bioRxiv preprint doi: https://doi.org/10.1101/2020.03.18.997569; this version posted March 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Running head: Phylogenomic analysis of the Coreinae 2 3 Title: Phylogenomics of the leaf-footed bug subfamily Coreinae (Hemiptera: Coreidae): 4 applicability of ultraconserved elements at shallower depths 5 6 Authors: Michael Forthman1,2*, Christine W. Miller1, Rebecca T. Kimball3 7 1 University of Florida, Entomology & Nematology Department, 1881 Natural Area Drive, 8 Gainesville, FL 32611, USA 9 2 California Department of Food and Agriculture, Plant Pest Diagnostics Branch, 3294 10 Meadowview Road, Sacramento, CA 95832 11 3 University of Florida, Department of Biology, 876 Newell Drive, Gainesville, FL 32611, USA 12 13 *Corresponding author: California Department of Food and Agriculture, Plant Pest Diagnostics 14 Branch, 3294 Meadowview Road, Sacramento, CA 95832, USA; e-mail: 15
[email protected] 16 17 18 19 20 21 22 23 bioRxiv preprint doi: https://doi.org/10.1101/2020.03.18.997569; this version posted March 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 24 Abstract 25 Baits targeting invertebrate ultraconserved elements (UCEs) are becoming more common 26 for phylogenetic studies. Recent studies have shown that invertebrate UCEs typically encode 27 proteins — and thus, are functionally different from more conserved vertebrate UCEs —can 28 resolve deep divergences (e.g., superorder to family ranks).