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Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Quercus Bawanglingensis Huang, Li Et Xing, a Vulnerable Oak Tree in China
Article Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Quercus bawanglingensis Huang, Li et Xing, a Vulnerable Oak Tree in China Xue Liu 1 , Er-Mei Chang 1, Jian-Feng Liu 1,* , Yue-Ning Huang 1, Ya Wang 1, Ning Yao 1 and Ze-Ping Jiang 1,2 1 Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China 2 Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing 100091, China * Correspondence: [email protected] Received: 5 June 2019; Accepted: 12 July 2019; Published: 15 July 2019 Abstract: Quercus bawanglingensis Huang, Li et Xing, an endemic evergreen oak of the genus Quercus (Fagaceae) in China, is currently listed in the Red List of Chinese Plants as a vulnerable (VU) plant. No chloroplast (cp) genome information is currently available for Q. bawanglingensis, which would be essential for the establishment of guidelines for its conservation and breeding. In the present study, the cp genome of Q. bawanglingensis was sequenced and assembled into double-stranded circular DNA with a length of 161,394 bp. Two inverted repeats (IRs) with a total of 51,730 bp were identified, and the rest of the sequence was separated into two single-copy regions, namely, a large single-copy (LSC) region (90,628 bp) and a small single-copy (SSC) region (19,036 bp). The genome of Q. bawanglingensis contains 134 genes (86 protein-coding genes, 40 tRNAs and eight rRNAs). More forward (29) than inverted long repeats (21) are distributed in the cp genome. -
The First Chloroplast Genome Sequence of Boswellia Sacra, a Resin-Producing Plant in Oman
RESEARCH ARTICLE The First Chloroplast Genome Sequence of Boswellia sacra, a Resin-Producing Plant in Oman Abdul Latif Khan1, Ahmed Al-Harrasi1*, Sajjad Asaf2, Chang Eon Park2, Gun-Seok Park2, Abdur Rahim Khan2, In-Jung Lee2, Ahmed Al-Rawahi1, Jae-Ho Shin2* 1 UoN Chair of Oman's Medicinal Plants & Marine Natural Products, University of Nizwa, Nizwa, Oman, 2 School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea a1111111111 * [email protected] (AAH); [email protected] (JHS) a1111111111 a1111111111 a1111111111 Abstract a1111111111 Boswellia sacra (Burseraceae), a keystone endemic species, is famous for the production of fragrant oleo-gum resin. However, the genetic make-up especially the genomic informa- tion about chloroplast is still unknown. Here, we described for the first time the chloroplast OPEN ACCESS (cp) genome of B. sacra. The complete cp sequence revealed a circular genome of 160,543 Citation: Khan AL, Al-Harrasi A, Asaf S, Park CE, bp size with 37.61% GC content. The cp genome is a typical quadripartite chloroplast struc- Park G-S, Khan AR, et al. (2017) The First ture with inverted repeats (IRs 26,763 bp) separated by small single copy (SSC; 18,962 bp) Chloroplast Genome Sequence of Boswellia sacra, and large single copy (LSC; 88,055 bp) regions. De novo assembly and annotation showed a Resin-Producing Plant in Oman. PLoS ONE 12 the presence of 114 unique genes with 83 protein-coding regions. The phylogenetic analysis (1): e0169794. doi:10.1371/journal.pone.0169794 revealed that the B. sacra cp genome is closely related to the cp genome of Azadirachta Editor: Xiu-Qing Li, Agriculture and Agri-Food indica and Citrus sinensis, while most of the syntenic differences were found in the non-cod- Canada, CANADA ing regions. -
Quercus ×Coutinhoi Samp. Discovered in Australia Charlie Buttigieg
XXX International Oaks The Journal of the International Oak Society …the hybrid oak that time forgot, oak-rod baskets, pros and cons of grafting… Issue No. 25/ 2014 / ISSN 1941-2061 1 International Oaks The Journal of the International Oak Society … the hybrid oak that time forgot, oak-rod baskets, pros and cons of grafting… Issue No. 25/ 2014 / ISSN 1941-2061 International Oak Society Officers and Board of Directors 2012-2015 Officers President Béatrice Chassé (France) Vice-President Charles Snyers d’Attenhoven (Belgium) Secretary Gert Fortgens (The Netherlands) Treasurer James E. Hitz (USA) Board of Directors Editorial Committee Membership Director Chairman Emily Griswold (USA) Béatrice Chassé Tour Director Members Shaun Haddock (France) Roderick Cameron International Oaks Allen Coombes Editor Béatrice Chassé Shaun Haddock Co-Editor Allen Coombes (Mexico) Eike Jablonski (Luxemburg) Oak News & Notes Ryan Russell Editor Ryan Russell (USA) Charles Snyers d’Attenhoven International Editor Roderick Cameron (Uruguay) Website Administrator Charles Snyers d’Attenhoven For contributions to International Oaks contact Béatrice Chassé [email protected] or [email protected] 0033553621353 Les Pouyouleix 24800 St.-Jory-de-Chalais France Author’s guidelines for submissions can be found at http://www.internationaloaksociety.org/content/author-guidelines-journal-ios © 2014 International Oak Society Text, figures, and photographs © of individual authors and photographers. Graphic design: Marie-Paule Thuaud / www.lecentrecreatifducoin.com Photos. Cover: Charles Snyers d’Attenhoven (Quercus macrocalyx Hickel & A. Camus); p. 6: Charles Snyers d’Attenhoven (Q. oxyodon Miq.); p. 7: Béatrice Chassé (Q. acerifolia (E.J. Palmer) Stoynoff & W. J. Hess); p. 9: Eike Jablonski (Q. ithaburensis subsp. -
A Trip to Study Oaks and Conifers in a Californian Landscape with the International Oak Society
A Trip to Study Oaks and Conifers in a Californian Landscape with the International Oak Society Harry Baldwin and Thomas Fry - 2018 Table of Contents Acknowledgments ....................................................................................................................................................... 3 Introduction .................................................................................................................................................................. 3 Aims and Objectives: .................................................................................................................................................. 4 How to achieve set objectives: ............................................................................................................................................. 4 Sharing knowledge of experience gained: ....................................................................................................................... 4 Map of Places Visited: ................................................................................................................................................. 5 Itinerary .......................................................................................................................................................................... 6 Background to Oaks .................................................................................................................................................... 8 Cosumnes River Preserve ........................................................................................................................................ -
Key to Leaves of Eastern Native Oaks
FHTET-2003-01 January 2003 Front Cover: Clockwise from top left: white oak (Q. alba) acorns; willow oak (Q. phellos) leaves and acorns; Georgia oak (Q. georgiana) leaf; chinkapin oak (Q. muehlenbergii) acorns; scarlet oak (Q. coccinea) leaf; Texas live oak (Q. fusiformis) acorns; runner oak (Q. pumila) leaves and acorns; background bur oak (Q. macrocarpa) bark. (Design, D. Binion) Back Cover: Swamp chestnut oak (Q. michauxii) leaves and acorns. (Design, D. Binion) FOREST HEALTH TECHNOLOGY ENTERPRISE TEAM TECHNOLOGY TRANSFER Oak Identification Field Guide to Native Oak Species of Eastern North America John Stein and Denise Binion Forest Health Technology Enterprise Team USDA Forest Service 180 Canfield St., Morgantown, WV 26505 Robert Acciavatti Forest Health Protection Northeastern Area State and Private Forestry USDA Forest Service 180 Canfield St., Morgantown, WV 26505 United States Forest FHTET-2003-01 Department of Service January 2003 Agriculture NORTH AMERICA 100th Meridian ii iii ACKNOWLEDGMENTS The authors wish to thank all those who helped with this publication. We are grateful for permission to use the drawings illustrated by John K. Myers, Flagstaff, AZ, published in the Flora of North America, North of Mexico, vol. 3 (Jensen 1997). We thank Drs. Cynthia Huebner and Jim Colbert, U.S. Forest Service, Northeastern Research Station, Disturbance Ecology and Management of Oak-Dominated Forests, Morgantown, WV; Dr. Martin MacKenzie, U.S. Forest Service, Northeastern Area State and Private Forestry, Forest Health Protection, Morgantown, WV; Dr. Steven L. Stephenson, Department of Biology, Fairmont State College, Fairmont, WV; Dr. Donna Ford-Werntz, Eberly College of Arts and Sciences, West Virginia University, Morgantown, WV; Dr. -
Flora of the Carolinas, Virginia, and Georgia, Working Draft of 17 March 2004 -- BIBLIOGRAPHY
Flora of the Carolinas, Virginia, and Georgia, Working Draft of 17 March 2004 -- BIBLIOGRAPHY BIBLIOGRAPHY Ackerfield, J., and J. Wen. 2002. A morphometric analysis of Hedera L. (the ivy genus, Araliaceae) and its taxonomic implications. Adansonia 24: 197-212. Adams, P. 1961. Observations on the Sagittaria subulata complex. Rhodora 63: 247-265. Adams, R.M. II, and W.J. Dress. 1982. Nodding Lilium species of eastern North America (Liliaceae). Baileya 21: 165-188. Adams, R.P. 1986. Geographic variation in Juniperus silicicola and J. virginiana of the Southeastern United States: multivariant analyses of morphology and terpenoids. Taxon 35: 31-75. ------. 1995. Revisionary study of Caribbean species of Juniperus (Cupressaceae). Phytologia 78: 134-150. ------, and T. Demeke. 1993. Systematic relationships in Juniperus based on random amplified polymorphic DNAs (RAPDs). Taxon 42: 553-571. Adams, W.P. 1957. A revision of the genus Ascyrum (Hypericaceae). Rhodora 59: 73-95. ------. 1962. Studies in the Guttiferae. I. A synopsis of Hypericum section Myriandra. Contr. Gray Herbarium Harv. 182: 1-51. ------, and N.K.B. Robson. 1961. A re-evaluation of the generic status of Ascyrum and Crookea (Guttiferae). Rhodora 63: 10-16. Adams, W.P. 1973. Clusiaceae of the southeastern United States. J. Elisha Mitchell Sci. Soc. 89: 62-71. Adler, L. 1999. Polygonum perfoliatum (mile-a-minute weed). Chinquapin 7: 4. Aedo, C., J.J. Aldasoro, and C. Navarro. 1998. Taxonomic revision of Geranium sections Batrachioidea and Divaricata (Geraniaceae). Ann. Missouri Bot. Gard. 85: 594-630. Affolter, J.M. 1985. A monograph of the genus Lilaeopsis (Umbelliferae). Systematic Bot. Monographs 6. Ahles, H.E., and A.E. -
Quercus Drymeja Unger and Q. Mediterranea Unger
Review of Palaeobotany and Palynology 241 (2017) 98–128 Contents lists available at ScienceDirect Review of Palaeobotany and Palynology journal homepage: www.elsevier.com/locate/revpalbo Taxonomy and palaeoecology of two widespread western Eurasian Neogene sclerophyllous oak species: Quercus drymeja Unger and Q. mediterranea Unger Thomas Denk a,⁎, Dimitrios Velitzelos b,TuncayH.Günerc, Johannes M. Bouchal a,d, Friðgeir Grímsson d,GuidoW.Grimmd,e a Swedish Museum of Natural History, Department of Palaeobiology, Box 50007, 10405 Stockholm, Sweden b National and Kapodistrian University of Athens, Faculty of Geology and Geoenvironment, Department of Historical Geology and Paleontology, Panepistimiopolis, Athens 15784, Greece c Istanbul University, Faculty of Forestry, Department of Forest Botany, 34473 Bahceköy, Istanbul, Turkey d University of Vienna, Department of Palaeontology, 1090 Vienna, Austria e Unaffiliated, 45100 Orléans, France article info abstract Article history: Sclerophyllous oaks (genus Quercus) play important roles in Neogene ecosystems of south-western Eurasia. Received 31 May 2016 Modern analogues (‘nearest living relatives’) for these oaks have been sought among five of six infrageneric lin- Accepted 30 January 2017 eages of Quercus, distributed across the entire Northern Hemisphere. A revision of leaf fossils from lower Miocene Available online 10 February 2017 to Pliocene deposits suggests that morphotypes of the Quercus drymeja complex are very similar to a number of extant Himalayan, East Asian, and Southeast Asian species of Quercus Group Ilex and may indicate subtropical, Keywords: Quercus Group Ilex relatively humid conditions. Quercus mediterranea comprises leaf morphotypes that are encountered in modern Plant fossil Mediterranean species of Quercus Group Ilex, but also in Himalayan and East Asian members of this group indi- Modern analogue cating fully humid or summer-wet conditions. -
Redalyc.Tree and Tree-Like Species of Mexico: Apocynaceae, Cactaceae
Revista Mexicana de Biodiversidad ISSN: 1870-3453 [email protected] Universidad Nacional Autónoma de México México Ricker, Martin; Valencia-Avalos, Susana; Hernández, Héctor M.; Gómez-Hinostrosa, Carlos; Martínez-Salas, Esteban M.; Alvarado-Cárdenas, Leonardo O.; Wallnöfer, Bruno; Ramos, Clara H.; Mendoza, Pilar E. Tree and tree-like species of Mexico: Apocynaceae, Cactaceae, Ebenaceae, Fagaceae, and Sapotaceae Revista Mexicana de Biodiversidad, vol. 87, núm. 4, diciembre, 2016, pp. 1189-1202 Universidad Nacional Autónoma de México Distrito Federal, México Available in: http://www.redalyc.org/articulo.oa?id=42548632003 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Available online at www.sciencedirect.com Revista Mexicana de Biodiversidad Revista Mexicana de Biodiversidad 87 (2016) 1189–1202 www.ib.unam.mx/revista/ Taxonomy and systematics Tree and tree-like species of Mexico: Apocynaceae, Cactaceae, Ebenaceae, Fagaceae, and Sapotaceae Especies arbóreas y arborescentes de México: Apocynaceae, Cactaceae, Ebenaceae, Fagaceae y Sapotaceae a,∗ b a a Martin Ricker , Susana Valencia-Avalos , Héctor M. Hernández , Carlos Gómez-Hinostrosa , a b c Esteban M. Martínez-Salas , Leonardo O. Alvarado-Cárdenas , Bruno Wallnöfer , a a Clara H. Ramos , Pilar E. Mendoza a Herbario Nacional de México (MEXU), Departamento -
Estudio Preliminar Del Género Quercus (Fagaceae) En Tamaulipas, México Preliminary Study of the Genus Quercus (Fagaceae) in Tamaulipas, Mexico
120: 59-111 Julio 2017 Artículo de investigación Estudio preliminar del género Quercus (Fagaceae) en Tamaulipas, México Preliminary study of the genus Quercus (Fagaceae) in Tamaulipas, Mexico Erika Pérez Mojica1 , Susana Valencia-A.1,2 RESUMEN: 1 Universidad Nacional Autónoma de Antecedentes y Objetivos: El estado de Tamaulipas se ubica en el noreste de México, región consi- México, Herbario Nacional de la Fa- derada con alta riqueza de encinos, pero carente de inventarios y de herramientas para identificar las cultad de Ciencias (FCME), Circuito ex- terior s.n., Ciudad Universitaria, 04510 especies de Quercus. El objetivo de este trabajo es conocer la riqueza específica del géneroQuercus en Cd. Mx., México. Tamaulipas y proporcionar herramientas para su identificación. 2 Autor para la correspondencia: Métodos: Se revisaron los ejemplares de Quercus depositados en los herbarios CHAP, ENCB, FCME, [email protected] HUAP, INEGI, INIF y MEXU; así como los ejemplares escaneados del género Quercus de Tamaulipas de los herbarios MO y K disponibles en la página electrónica de Trópicos y los tipos de las especies en JSTOR Global Plants. Paralelamente se revisaron las publicaciones de Tamaulipas, particularmente las Citar como: listas florísticas que incluyen el géneroQuercus , resultando en una lista preliminar de especies colectadas Pérez Mojica, E. y S. Valencia-A. 2017. Es- tudio preliminar del género Quercus (Fa- y reportadas. La revisión de ejemplares y el reconocimiento de los sinónimos permitió depurar la lista de gaceae) en Tamaulipas, México. Acta Bo- especies. Con base en la información anterior, se prepararon las descripciones de las especies de encinos. tanica Mexicana 120: 59-111. -
Arkansas Endemic Biota: an Update with Additions and Deletions H
Journal of the Arkansas Academy of Science Volume 62 Article 14 2008 Arkansas Endemic Biota: An Update with Additions and Deletions H. Robison Southern Arkansas University, [email protected] C. McAllister C. Carlton Louisiana State University G. Tucker FTN Associates, Ltd. Follow this and additional works at: http://scholarworks.uark.edu/jaas Part of the Botany Commons Recommended Citation Robison, H.; McAllister, C.; Carlton, C.; and Tucker, G. (2008) "Arkansas Endemic Biota: An Update with Additions and Deletions," Journal of the Arkansas Academy of Science: Vol. 62 , Article 14. Available at: http://scholarworks.uark.edu/jaas/vol62/iss1/14 This article is available for use under the Creative Commons license: Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0). Users are able to read, download, copy, print, distribute, search, link to the full texts of these articles, or use them for any other lawful purpose, without asking prior permission from the publisher or the author. This Article is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Journal of the Arkansas Academy of Science by an authorized editor of ScholarWorks@UARK. For more information, please contact [email protected], [email protected]. Journal of the Arkansas Academy of Science, Vol. 62 [2008], Art. 14 The Arkansas Endemic Biota: An Update with Additions and Deletions H. Robison1, C. McAllister2, C. Carlton3, and G. Tucker4 1Department of Biological Sciences, Southern Arkansas University, Magnolia, AR 71754-9354 2RapidWrite, 102 Brown Street, Hot Springs National Park, AR 71913 3Department of Entomology, Louisiana State University, Baton Rouge, LA 70803-1710 4FTN Associates, Ltd., 3 Innwood Circle, Suite 220, Little Rock, AR 72211 1Correspondence: [email protected] Abstract Pringle and Witsell (2005) described this new species of rose-gentian from Saline County glades. -
An Updated Infrageneric Classification of the North American Oaks
Article An Updated Infrageneric Classification of the North American Oaks (Quercus Subgenus Quercus): Review of the Contribution of Phylogenomic Data to Biogeography and Species Diversity Paul S. Manos 1,* and Andrew L. Hipp 2 1 Department of Biology, Duke University, 330 Bio Sci Bldg, Durham, NC 27708, USA 2 The Morton Arboretum, Center for Tree Science, 4100 Illinois 53, Lisle, IL 60532, USA; [email protected] * Correspondence: [email protected] Abstract: The oak flora of North America north of Mexico is both phylogenetically diverse and species-rich, including 92 species placed in five sections of subgenus Quercus, the oak clade centered on the Americas. Despite phylogenetic and taxonomic progress on the genus over the past 45 years, classification of species at the subsectional level remains unchanged since the early treatments by WL Trelease, AA Camus, and CH Muller. In recent work, we used a RAD-seq based phylogeny including 250 species sampled from throughout the Americas and Eurasia to reconstruct the timing and biogeography of the North American oak radiation. This work demonstrates that the North American oak flora comprises mostly regional species radiations with limited phylogenetic affinities to Mexican clades, and two sister group connections to Eurasia. Using this framework, we describe the regional patterns of oak diversity within North America and formally classify 62 species into nine major North American subsections within sections Lobatae (the red oaks) and Quercus (the Citation: Manos, P.S.; Hipp, A.L. An Quercus Updated Infrageneric Classification white oaks), the two largest sections of subgenus . We also distill emerging evolutionary and of the North American Oaks (Quercus biogeographic patterns based on the impact of phylogenomic data on the systematics of multiple Subgenus Quercus): Review of the species complexes and instances of hybridization. -
NPJ Fall 2001.Final
Palms of Northeastern Mexico CARL MAX SCHOENFELD 126 FALL 2002 FALL Photo by Carl Max Schoenfeld The type location for Brahea berlandieri. NATIVE PLANTS JOURNAL ABSTRACT eastern foot in the hot and humid subtropical low- lands while to the west lie Nine species of palms native to north- the cool and dry highlands. eastern Mexico are successfully grown at This topographic formation Yucca Do Nursery. These palms are easy is the perfect recipe for site- to propagate, surprisingly cold hardy, specific endemic species to and occupy biologically and geologically thrive and survive from intriguing sites. Brief descriptions of ancient times to the pres- each species and general propagation ent. techniques are provided. Politically, northeast- KEY WORDS: Brahea, Chamaedorea, ern Mexico is delineated Sabal, Arecaceae, seed propagation, cold by the states of Coahuila, hardiness Nuevo Leon, Tamaulipas, San Luis Potosi, and NOMENCLATURE: MOBOT (2002) Hidalgo. In these states exico ranks third in the world the following genera of in biological diversity palms can be found: (Mittermeier 1988) despite the Brahea Mart. ex Endl., M Chamaedorea Willd., and fact it is only the fourteenth largest coun- try in the world, having a land area about Sabal Adanson ex one-fourth that of the US. Mexico boasts Guersent. Continuing to about 30,000 species of plants with well narrow the scope, these 3 over 21,000 species of flowering plants. genera will be the focus of Its contribution cannot be equaled when further discussion. food crops are added to the equation, To me, the excitement Photo by Carl Max Schoenfield since Mexico is the only country where an beauty of Mexico is Figure 1 • Brahea bella.