggered by a variety of stimuli leads to diminished ribosome biogenesis and the accumulation of both rRNA pre- cursors and ribosomal proteins. These defects were associated with reduced expression of several ribosome biogenesis factors, the knockdown of which was also sufficient to induce senescence. Genetic analysis revealed that Rb but not p53 was required for the senescence response to altered ribosome biogenesis. Mechanistically, the ribosomal protein S14 (RPS14 or uS11) accu- mulates in the soluble non-ribosomal fraction of senescent cells, where it binds and inhibits CDK4 (cyclin-dependent kinase 4). Overexpression of RPS14 is sufficient to inhibit Rb phosphorylation, inducing cell cycle arrest and senescence. Here we describe a mechanism for maintaining the senescent cell cycle arrest that may be relevant for cancer therapy, as well as biomarkers to identify senescent cells. ellular senescence opposes neoplastic transformation by by cyclin-dependent kinases such as CDK2, CDK4 and CDK618. preventing the proliferation of cells that have experienced Genetic inactivation of CDK4 leads to p53-independent senes- oncogenic stimuli1. -
Identification of Transcriptional Mechanisms Downstream of Nf1 Gene Defeciency in Malignant Peripheral Nerve Sheath Tumors Daochun Sun Wayne State University
Wayne State University DigitalCommons@WayneState Wayne State University Dissertations 1-1-2012 Identification of transcriptional mechanisms downstream of nf1 gene defeciency in malignant peripheral nerve sheath tumors Daochun Sun Wayne State University, Follow this and additional works at: http://digitalcommons.wayne.edu/oa_dissertations Recommended Citation Sun, Daochun, "Identification of transcriptional mechanisms downstream of nf1 gene defeciency in malignant peripheral nerve sheath tumors" (2012). Wayne State University Dissertations. Paper 558. This Open Access Dissertation is brought to you for free and open access by DigitalCommons@WayneState. It has been accepted for inclusion in Wayne State University Dissertations by an authorized administrator of DigitalCommons@WayneState. IDENTIFICATION OF TRANSCRIPTIONAL MECHANISMS DOWNSTREAM OF NF1 GENE DEFECIENCY IN MALIGNANT PERIPHERAL NERVE SHEATH TUMORS by DAOCHUN SUN DISSERTATION Submitted to the Graduate School of Wayne State University, Detroit, Michigan in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY 2012 MAJOR: MOLECULAR BIOLOGY AND GENETICS Approved by: _______________________________________ Advisor Date _______________________________________ _______________________________________ _______________________________________ © COPYRIGHT BY DAOCHUN SUN 2012 All Rights Reserved DEDICATION This work is dedicated to my parents and my wife Ze Zheng for their continuous support and understanding during the years of my education. I could not achieve my goal without them. ii ACKNOWLEDGMENTS I would like to express tremendous appreciation to my mentor, Dr. Michael Tainsky. His guidance and encouragement throughout this project made this dissertation come true. I would also like to thank my committee members, Dr. Raymond Mattingly and Dr. John Reiners Jr. for their sustained attention to this project during the monthly NF1 group meetings and committee meetings, Dr.