Biology of Plant Rhabdoviruses*
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Common COVID-19 Myths and Misinformation
Common COVID-19 Myths and Misinformation Myth: The side effects of Myth: The COVID-19 Myth: If I’ve already had the COVID-19 vaccine are vaccine can affect COVID-19, I don’t need a dangerous. women’s fertility. vaccine. Myth: Researchers rushed the development of the Myth: Getting the COVID- Myth: The COVID-19 COVID-19 vaccine, so its 19 vaccine gives you vaccine can affect effectiveness and safety COVID-19. women’s fertility. cannot be trusted. Myth: The COVID-19 vaccine enters your cells and changes your DNA. Information gathered from the following website: https://www.hopkinsmedicine.org/health/conditions-and-diseases/coronavirus/covid-19-vaccines-myth-versus-fact https://www.muhealth.org/our-stories/covid-19-vaccine-myths-vs-facts FACT: People who have gotten sick with COVID-19 may still benefit from getting vaccinated. Due to the severe health risks associated with COVID-19 and the fact that re-infection with COVID-19 is possible, people may be advised to get a COVID-19 vaccine If I’ve already had even if they have been sick with COVID-19 before. There is not enough information currently available to COVID-19, I don’t say if or for how long people are protected from getting COVID-19 after they have had it (natural need a vaccine. immunity). Early evidence suggests natural immunity from COVID-19 may not last very long, but more studies are needed to better understand this. Several subjects in the Pfizer trial who were previously infected got vaccinated without ill effects. Some scientists believe the vaccine offers better protection for coronavirus than natural infection. -
Comparative Analysis, Distribution, and Characterization of Microsatellites in Orf Virus Genome
www.nature.com/scientificreports OPEN Comparative analysis, distribution, and characterization of microsatellites in Orf virus genome Basanta Pravas Sahu1, Prativa Majee 1, Ravi Raj Singh1, Anjan Sahoo2 & Debasis Nayak 1* Genome-wide in-silico identifcation of microsatellites or simple sequence repeats (SSRs) in the Orf virus (ORFV), the causative agent of contagious ecthyma has been carried out to investigate the type, distribution and its potential role in the genome evolution. We have investigated eleven ORFV strains, which resulted in the presence of 1,036–1,181 microsatellites per strain. The further screening revealed the presence of 83–107 compound SSRs (cSSRs) per genome. Our analysis indicates the dinucleotide (76.9%) repeats to be the most abundant, followed by trinucleotide (17.7%), mononucleotide (4.9%), tetranucleotide (0.4%) and hexanucleotide (0.2%) repeats. The Relative Abundance (RA) and Relative Density (RD) of these SSRs varied between 7.6–8.4 and 53.0–59.5 bp/ kb, respectively. While in the case of cSSRs, the RA and RD ranged from 0.6–0.8 and 12.1–17.0 bp/kb, respectively. Regression analysis of all parameters like the incident of SSRs, RA, and RD signifcantly correlated with the GC content. But in a case of genome size, except incident SSRs, all other parameters were non-signifcantly correlated. Nearly all cSSRs were composed of two microsatellites, which showed no biasedness to a particular motif. Motif duplication pattern, such as, (C)-x-(C), (TG)- x-(TG), (AT)-x-(AT), (TC)- x-(TC) and self-complementary motifs, such as (GC)-x-(CG), (TC)-x-(AG), (GT)-x-(CA) and (TC)-x-(AG) were observed in the cSSRs. -
The Occurrence of the Viruses in Narcissus L
Journal of Horticultural Research 2016, vol. 24(2): 19-24 DOI: 10.1515/johr-2016-0016 _______________________________________________________________________________________________________ THE FREQUENCY OF VIRAL INFECTIONS ON TWO NARCISSUS PLANTATIONS IN CENTRAL POLAND Short communication Dariusz SOCHACKI1*, Ewa CHOJNOWSKA2 1Warsaw University of Life Sciences – SGGW, Nowoursynowska 166, 02-767 Warsaw, Poland 2Research Institute of Horticulture, Konstytucji 3 Maja 1/3, 96-100 Skierniewice Received: November 2016; Accepted: December 2016 ABSTRACT Viral diseases in narcissus can drastically affect yields and quality of narcissus bulbs and flowers, leading even to a total crop loss. To test the frequency of viral infections in production fields in Central Poland, samples were collected over three years from two cultivars and two plantations, and tested for the presence of Arabis mosaic (ArMV), Cucumber mosaic (CMV), Narcissus latent (NLV), Narcissus mosaic (NMV) and the potyvirus group using the Enzyme Linked ImmunoSorbent Assay. Potyviruses, NLV and NMV were detected in almost all leaf samples in both cultivars, in all three years of testing. Other viruses were detected in a limited number of samples. In most cases mixed infections were present. Tests on bulbs have shown the presence of potyviruses and NMV, with the higher number of positives in cultivar ‘Carlton’. In addition, for most viruses an increase in their detectability was observed on both plantations in subse- quent seasons. Key words: ELISA, flower bulbs, negative selection, viral disease INTRODUCTION (NMV). Many of the most important viruses infect- ing narcissus belongs to the potyvirus group. Viral diseases can drastically affect yield as Asjes (1996) reported that degeneration of nar- well as quality of narcissus bulbs and flowers, some- cissus plants caused by viruses may decrease bulb times resulting in a total crop loss. -
Update on Approved and Candidate COVID-19 Vaccines in the EU
Update on approved and candidate COVID-19 vaccines in the EU Dr. Marco Cavaleri Head of Biological Health Threats and Vaccines Strategy, EMA An agency of the European Union Outline 1 EMA response to COVID-19 pandemic - milestones 2 COVID-19 vaccines approved in the EU 3 Benefits and risks of COVID-19 vaccines 4 Real world evidence on effectiveness 5 Studies in children 6 Vaccines under review by EMA 7 Adapting COVID-19 vaccines to variants 8 Additional information Classified as public by the European Medicines Agency EMA RESPONSE TO COVID-19 PANDEMIC Milestones in the fight against the pandemic Scientific & regulatory Rapid development & Transparency & mobilisation evaluation outreach Approval: Comirnaty, COVID-19 vaccine Moderna, COVID-19 vaccine AstraZeneca, COVID-19 vaccine Janssen Accelerated development & evaluation procedures WHO declares pandemic COVID-19 Experts’ Task Force Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec 2020 2021 1 Classified as public by the European Medicines Agency COVID-19 vaccines approved in the EU 4 vaccines authorised in the EU • Comirnaty and Moderna vaccines contain a molecule called messenger RNA (mRNA) with instructions for producing the spike protein from SARS-CoV-2, the virus that causes COVID-19 • The AstraZeneca and Janssen vaccine uses a non-replicating adenovirus as a carrier that has been modified to produce the spike protein from SARS-CoV-2. • The vaccines do not contain the SARS-CoV-2 virus causing COVID-19 itself and cannot cause the disease. Comirnaty COVID-19 Vaccine COVID-19 Vaccine COVID-19 Vaccine (BioNTech/Pfizer) Moderna AstraZeneca Janssen 21 Dec 6 Jan 29 Jan 11 Mar 2 Classified as public by the European Medicines Agency BENEFITS AND RISKS Efficacy of COVID-19 vaccines in trials All COVID-19 vaccines approved in the EU have a positive benefit-risk balance in prevention of COVID-19 disease. -
Comparison of Plant‐Adapted Rhabdovirus Protein Localization and Interactions
University of Kentucky UKnowledge University of Kentucky Doctoral Dissertations Graduate School 2011 COMPARISON OF PLANT‐ADAPTED RHABDOVIRUS PROTEIN LOCALIZATION AND INTERACTIONS Kathleen Marie Martin University of Kentucky, [email protected] Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Martin, Kathleen Marie, "COMPARISON OF PLANT‐ADAPTED RHABDOVIRUS PROTEIN LOCALIZATION AND INTERACTIONS" (2011). University of Kentucky Doctoral Dissertations. 172. https://uknowledge.uky.edu/gradschool_diss/172 This Dissertation is brought to you for free and open access by the Graduate School at UKnowledge. It has been accepted for inclusion in University of Kentucky Doctoral Dissertations by an authorized administrator of UKnowledge. For more information, please contact [email protected]. ABSTRACT OF DISSERTATION Kathleen Marie Martin The Graduate School University of Kentucky 2011 COMPARISON OF PLANT‐ADAPTED RHABDOVIRUS PROTEIN LOCALIZATION AND INTERACTIONS ABSTRACT OF DISSERTATION A dissertation submitted in partial fulfillment of the requirements for the Degree of Doctor of Philosophy in the College of Agriculture at the University of Kentucky By Kathleen Marie Martin Lexington, Kentucky Director: Dr. Michael M Goodin, Associate Professor of Plant Pathology Lexington, Kentucky 2011 Copyright © Kathleen Marie Martin 2011 ABSTRACT OF DISSERTATION COMPARISON OF PLANT‐ADAPTED RHABDOVIRUS PROTEIN LOCALIZATION AND INTERACTIONS Sonchus yellow net virus (SYNV), Potato yellow dwarf virus (PYDV) and Lettuce Necrotic yellows virus (LNYV) are members of the Rhabdoviridae family that infect plants. SYNV and PYDV are Nucleorhabdoviruses that replicate in the nuclei of infected cells and LNYV is a Cytorhabdovirus that replicates in the cytoplasm. LNYV and SYNV share a similar genome organization with a gene order of Nucleoprotein (N), Phosphoprotein (P), putative movement protein (Mv), Matrix protein (M), Glycoprotein (G) and Polymerase protein (L). -
Statements Contained in This Release As the Result of New Information Or Future Events Or Developments
Pfizer and BioNTech Provide Update on Booster Program in Light of the Delta-Variant NEW YORK and MAINZ, GERMANY, July 8, 2021 — As part of Pfizer’s and BioNTech’s continued efforts to stay ahead of the virus causing COVID-19 and circulating mutations, the companies are providing an update on their comprehensive booster strategy. Pfizer and BioNTech have seen encouraging data in the ongoing booster trial of a third dose of the current BNT162b2 vaccine. Initial data from the study demonstrate that a booster dose given 6 months after the second dose has a consistent tolerability profile while eliciting high neutralization titers against the wild type and the Beta variant, which are 5 to 10 times higher than after two primary doses. The companies expect to publish more definitive data soon as well as in a peer-reviewed journal and plan to submit the data to the FDA, EMA and other regulatory authorities in the coming weeks. In addition, data from a recent Nature paper demonstrate that immune sera obtained shortly after dose 2 of the primary two dose series of BNT162b2 have strong neutralization titers against the Delta variant (B.1.617.2 lineage) in laboratory tests. The companies anticipate that a third dose will boost those antibody titers even higher, similar to how the third dose performs for the Beta variant (B.1.351). Pfizer and BioNTech are conducting preclinical and clinical tests to confirm this hypothesis. While Pfizer and BioNTech believe a third dose of BNT162b2 has the potential to preserve the highest levels of protective efficacy against all currently known variants including Delta, the companies are remaining vigilant and are developing an updated version of the Pfizer-BioNTech COVID-19 vaccine that targets the full spike protein of the Delta variant. -
Cellular and Molecular Aspects of Rhabdovirus Interactions with Insect and Plant Hosts∗
ANRV363-EN54-23 ARI 23 October 2008 14:4 Cellular and Molecular Aspects of Rhabdovirus Interactions with Insect and Plant Hosts∗ El-Desouky Ammar,1 Chi-Wei Tsai,3 Anna E. Whitfield,4 Margaret G. Redinbaugh,2 and Saskia A. Hogenhout5 1Department of Entomology, 2USDA-ARS, Department of Plant Pathology, The Ohio State University-OARDC, Wooster, Ohio 44691; email: [email protected], [email protected] 3Department of Environmental Science, Policy, and Management, University of California, Berkeley, California 94720; email: [email protected] 4Department of Plant Pathology, Kansas State University, Manhattan, Kansas 66506; email: [email protected] 5Department of Disease and Stress Biology, The John Innes Centre, Norwich, NR4 7UH, United Kingdom; email: [email protected] Annu. Rev. Entomol. 2009. 54:447–68 Key Words First published online as a Review in Advance on Cytorhabdovirus, Nucleorhabdovirus, insect vectors, virus-host September 15, 2008 interactions, transmission barriers, propagative transmission The Annual Review of Entomology is online at ento.annualreviews.org Abstract This article’s doi: The rhabdoviruses form a large family (Rhabdoviridae) whose host ranges 10.1146/annurev.ento.54.110807.090454 include humans, other vertebrates, invertebrates, and plants. There are Copyright c 2009 by Annual Reviews. at least 90 plant-infecting rhabdoviruses, several of which are economi- by U.S. Department of Agriculture on 12/31/08. For personal use only. All rights reserved cally important pathogens of various crops. All definitive plant-infecting 0066-4170/09/0107-0447$20.00 and many vertebrate-infecting rhabdoviruses are persistently transmit- Annu. Rev. Entomol. 2009.54:447-468. -
Synthesis of Potato Virus X Rnas by Membrane- Containing Extracts
JOURNAL OF VIROLOGY, July 1996, p. 4795–4799 Vol. 70, No. 7 0022-538X/96/$04.0010 Copyright q 1996, American Society for Microbiology Synthesis of Potato Virus X RNAs by Membrane- Containing Extracts SERGEY V. DORONIN AND CYNTHIA HEMENWAY* Department of Biochemistry, North Carolina State University, Raleigh, North Carolina 27695-7622 Received 16 October 1995/Accepted 30 March 1996 Membrane-containing extracts isolated from tobacco plants infected with the plus-strand RNA virus, potato virus X (PVX), supported synthesis of four major, high-molecular-weight PVX RNA products (R1 to R4). Nuclease digestion and hybridization studies indicated that R1 and R2 are a mixture of partially single- stranded replicative intermediates and double-stranded replicative forms. R3 and R4 are double-stranded products containing sequences typical of the two major PVX subgenomic RNAs. The newly synthesized RNAs were demonstrated to have predominantly plus-strand polarity. Synthesis of these products was remarkably stable in the presence of ionic detergents. Potato virus X (PVX), the type member of the Potexvirus tracts were derived from Nicotiana tabacum leaves at 7 days genus, is a flexuous rod-shaped particle containing a single, postinoculation by a procedure similar to that described by genomic RNA of 6.4 kb that is capped and polyadenylated (21, Lurie and Hendrix (15). Inoculated and upper leaves (50 g) 27). Of the five open reading frames (ORFs), the first encodes were homogenized in 150 ml of buffer I (50 mM Tris-HCl [pH a 165-kDa protein (P1) that has homology to other known 7.5], 250 mM sucrose, 5 mM MgCl2, 1 mM EDTA, 10 mM RNA-dependent RNA polymerase (RdRp) proteins (23). -
Covid-19 Messenger Rna Vaccine
COVID-19 MESSENGER RNA VACCINE A Piece of the Coronavirus The SARS-CoV-2 virus is studded with proteins that it uses to enter human cells. These so-called spike proteins make a tempting target for potential vaccines and treatments. Image of Coronavirus and spike proteins. Spike CORONAVIRUS protein Spikes gene Like the Pfizer vaccine, Moderna’s vaccine is based on the virus’s genetic instructions for building the spike protein. mRNA Inside an Oily Shell The vaccine uses messenger RNA, genetic material that our cells read to make proteins. The molecule — called mRNA for short — is fragile and would be chopped to pieces by our natural enzymes if it were injected directly into the body. To protect their vaccine, Pfizer and BioNTech wrap mRNA in oily bubbles made of lipid nanoparticles. Lipid nanoparticles surrounding mRNA Entering a Cell After injection, the vaccine particles bump into cells and fuse to them, releasing mRNA. The cell’s molecules read its sequence and build spike proteins. The mRNA from the vaccine is eventually destroyed by the cell, leaving no permanent trace. Vaccine Particle Translating mRNA fuses into Spike Spike Protien, which beaks it into Protein fragmentsmRNA and then destroyed by the Translatingcell nucleus. mRNA Spike Three spike Proteins Combine Cell Nucleus Spike Proteins and Fragments Protruding Displaying Protein Fragments Spikes Some of the spike proteins form spikes that migrate to the surface of the cell and stick out their tips. The vaccinated cells also break up some of the proteins into fragments, which they present on their surface. These protruding spikes and spike protein fragments can then be recognized by the immune system. -
Incipient Non-Adaptive Radiation by Founder Effect? Oliarus Polyphemus Fennah, 1973 – a Subterranean Model Case
Incipient non-adaptive radiation by founder effect? Oliarus polyphemus Fennah, 1973 – a subterranean model case. (Hemiptera: Fulgoromorpha: Cixiidae) Dissertation zur Erlangung des akademischen Grades doctor rerum naturalium (Dr. rer. nat.) im Fach Biologie eingereicht an der Mathematisch-Naturwissenschaftlichen Fakultät I der Humboldt-Universität zu Berlin von Diplom-Biologe Andreas Wessel geb. 30.11.1973 in Berlin Präsident der Humboldt-Universität zu Berlin Prof. Dr. Christoph Markschies Dekan der Mathematisch-Naturwissenschaftlichen Fakultät I Prof. Dr. Lutz-Helmut Schön Gutachter/innen: 1. Prof. Dr. Hannelore Hoch 2. Prof. Dr. Dr. h.c. mult. Günter Tembrock 3. Prof. Dr. Kenneth Y. Kaneshiro Tag der mündlichen Prüfung: 20. Februar 2009 Incipient non-adaptive radiation by founder effect? Oliarus polyphemus Fennah, 1973 – a subterranean model case. (Hemiptera: Fulgoromorpha: Cixiidae) Doctoral Thesis by Andreas Wessel Humboldt University Berlin 2008 Dedicated to Francis G. Howarth, godfather of Hawai'ian cave ecosystems, and to the late Hampton L. Carson, who inspired modern population thinking. Ua mau ke ea o ka aina i ka pono. Zusammenfassung Die vorliegende Arbeit hat sich zum Ziel gesetzt, den Populationskomplex der hawai’ischen Höhlenzikade Oliarus polyphemus als Modellsystem für das Stu- dium schneller Artenbildungsprozesse zu erschließen. Dazu wurde ein theoretischer Rahmen aus Konzepten und daraus abgeleiteten Hypothesen zur Interpretation be- kannter Fakten und Erhebung neuer Daten entwickelt. Im Laufe der Studie wurde zur Erfassung geografischer Muster ein GIS (Geographical Information System) erstellt, das durch Einbeziehung der historischen Geologie eine präzise zeitliche Einordnung von Prozessen der Habitatsukzession erlaubt. Die Muster der biologi- schen Differenzierung der Populationen wurden durch morphometrische, etho- metrische (bioakustische) und molekulargenetische Methoden erfasst. -
Module1: General Concepts
NPTEL – Biotechnology – General Virology Module1: General Concepts Lecture 1: Virus history The history of virology goes back to the late 19th century, when German anatomist Dr Jacob Henle (discoverer of Henle’s loop) hypothesized the existence of infectious agent that were too small to be observed under light microscope. This idea fails to be accepted by the present scientific community in the absence of any direct evidence. At the same time three landmark discoveries came together that formed the founding stone of what we call today as medical science. The first discovery came from Louis Pasture (1822-1895) who gave the spontaneous generation theory from his famous swan-neck flask experiment. The second discovery came from Robert Koch (1843-1910), a student of Jacob Henle, who showed for first time that the anthrax and tuberculosis is caused by a bacillus, and finally Joseph Lister (1827-1912) gave the concept of sterility during the surgery and isolation of new organism. The history of viruses and the field of virology are broadly divided into three phases, namely discovery, early and modern. The discovery phase (1886-1913) In 1879, Adolf Mayer, a German scientist first observed the dark and light spot on infected leaves of tobacco plant and named it tobacco mosaic disease. Although he failed to describe the disease, he showed the infectious nature of the disease after inoculating the juice extract of diseased plant to a healthy one. The next step was taken by a Russian scientist Dimitri Ivanovsky in 1890, who demonstrated that sap of the leaves infected with tobacco mosaic disease retains its infectious property even after its filtration through a Chamberland filter. -
Aptamer Applications in Emerging Viral Diseases
pharmaceuticals Review Aptamer Applications in Emerging Viral Diseases Arne Krüger 1,† , Ana Paula de Jesus Santos 2,†, Vanessa de Sá 2, Henning Ulrich 2,* and Carsten Wrenger 1,* 1 Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo 05508-000-SP, Brazil; [email protected] 2 Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo 05508-900-SP, Brazil; [email protected] (A.P.d.J.S.); [email protected] (V.d.S.) * Correspondence: [email protected] (H.U.); [email protected] (C.W.) † These authors contributed equally to this work. Abstract: Aptamers are single-stranded DNA or RNA molecules which are submitted to a process denominated SELEX. SELEX uses reiterative screening of a random oligonucleotide library to identify high-affinity binders to a chosen target, which may be a peptide, protein, or entire cells or viral particles. Aptamers can rival antibodies in target recognition, and benefit from their non-proteic nature, ease of modification, increased stability, and pharmacokinetic properties. This turns them into ideal candidates for diagnostic as well as therapeutic applications. Here, we review the recent accomplishments in the development of aptamers targeting emerging viral diseases, with emphasis on recent findings of aptamers binding to coronaviruses. We focus on aptamer development for diagnosis, including biosensors, in addition to aptamer modifications for stabilization in body fluids and tissue penetration. Such aptamers are aimed at in vivo diagnosis and treatment, such as quantification of viral load and blocking host cell invasion, virus assembly, or replication, respectively. Although there are currently no in vivo applications of aptamers in combating viral diseases, such Citation: Krüger, A.; de Jesus Santos, strategies are promising for therapy development in the future.