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Flowering Plants Eudicots Apiales, Gentianales (Except Rubiaceae)
Edited by K. Kubitzki Volume XV Flowering Plants Eudicots Apiales, Gentianales (except Rubiaceae) Joachim W. Kadereit · Volker Bittrich (Eds.) THE FAMILIES AND GENERA OF VASCULAR PLANTS Edited by K. Kubitzki For further volumes see list at the end of the book and: http://www.springer.com/series/1306 The Families and Genera of Vascular Plants Edited by K. Kubitzki Flowering Plants Á Eudicots XV Apiales, Gentianales (except Rubiaceae) Volume Editors: Joachim W. Kadereit • Volker Bittrich With 85 Figures Editors Joachim W. Kadereit Volker Bittrich Johannes Gutenberg Campinas Universita¨t Mainz Brazil Mainz Germany Series Editor Prof. Dr. Klaus Kubitzki Universita¨t Hamburg Biozentrum Klein-Flottbek und Botanischer Garten 22609 Hamburg Germany The Families and Genera of Vascular Plants ISBN 978-3-319-93604-8 ISBN 978-3-319-93605-5 (eBook) https://doi.org/10.1007/978-3-319-93605-5 Library of Congress Control Number: 2018961008 # Springer International Publishing AG, part of Springer Nature 2018 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. -
Pollen Morphology and Taxonomy of Clutia L. (Euphorbiaceae)
POLLEN MORPHOLOGY AND TAXONOMY OF CLUTIA L. (EUPHORBIACEAE) TITUS DLAMINI University of Cape Town SYSTEMATICS HONOURS PROJECT SUPERVISED BY: H.P. LINDER UNIVERSITY OF CAPE TOWN 1996 The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgement of the source. The thesis is to be used for private study or non- commercial research purposes only. Published by the University of Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University of Cape Town BOLUS LIBRARY C24 0005 5091 Abstract 1111111111111 The pollen morphlogy of 34 species of Clutia L. (Euphorbiaceae) has been studied by light and scanning electron microscopy. The grains are medium sized, prolate to subprolate and rarely prolate spheroidal, tricolporate and distinctly tectate. The tectum is reticulate to punctate and the lumina are variable in size and shape. Pollen dimensions were found to be of no significance in defining infrageneric relationships while reticulation pattern, pitting density and roughnes of the exine distinguished several pollen groups when analysed by multivariate methods. The three large groups maintained their integrity regardless of method of multivariate analysis employed. A further comparison with the sections of Clutia suggested by Pax (1911) and Prain (1913) gave substantial support for some of these sections.Type ED 1 is characterised by irregular exine pits and rough tecta and is correlated to the section C. alatemoideae recognized by both workers in earlier sectioning of Clutia. Type RT 1 I corresponds to C. abyssinica and C. -
A Visual Guide to Collecting Plant Tissues for DNA
A visual guide to collecting plant tissues for DNA Collecting kit checklist Silica gel1 Permanent marker and pencil Resealable bags, airtight plastic container Razor blade / Surgical scissors Empty tea bags or coffee filters Ethanol and paper tissue or ethanol wipes Tags or jewellers tags Plant press and collecting book 1. Selection and preparation of fresh plant tissue: Sampling avoided. Breaking up leaf material will bruise the plant tissue, which will result in enzymes being released From a single plant, harvest 3 – 5 mature leaves, or that cause DNA degradation. Ideally, leaf material sample a piece of a leaf, if large (Picture A). Ideally should be cut into smaller fragments with thick a leaf area of 5 – 10 cm2 should be enough, but this midribs being removed (Picture C). If sampling robust amount should be adjusted if the plant material is leaf tissue (e.g. cycads, palms), use a razor blade or rich in water (e.g. a succulent plant). If leaves are surgical scissors (Picture D). small (e.g. ericoid leaves), sample enough material to equate a leaf area of 5 – 10 cm2. If no leaves are Succulent plants available, other parts can be sampled such as leaf buds, flowers, bracts, seeds or even fresh bark. If the If the leaves are succulent, use a razor blade to plant is small, select the biggest specimen, but never remove epidermal slices or scoop out parenchyma combine tissues from different individuals. tissue (Picture E). Cleaning Ideally, collect clean fresh tissues, however if the leaf or plant material is dirty or shows potential contamination (e.g. -
Towards Resolving Lamiales Relationships
Schäferhoff et al. BMC Evolutionary Biology 2010, 10:352 http://www.biomedcentral.com/1471-2148/10/352 RESEARCH ARTICLE Open Access Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences Bastian Schäferhoff1*, Andreas Fleischmann2, Eberhard Fischer3, Dirk C Albach4, Thomas Borsch5, Günther Heubl2, Kai F Müller1 Abstract Background: In the large angiosperm order Lamiales, a diverse array of highly specialized life strategies such as carnivory, parasitism, epiphytism, and desiccation tolerance occur, and some lineages possess drastically accelerated DNA substitutional rates or miniaturized genomes. However, understanding the evolution of these phenomena in the order, and clarifying borders of and relationships among lamialean families, has been hindered by largely unresolved trees in the past. Results: Our analysis of the rapidly evolving trnK/matK, trnL-F and rps16 chloroplast regions enabled us to infer more precise phylogenetic hypotheses for the Lamiales. Relationships among the nine first-branching families in the Lamiales tree are now resolved with very strong support. Subsequent to Plocospermataceae, a clade consisting of Carlemanniaceae plus Oleaceae branches, followed by Tetrachondraceae and a newly inferred clade composed of Gesneriaceae plus Calceolariaceae, which is also supported by morphological characters. Plantaginaceae (incl. Gratioleae) and Scrophulariaceae are well separated in the backbone grade; Lamiaceae and Verbenaceae appear in distant clades, while the recently described Linderniaceae are confirmed to be monophyletic and in an isolated position. Conclusions: Confidence about deep nodes of the Lamiales tree is an important step towards understanding the evolutionary diversification of a major clade of flowering plants. The degree of resolution obtained here now provides a first opportunity to discuss the evolution of morphological and biochemical traits in Lamiales. -
Chec List What Survived from the PLANAFLORO Project
Check List 10(1): 33–45, 2014 © 2014 Check List and Authors Chec List ISSN 1809-127X (available at www.checklist.org.br) Journal of species lists and distribution What survived from the PLANAFLORO Project: PECIES S Angiosperms of Rondônia State, Brazil OF 1* 2 ISTS L Samuel1 UniCarleialversity of Konstanz, and Narcísio Department C.of Biology, Bigio M842, PLZ 78457, Konstanz, Germany. [email protected] 2 Universidade Federal de Rondônia, Campus José Ribeiro Filho, BR 364, Km 9.5, CEP 76801-059. Porto Velho, RO, Brasil. * Corresponding author. E-mail: Abstract: The Rondônia Natural Resources Management Project (PLANAFLORO) was a strategic program developed in partnership between the Brazilian Government and The World Bank in 1992, with the purpose of stimulating the sustainable development and protection of the Amazon in the state of Rondônia. More than a decade after the PLANAFORO program concluded, the aim of the present work is to recover and share the information from the long-abandoned plant collections made during the project’s ecological-economic zoning phase. Most of the material analyzed was sterile, but the fertile voucher specimens recovered are listed here. The material examined represents 378 species in 234 genera and 76 families of angiosperms. Some 8 genera, 68 species, 3 subspecies and 1 variety are new records for Rondônia State. It is our intention that this information will stimulate future studies and contribute to a better understanding and more effective conservation of the plant diversity in the southwestern Amazon of Brazil. Introduction The PLANAFLORO Project funded botanical expeditions In early 1990, Brazilian Amazon was facing remarkably in different areas of the state to inventory arboreal plants high rates of forest conversion (Laurance et al. -
Phylogenetic Reconstruction Prompts Taxonomic Changes in Sauropus, Synostemon and Breynia (Phyllanthaceae Tribe Phyllantheae)
Blumea 59, 2014: 77–94 www.ingentaconnect.com/content/nhn/blumea RESEARCH ARTICLE http://dx.doi.org/10.3767/000651914X684484 Phylogenetic reconstruction prompts taxonomic changes in Sauropus, Synostemon and Breynia (Phyllanthaceae tribe Phyllantheae) P.C. van Welzen1,2, K. Pruesapan3, I.R.H. Telford4, H.-J. Esser 5, J.J. Bruhl4 Key words Abstract Previous molecular phylogenetic studies indicated expansion of Breynia with inclusion of Sauropus s.str. (excluding Synostemon). The present study adds qualitative and quantitative morphological characters to molecular Breynia data to find more resolution and/or higher support for the subgroups within Breynia s.lat. However, the results show molecular phylogeny that combined molecular and morphological characters provide limited synergy. Morphology confirms and makes the morphology infrageneric groups recognisable within Breynia s.lat. The status of the Sauropus androgynus complex is discussed. Phyllanthaceae Nomenclatural changes of Sauropus species to Breynia are formalised. The genus Synostemon is reinstated. Sauropus Synostemon Published on 1 September 2014 INTRODUCTION Sauropus in the strict sense (excluding Synostemon; Pruesapan et al. 2008, 2012) and Breynia are two closely related tropical A phylogenetic analysis of tribe Phyllantheae (Phyllanthaceae) Asian-Australian genera with up to 52 and 35 species, respec- using DNA sequence data by Kathriarachchi et al. (2006) pro- tively (Webster 1994, Govaerts et al. 2000a, b, Radcliffe-Smith vided a backbone phylogeny for Phyllanthus L. and related 2001). Sauropus comprises mainly herbs and shrubs, whereas genera. Their study recommended subsuming Breynia L. (in- species of Breynia are always shrubs. Both genera share bifid cluding Sauropus Blume), Glochidion J.R.Forst. & G.Forst., or emarginate styles, non-apiculate anthers, smooth seeds and and Synostemon F.Muell. -
P020110307527551165137.Pdf
CONTENT 1.MESSAGE FROM DIRECTOR …………………………………………………………………………………………………………………………………………………… 03 2.ORGANIZATION STRUCTURE …………………………………………………………………………………………………………………………………………………… 05 3.HIGHLIGHTS OF ACHIEVEMENTS …………………………………………………………………………………………………………………………………………… 06 Coexistence of Conserve and Research----“The Germplasm Bank of Wild Species ” services biodiversity protection and socio-economic development ………………………………………………………………………………………………………………………………………………… 06 The Structure, Activity and New Drug Pre-Clinical Research of Monoterpene Indole Alkaloids ………………………………………… 09 Anti-Cancer Constituents in the Herb Medicine-Shengma (Cimicifuga L) ……………………………………………………………………………… 10 Floristic Study on the Seed Plants of Yaoshan Mountain in Northeast Yunnan …………………………………………………………………… 11 Higher Fungi Resources and Chemical Composition in Alpine and Sub-alpine Regions in Southwest China ……………………… 12 Research Progress on Natural Tobacco Mosaic Virus (TMV) Inhibitors…………………………………………………………………………………… 13 Predicting Global Change through Reconstruction Research of Paleoclimate………………………………………………………………………… 14 Chemical Composition of a traditional Chinese medicine-Swertia mileensis……………………………………………………………………………… 15 Mountain Ecosystem Research has Made New Progress ………………………………………………………………………………………………………… 16 Plant Cyclic Peptide has Made Important Progress ………………………………………………………………………………………………………………… 17 Progresses in Computational Chemistry Research ………………………………………………………………………………………………………………… 18 New Progress in the Total Synthesis of Natural Products ……………………………………………………………………………………………………… -
Reconstructing the Basal Angiosperm Phylogeny: Evaluating Information Content of Mitochondrial Genes
55 (4) • November 2006: 837–856 Qiu & al. • Basal angiosperm phylogeny Reconstructing the basal angiosperm phylogeny: evaluating information content of mitochondrial genes Yin-Long Qiu1, Libo Li, Tory A. Hendry, Ruiqi Li, David W. Taylor, Michael J. Issa, Alexander J. Ronen, Mona L. Vekaria & Adam M. White 1Department of Ecology & Evolutionary Biology, The University Herbarium, University of Michigan, Ann Arbor, Michigan 48109-1048, U.S.A. [email protected] (author for correspondence). Three mitochondrial (atp1, matR, nad5), four chloroplast (atpB, matK, rbcL, rpoC2), and one nuclear (18S) genes from 162 seed plants, representing all major lineages of gymnosperms and angiosperms, were analyzed together in a supermatrix or in various partitions using likelihood and parsimony methods. The results show that Amborella + Nymphaeales together constitute the first diverging lineage of angiosperms, and that the topology of Amborella alone being sister to all other angiosperms likely represents a local long branch attrac- tion artifact. The monophyly of magnoliids, as well as sister relationships between Magnoliales and Laurales, and between Canellales and Piperales, are all strongly supported. The sister relationship to eudicots of Ceratophyllum is not strongly supported by this study; instead a placement of the genus with Chloranthaceae receives moderate support in the mitochondrial gene analyses. Relationships among magnoliids, monocots, and eudicots remain unresolved. Direct comparisons of analytic results from several data partitions with or without RNA editing sites show that in multigene analyses, RNA editing has no effect on well supported rela- tionships, but minor effect on weakly supported ones. Finally, comparisons of results from separate analyses of mitochondrial and chloroplast genes demonstrate that mitochondrial genes, with overall slower rates of sub- stitution than chloroplast genes, are informative phylogenetic markers, and are particularly suitable for resolv- ing deep relationships. -
Phylogeographical Structure of Liquidambar Formosana Hance Revealed by Chloroplast Phylogeography and Species Distribution Models
Article Phylogeographical Structure of Liquidambar formosana Hance Revealed by Chloroplast Phylogeography and Species Distribution Models 1,2, 1, 1 2 1 1, Rongxi Sun y , Furong Lin y, Ping Huang , Xuemin Ye , Jiuxin Lai and Yongqi Zheng * 1 State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Silviculture of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China; [email protected] (R.S.); [email protected] (F.L.); [email protected] (P.H.); [email protected] (J.L.) 2 Jiangxi Provincial Key Laboratory of Silviculture, College of Forestry, Jiangxi Agricultural University, Nanchang 330045, China; [email protected] * Correspondence: [email protected]; Tel.: +86-10-6288-8565 These authors contributed equally to this work. y Received: 2 September 2019; Accepted: 29 September 2019; Published: 1 October 2019 Abstract: To understand the origin and evolutionary history, and the geographical and historical causes for the formation of the current distribution pattern of Lquidambar formosana Hance, we investigated the phylogeography by using chloroplasts DNA (cpDNA) non-coding sequences and species distribution models (SDM). Four cpDNA intergenic spacer regions were amplified and sequenced for 251 individuals from 25 populations covering most of its geographical range in China. A total of 20 haplotypes were recovered. The species had a high level of chloroplast genetic variation (Ht = 0.909 0.0192) and a significant phylogeographical structure (genetic differentiation takes into ± account distances among haplotypes (Nst) = 0.730 > population differentiation that does not consider distances among haplotypes (Gst) = 0.645; p < 0.05), whereas the genetic variation within populations (Hs = 0.323 0.0553) was low. -
Cleistanthus Nokrensis (Euphorbiaceae), a New Species from Indian Himalaya
Taiwania, 59(3): 197‒205, 2014 DOI: 10.6165/tai.2014.59.197 RESEARCH ARTICLE Cleistanthus nokrensis (Euphorbiaceae), a New Species from Indian Himalaya Bikarma Singh(1,2*), S.K. Borthakur(3) and S. J. Phukan(4) 1. Plant Biotechnology Division (Herbarium & Plant Systematic Section), CSIR-Indian Institute of Integrative Medicine, Canal Road, Jammu-Tawi-180001, India. 2. Academy of Scientific and Innovative Research, Anusandhan Bhawan, 2 Rafi Marg, New Delhi-110001, India. 3. Department of Botany, Gauhati University, Guwahati-781014, Assam, India. 4. Botanical Survey of India, Eastern Regional Circle, Shillong 793001, India. * Corresponding author. Email: [email protected] (Manuscript received 27 December 2013; accepted 04 April 2014) ABSTRACT: A new species, Cleistanthus nokrensis (Euphorbiaceae), was collected and described from Indian Himalaya. This species is confined to the Nokrek Biosphere Reserve where it grows on the calcareous habitat in karst topography. On the basis of the critical features of its habitat, branches, petioles, leaves, and fruits, the species is compared with the closely related allied species, C. tonkinensis Jabl. and C. balakrishnanii Chakrab. Notes on its taxonomic description, photographs, ecology, associated species, population data, and threat perspective as per latest IUCN conservation status are provided. A key to the other taxa in the genus reported from India is provided for the first time, along with their distributional records and endemism. KEY WORDS: Cleistanthus nokrensis, Euphorbiaceae, Indian Himalaya, IUCN Red List, new species. INTRODUCTION to Chakrabarty et al. (2002) and Mabberley (2008) has its centre of diversity in the Old World tropics and Myers et al. (2000) estimated that 133,149 plant represented by 148 species. -
Ancistrocladaceae
Soltis et al—American Journal of Botany 98(4):704-730. 2011. – Data Supplement S2 – page 1 Soltis, Douglas E., Stephen A. Smith, Nico Cellinese, Kenneth J. Wurdack, David C. Tank, Samuel F. Brockington, Nancy F. Refulio-Rodriguez, Jay B. Walker, Michael J. Moore, Barbara S. Carlsward, Charles D. Bell, Maribeth Latvis, Sunny Crawley, Chelsea Black, Diaga Diouf, Zhenxiang Xi, Catherine A. Rushworth, Matthew A. Gitzendanner, Kenneth J. Sytsma, Yin-Long Qiu, Khidir W. Hilu, Charles C. Davis, Michael J. Sanderson, Reed S. Beaman, Richard G. Olmstead, Walter S. Judd, Michael J. Donoghue, and Pamela S. Soltis. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany 98(4): 704-730. Appendix S2. The maximum likelihood majority-rule consensus from the 17-gene analysis shown as a phylogram with mtDNA included for Polyosma. Names of the orders and families follow APG III (2009); other names follow Cantino et al. (2007). Numbers above branches are bootstrap percentages. 67 Acalypha Spathiostemon 100 Ricinus 97 100 Dalechampia Lasiocroton 100 100 Conceveiba Homalanthus 96 Hura Euphorbia 88 Pimelodendron 100 Trigonostemon Euphorbiaceae Codiaeum (incl. Peraceae) 100 Croton Hevea Manihot 10083 Moultonianthus Suregada 98 81 Tetrorchidium Omphalea 100 Endospermum Neoscortechinia 100 98 Pera Clutia Pogonophora 99 Cespedesia Sauvagesia 99 Luxemburgia Ochna Ochnaceae 100 100 53 Quiina Touroulia Medusagyne Caryocar Caryocaraceae 100 Chrysobalanus 100 Atuna Chrysobalananaceae 100 100 Licania Hirtella 100 Euphronia Euphroniaceae 100 Dichapetalum 100 -
Chloroplast Genome Analysis of Angiosperms and Phylogenetic Relationships Among
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.05.078212; this version posted May 5, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Chloroplast genome analysis of Angiosperms and phylogenetic relationships among Lamiaceae members with particular reference to teak (Tectona grandis L.f) P. MAHESWARI, C. KUNHIKANNAN AND R. YASODHA* Institute of Forest Genetics and Tree Breeding, Coimbatore 641 002 INDIA *Author for correspondence R. YASODHA, Institute of Forest Genetics and Tree Breeding, Coimbatore, India Telephone: +91 422 2484114; Fax number : +91 422 248549; e.mail: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.05.05.078212; this version posted May 5, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Availability of comprehensive phylogenetic tree for flowering plants which includes many of the economically important crops and trees is one of the essential requirements of plant biologists for diverse applications. It is the first study on the use of chloroplast genome of 3265 Angiosperm taxa to identify evolutionary relationships among the plant species. Sixty genes from chloroplast genome was concatenated and utilized to generate the phylogenetic tree. Overall the phylogeny was in correspondence with Angiosperm Phylogeny Group (APG) IV classification with very few taxa occupying incongruous position either due to ambiguous taxonomy or incorrect identification. Simple sequence repeats (SSRs) were identified from almost all the taxa indicating the possibility of their use in various genetic analyses.