Orchidaceae: Epidendroideae), the Second Species of Danxiaorchis
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Alternative Translation Initiation Codons for the Plastid Maturase Matk: Unraveling the Pseudogene Misconception in the Orchidaceae Michelle M
Barthet et al. BMC Evolutionary Biology (2015) 15:210 DOI 10.1186/s12862-015-0491-1 RESEARCH ARTICLE Open Access Alternative translation initiation codons for the plastid maturase MatK: unraveling the pseudogene misconception in the Orchidaceae Michelle M. Barthet1,2* , Keenan Moukarzel3, Kayla N. Smith1, Jaimin Patel3 and Khidir W. Hilu3 Abstract Background: The plastid maturase MatK has been implicated as a possible model for the evolutionary “missing link” between prokaryotic and eukaryotic splicing machinery. This evolutionary implication has sparked investigations concerning the function of this unusual maturase. Intron targets of MatK activity suggest that this is an essential enzyme for plastid function. The matK gene, however, is described as a pseudogene in many photosynthetic orchid species due to presence of premature stop codons in translations, and its high rate of nucleotide and amino acid substitution. Results: Sequence analysis of the matK gene from orchids identified an out-of-frame alternative AUG initiation codon upstream from the consensus initiation codon used for translation in other angiosperms. We demonstrate translation from the alternative initiation codon generates a conserved MatK reading frame. We confirm that MatK protein is expressed and functions in sample orchids currently described as having a matK pseudogene using immunodetection and reverse-transcription methods. We demonstrate using phylogenetic analysis that this alternative initiation codon emerged de novo within the Orchidaceae, with several reversal events at the basal lineage and deep in orchid history. Conclusion: These findings suggest a novel evolutionary shift for expression of matK in the Orchidaceae and support the function of MatK as a group II intron maturase in the plastid genome of land plants including the orchids. -
Diptera: Psilidae)
EUROPEAN JOURNAL OF ENTOMOLOGYENTOMOLOGY ISSN (online): 1802-8829 Eur. J. Entomol. 113: 393–396, 2016 http://www.eje.cz doi: 10.14411/eje.2016.050 NOTE Infestation of the mycoheterotrophic orchid Yoania japonica by the two-winged fl y, Chyliza vittata (Diptera: Psilidae) KENJI SUETSUGU Department of Biology, Graduate School of Science, Kobe University, 1-1 Rokkodai, Nada-ku, Kobe, 657-8501, Japan; e-mail: [email protected] Key words. Diptera, Psilidae, Chyliza vittata, host plants, mycoheterotrophy, Orchidaceae, Yoania japonica, Gastrodia elata, phytophagous insects, stem-miner Abstract. Chyliza vittata is known to utilize leaves, stems and underground parts of several leafy and leafl ess orchids. Compared to the well-recorded feeding habits of C. vittata in Europe, its feeding habits in Japan are poorly studied. Thus, further records of its host plants and the habits of its larvae in Japan are likely to reveal the similarities and differences in its feeding habits in Europe and Japan. The current study reports C. vittata feeding on the stems of the mycoheterotrophic orchid Yoania japonica in central Japan. This study also showed that in spite of the small size of Yoania its reproductive success is not severely reduced when infested with C. vittata, whereas the robust stems of Gastrodia elata, which is its main host plant in Japan, are thought to be a defence against infestation by C. vittata. INTRODUCTION fl oribunda (Caprifoliaceae; Sugiura & Yamazaki, 2006; Yamaza- The Psilidae is a small family of acalyptrate Diptera in the su- ki & Sugiura, 2008), while C. vittata consumes the leaves, stems perfamily Diopsoidea, which includes about 400 described spe- and underground structures of several orchid genera, including cies (Freidberg & Shatalkin, 2008). -
Phylogeny, Character Evolution and the Systematics of Psilochilus (Triphoreae)
THE PRIMITIVE EPIDENDROIDEAE (ORCHIDACEAE): PHYLOGENY, CHARACTER EVOLUTION AND THE SYSTEMATICS OF PSILOCHILUS (TRIPHOREAE) A Dissertation Presented in Partial Fulfillment of the Requirements for The Degree Doctor of Philosophy in the Graduate School of the Ohio State University By Erik Paul Rothacker, M.Sc. ***** The Ohio State University 2007 Doctoral Dissertation Committee: Approved by Dr. John V. Freudenstein, Adviser Dr. John Wenzel ________________________________ Dr. Andrea Wolfe Adviser Evolution, Ecology and Organismal Biology Graduate Program COPYRIGHT ERIK PAUL ROTHACKER 2007 ABSTRACT Considering the significance of the basal Epidendroideae in understanding patterns of morphological evolution within the subfamily, it is surprising that no fully resolved hypothesis of historical relationships has been presented for these orchids. This is the first study to improve both taxon and character sampling. The phylogenetic study of the basal Epidendroideae consisted of two components, molecular and morphological. A molecular phylogeny using three loci representing each of the plant genomes including gap characters is presented for the basal Epidendroideae. Here we find Neottieae sister to Palmorchis at the base of the Epidendroideae, followed by Triphoreae. Tropidieae and Sobralieae form a clade, however the relationship between these, Nervilieae and the advanced Epidendroids has not been resolved. A morphological matrix of 40 taxa and 30 characters was constructed and a phylogenetic analysis was performed. The results support many of the traditional views of tribal composition, but do not fully resolve relationships among many of the tribes. A robust hypothesis of relationships is presented based on the results of a total evidence analysis using three molecular loci, gap characters and morphology. Palmorchis is placed at the base of the tree, sister to Neottieae, followed successively by Triphoreae sister to Epipogium, then Sobralieae. -
Vegetative Anatomy of Calypsoeae (Orchidaceae) William Louis Stern Florida International University
Eastern Illinois University The Keep Faculty Research & Creative Activity Biological Sciences January 2008 Vegetative anatomy of Calypsoeae (Orchidaceae) William Louis Stern Florida International University Barbara S. Carlsward Eastern Illinois University, [email protected] Follow this and additional works at: http://thekeep.eiu.edu/bio_fac Part of the Biology Commons Recommended Citation Stern, William Louis and Carlsward, Barbara S., "Vegetative anatomy of Calypsoeae (Orchidaceae)" (2008). Faculty Research & Creative Activity. 265. http://thekeep.eiu.edu/bio_fac/265 This Article is brought to you for free and open access by the Biological Sciences at The Keep. It has been accepted for inclusion in Faculty Research & Creative Activity by an authorized administrator of The Keep. For more information, please contact [email protected]. LANKESTERIANA 8(1): 105-112. 2008. VEGETATIVE ANATOMY OF CALYPSOEAE (ORCHIDACEAE) WILLIAM LOUIS STERN1 & BARBARA S. CARLSWARD2,3 1Department of Biological Sciences, Biscayne Bay Campus, MSB 357, Florida International University, North Miami, Florida 33181, USA 2Department of Biological Sciences, Eastern Illinois University, Charleston, Illinois 61920-3099, USA 3Corresponding author: [email protected] ABSTRACT. Calypsoeae represent a small tribe of anatomically little-known orchids with a wide distribution in the Western Hemisphere. Leaves are present in all genera, except Corallorhiza and Wullschlaegelia both of which are subterranean taxa. Stomata are abaxial (ad- and abaxial in Aplectrum) and tetracytic (anomocytic in Calypso). Fiber bundles are absent in leaves of all taxa examined except Govenia tingens. Stegmata are present in leaves of only Cremastra and Govenia. Roots are velamentous, except in filiform roots of Wullschlaegelia. Vegetative anatomy supports a relationship between Wullschlaegelia and Corallorhiza but does not support the grouping of winter-leaved Aplectrum and Tipularia nor proposed groupings of genera based on pollinarium features. -
Gastrodia Kuroshimensis (Orchidaceae: Epidendroideae: Gastrodieae), a New Mycoheterotrophic and Complete Cleistogamous Plant from Japan
Phytotaxa 278 (3): 265–272 ISSN 1179-3155 (print edition) http://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2016 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.278.3.6 Gastrodia kuroshimensis (Orchidaceae: Epidendroideae: Gastrodieae), a new mycoheterotrophic and complete cleistogamous plant from Japan KENJI SUETSUGU Department of Biology, Graduate School of Science, Kobe University, 1-1 Rokkodai, Nada-ku, Kobe, 657-8501, Japan. E-mail: [email protected] Abstract A new species, Gastrodia kuroshimensis (Orchidaceae: Epidendroideae: Gastrodieae), from Kuroshima Island, Kagoshima Prefecture, Japan, is described and illustrated. The outlined floral morphology indicates a close affinity to G. fontinalis, but it is easily distinguished by several characteristics, such as the cleistogamous floral condition, smaller perianth tube size and the anther cap joined with the column. Key words: Gastrodia, Japan, mycoheterotrophy, Ryukyu Islands, taxonomy Introduction The genus Gastrodia Brown (1810: 330; Gastrodieae, Epidendroideae) is a group of mycoheterotrophic orchids that consists of ca. 90 acceptable species (Hsu et al. 2016). It is distributed throughout the temperate and tropical regions of Asia, Oceania, Madagascar and Africa (Chung & Hsu 2006, Cribb et al. 2010, Tan et al. 2012). The genus is characterized by fleshy tubers, the absence of leaves, as well as the union of its sepals and petals, and the production of two mealy pollinia that lack caudicles. Many species of Gastrodia section Codonanthus (Schlechter 1911, Tuyama 1967) produce inflorescences that are 3–15 cm in length at flowering (Chung & Hsu 2006). In addition, as is the case with most other mycoheterotrophic species, they occur in a small population and appear for a short reproductive period (Tuyama 1982, Suetsugu et al. -
E29695d2fc942b3642b5dc68ca
ISSN 1409-3871 VOL. 9, No. 1—2 AUGUST 2009 Orchids and orchidology in Central America: 500 years of history CARLOS OSSENBACH INTERNATIONAL JOURNAL ON ORCHIDOLOGY LANKESTERIANA INTERNATIONAL JOURNAL ON ORCHIDOLOGY Copyright © 2009 Lankester Botanical Garden, University of Costa Rica Effective publication date: August 30, 2009 Layout: Jardín Botánico Lankester. Cover: Chichiltic tepetlauxochitl (Laelia speciosa), from Francisco Hernández, Rerum Medicarum Novae Hispaniae Thesaurus, Rome, Jacobus Mascardus, 1628. Printer: Litografía Ediciones Sanabria S.A. Printed copies: 500 Printed in Costa Rica / Impreso en Costa Rica R Lankesteriana / International Journal on Orchidology No. 1 (2001)-- . -- San José, Costa Rica: Editorial Universidad de Costa Rica, 2001-- v. ISSN-1409-3871 1. Botánica - Publicaciones periódicas, 2. Publicaciones periódicas costarricenses LANKESTERIANA i TABLE OF CONTENTS Introduction 1 Geographical and historical scope of this study 1 Political history of Central America 3 Central America: biodiversity and phytogeography 7 Orchids in the prehispanic period 10 The area of influence of the Chibcha culture 10 The northern region of Central America before the Spanish conquest 11 Orchids in the cultures of Mayas and Aztecs 15 The history of Vanilla 16 From the Codex Badianus to Carl von Linné 26 The Codex Badianus 26 The expedition of Francisco Hernández to New Spain (1570-1577) 26 A new dark age 28 The “English American” — the journey through Mexico and Central America of Thomas Gage (1625-1637) 31 The renaissance of science -
Three Novel Biphenanthrene Derivatives and a New Phenylpropanoid Ester from Aerides Multiflora and Their Α-Glucosidase Inhibitory Activity
plants Article Three Novel Biphenanthrene Derivatives and a New Phenylpropanoid Ester from Aerides multiflora and Their a-Glucosidase Inhibitory Activity May Thazin Thant 1,2, Boonchoo Sritularak 1,3,* , Nutputsorn Chatsumpun 4, Wanwimon Mekboonsonglarp 5, Yanyong Punpreuk 6 and Kittisak Likhitwitayawuid 1 1 Department of Pharmacognosy and Pharmaceutical Botany, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand; [email protected] (M.T.T.); [email protected] (K.L.) 2 Department of Pharmacognosy, University of Pharmacy, Yangon 11031, Myanmar 3 Natural Products for Ageing and Chronic Diseases Research Unit, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand 4 Department of Pharmacognosy, Faculty of Pharmacy, Mahidol University, Bangkok 10400, Thailand; [email protected] 5 Scientific and Technological Research Equipment Centre, Chulalongkorn University, Bangkok 10330, Thailand; [email protected] 6 Department of Agriculture, Kasetsart University, Bangkok 10900, Thailand; [email protected] * Correspondence: [email protected]; Tel.: +66-2218-8356 Abstract: A phytochemical investigation on the whole plants of Aerides multiflora revealed the presence of three new biphenanthrene derivatives named aerimultins A–C (1–3) and a new natural Citation: Thant, M.T.; Sritularak, B.; phenylpropanoid ester dihydrosinapyl dihydroferulate (4), together with six known compounds Chatsumpun, N.; Mekboonsonglarp, (5–10). The structures of the new compounds were elucidated by analysis of their spectroscopic W.; Punpreuk, Y.; Likhitwitayawuid, data. All of the isolates were evaluated for their a-glucosidase inhibitory activity. Aerimultin C K. Three Novel Biphenanthrene (3) showed the most potent activity. The other compounds, except for compound 4, also exhibited Derivatives and a New stronger activity than the positive control acarbose. -
Danhatchia (Orchidaceae)
Volume 23: 155–162 ELOPEA Publication date: 29 September 2020 T dx.doi.org/10.7751/telopea14437 Journal of Plant Systematics plantnet.rbgsyd.nsw.gov.au/Telopea • escholarship.usyd.edu.au/journals/index.php/TEL • ISSN 0312-9764 (Print) • ISSN 2200-4025 (Online) Flower size variation in Danhatchia (Orchidaceae) Matt A.M. Renner National Herbarium of New South Wales, Royal Botanic Garden and Domain Trust, Mrs Macquaries Road, Sydney NSW 2000, Australia Abstract Danhatchia novaehollandiae D.L.Jones & M.A.Clem. and D. australis (Hatch) Garay & Christenson were separated at species rank due to differences in petal length and flower opening, with the Australian species having smaller, tardily opening flowers. From this, flower lengths for Australia and New Zealand are expected to be bi-modally distributed with peaks at c. 3 mm and c. 5 mm respectively. Flowers on all available herbarium specimens in AK, CANB, and NSW were measured, and flower length was found to be unimodal, with nearly identical ranges in Australian and New Zealand plants. Flower size variation in Australian and New Zealand Danhatchia specimens has two significant contributing components, inter-individual variation, and ontogenetic variation where flowers increase in size as they age. Dimensions previously recorded for the two species reflect upper and lower limits on the range of variation in flower size present in both New Zealand and Australia, respectively. Within herbarium material, 20% of flowers on New Zealand specimens, and 40% of flowers on Australian specimens exhibited signs of opening. There was no correlation between flower size and opening, as might be expected if the two species were both present in Australia and/or New Zealand. -
Chromosome Numbers and Polyploidy Events in Korean Non-Commelinids Monocots: a Contribution to Plant Systematics
pISSN 1225-8318 − Korean J. Pl. Taxon. 48(4): 260 277 (2018) eISSN 2466-1546 https://doi.org/10.11110/kjpt.2018.48.4.260 Korean Journal of REVIEW Plant Taxonomy Chromosome numbers and polyploidy events in Korean non-commelinids monocots: A contribution to plant systematics Tae-Soo JANG* and Hanna WEISS-SCHNEEWEISS1 Department of Biological Science, College of Bioscience and Biotechnology, Chungnam National University, Daejeon 34134, Korea 1Department of Botany and Biodiversity Research, University of Vienna, A-1030 Vienna, Austria (Received 4 June 2018; Revised 9 September 2018; Accepted 16 December 2018) ABSTRACT: The evolution of chromosome numbers and the karyotype structure is a prominent feature of plant genomes contributing to or at least accompanying plant diversification and eventually leading to speciation. Polyploidy, the multiplication of whole chromosome sets, is widespread and ploidy-level variation is frequent at all taxonomic levels, including species and populations, in angiosperms. Analyses of chromosome numbers and ploidy levels of 252 taxa of Korean non-commelinid monocots indicated that diploids (ca. 44%) and tet- raploids (ca. 14%) prevail, with fewer triploids (ca. 6%), pentaploids (ca. 2%), and hexaploids (ca. 4%) being found. The range of genome sizes of the analyzed taxa (0.3–44.5 pg/1C) falls well within that reported in the Plant DNA C-values database (0.061–152.33 pg/1C). Analyses of karyotype features in angiosperm often involve, in addition to chromosome numbers and genome sizes, mapping of selected repetitive DNAs in chro- mosomes. All of these data when interpreted in a phylogenetic context allow for the addressing of evolution- ary questions concerning the large-scale evolution of the genomes as well as the evolution of individual repeat types, especially ribosomal DNAs (5S and 35S rDNAs), and other tandem and dispersed repeats that can be identified in any plant genome at a relatively low cost using next-generation sequencing technologies. -
Systematics, Phylogeography, Fungal Associations, and Photosynthesis
Systematics, Phylogeography, Fungal Associations, and Photosynthesis Gene Evolution in the Fully Mycoheterotrophic Corallorhiza striata Species Complex (Orchidaceae: Epidendroideae) Dissertation Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of the Ohio State University By Craig Francis Barrett, M. S. Evolution, Ecology, and Organismal Biology ***** The Ohio State University 2010 Dissertation Committee: Dr. John V. Freudenstein, Advisor Dr. John W. Wenzel Dr. Andrea D. Wolfe Copyright by Craig Francis Barrett 2010 ABSTRACT Corallorhiza is a genus of obligately mycoheterotrophic (fungus-eating) orchids that presents a unique opportunity to study phylogeography, taxonomy, fungal host specificity, and photosynthesis gene evolution. The photosysnthesis gene rbcL was sequenced for nearly all members of the genus Corallorhiza; evidence for pseudogene formation was found in both the C. striata and C. maculata complexes, suggesting multiple independent transitions to complete heterotrophy. Corallorhiza may serve as an exemplary system in which to study the plastid genomic consequences of full mycoheterotrophy due to relaxed selection on photosynthetic apparatus. Corallorhiza striata is a highly variable species complex distributed from Mexico to Canada. In an investigation of molecular and morphological variation, four plastid DNA clades were identified, displaying statistically significant differences in floral morphology. The biogeography of C. striata is more complex than previously hypothesized, with two main plastid lineages present in both Mexico and northern North America. These findings add to a growing body of phylogeographic data on organisms sharing this common distribution. To investigate fungal host specificity in the C. striata complex, I sequenced plastid DNA for orchids and nuclear DNA for fungi (n=107 individuals), and found that ii the four plastid clades associate with divergent sets of ectomycorrhizal fungi; all within a single, variable species, Tomentella fuscocinerea. -
19306 Chysis Bractescens Lindl. Perspectivas Para Su Micropropagación
Chysis bractescens Lindl. perspectivas para su micropropagación: Revisión de literatura Renata Alejandra Intriago Dueñas Escuela Agrícola Panamericana, Zamorano Honduras Noviembre, 2020 ZAMORANO CARRERA DE INGENIERÍA AGRONÓMICA Chysis bractescens Lindl. perspectivas para su micropropagación: Revisión de literatura Proyecto especial de graduación presentado como requisito parcial para optar al título de Ingeniero Agrónomo en el Grado Académico de Licenciatura Presentado por Renata Alejandra Intriago Dueñas Zamorano, Honduras Noviembre, 2020 i Chysis bractescens Lindl. perspectivas para su micropropagación: Revisión de literatura Presentado por: Renata Alejandra Intriago Dueñas Aprobado: _____________________________ _______________________________ María Alexandra Bravo, M.Sc. Rogel Castillo, M.Sc. Asesora Principal Director Departamento de Ciencia y Producción Agropecuaria _____________________________Cinthya Martinez (Nov 11, 2020 20:06 CST) _______________________________ Cynthia Martínez, Mtr. Luis Fernando Osorio, Ph.D. Asesora Vicepresidente y Decano Académico ii Chysis bractescens Lindl. perspectivas para su micropropagación: Revisión de literatura Renata Alejandra Intriago Dueñas Resumen. El objetivo de este estudio fue realizar una revisión de literatura sobre C. bractescens y las técnicas de propagación in vitro aplicadas a otras especies de orquídeas para su posible aplicación a C. bractescens. La familia Orchidaceae está conformada por más de 20 mil especies, las cuales tienen una alta capacidad de adaptación a diferentes condiciones ambientales. Son plantas de alto interés comercial debido a su diversidad de formas y colores, por lo que son especies que se han enfrentado la explotación comercial y al peligro de extinción, disminuyendo su capacidad reproductiva. Por esta razón, la micropropagación es una alternativa para lograr conservarlas. La orquídea Chysis bractescens Lindl. descubierta por John Lindley en 1837, conocida como Flor de Cera, es originaria del Sur de México, expandiéndose hasta Nicaragua. -
Universidad Autónoma De Nuevo León Facultad De Agronomía
UNIVERSIDAD AUTÓNOMA DE NUEVO LEÓN FACULTAD DE AGRONOMÍA TESIS MORFOGÉNESIS in vitro EN LAS ORQUÍDEAS Phalaenopsis spp. (Blume) Y Cattleya sp. (Lindley) PRESENTA QBP KARLA ANDREA FRAUSTO JAIME PARA OBTENER EL GRADO DE MAESTRÍA EN CIENCIAS EN PRODUCCIÓN AGRÍCOLA SEPTIEMBRE, 2017 UNIVERSIDAD AUTÓNOMA DE NUEVO LEÓN FACULTAD DE AGRONOMÍA TESIS MORFOGÉNESIS in vitro EN LAS ORQUÍDEAS Phalaenopsis spp. (Blume) Y Cattleya sp. (Lindley) PRESENTA QBP KARLA ANDREA FRAUSTO JAIME PARA OBTENER EL GRADO DE MAESTRÍA EN CIENCIAS EN PRODUCCIÓN AGRÍCOLA GENERAL ESCOBEDO, NUEVO LEÓN, MÉXICO SEPTIEMBRE, 2017 UNIVERSIDAD AUTÓNOMA DE NUEVO LEÓN FACULTAD DE AGRONOMÍA TESIS MORFOGÉNESIS in vitro EN LAS ORQUÍDEAS Phalaenopsis spp. (Blume) Y Cattleya sp. (Lindley) PRESENTA QBP KARLA ANDREA FRAUSTO JAIME PARA OBTENER EL GRADO DE MAESTRÍA EN CIENCIAS EN PRODUCCIÓN AGRÍCOLA GENERAL ESCOBEDO, NUEVO LEÓN, MÉXICO SEPTIEMBRE, 2017 ESTA TESIS FUE REVISADA Y APROBADA POR EL COMITÉ PARTICULAR COMO REQUISITO PARCIAL PARA OBTENER EL GRADO DE MAESTRÍA EN CIENCIAS EN PRODUCCIÓN AGRÍCOLA COMITÉ PARTICULAR ______________________________ Dra. Ma. Del Carmen Ojeda Zacarías Director ______________________________ M.C. Eduardo A. García Zambrano Co-Director ______________________________ Dr. Omar G. Alvarado Gómez Asesor ______________________________ Dra. Adriana Gutiérrez Díez Subdirectora de Estudios de Posgrado DEDICATORIA Dedico este trabajo y con mucho cariño a mi familia quienes siempre me han apoyado, ellos son el motor que me impulsa a seguir adelante. También se lo dedico a todos aquellos en quienes surja el interés por el cultivo de orquídeas, porque la belleza de sus flores es un reflejo de su largo camino en la lucha por subsistir, y no debe pasar desapercibido. “No os dejéis corromper por un escepticismo estéril y deprimente; no os desalentéis ante la tristeza de ciertas horas que pasan sobre las naciones.