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Protistology 10 (1), 26–42 (2016) Protistology Culture collection of parasitic protists at the Zoological Institute RAS (CCPP ZIN RAS) Marina N. Malysheva1, Maria A. Mamkaeva2, Alexei Yu. Kostygov1,3, Alexander O. Frolov1 and Sergey A. Karpov1,2 1 Zoological Institute, Russian Academy of Sciences, St. Petersburg, Russia 2 St. Petersburg State University, St. Petersburg, Russia 3 Life Science Research Centre, Faculty of Science, University of Ostrava, Ostrava, Czech Republic Summary Establishment of the bank of living cultures of trypanosomatids at the Laboratory of Protozoology, Zoological Institute of the Russian Academy of Sciences, St. Petersbug, started in 1979. The first edition of the collection catalogue (Malysheva et al., 2001) included 33 strains of trypanosomatids. The present, second edition contains descriptions of 52 strains of trypanosomatids and 28 strains of aphelids and parasitic chytridiomycetes. The strains of aphelids and parasitic chytridiomycetes were isolated and initially cultivated at the Center for Culturing Collection of Microorganisms of the Research park of St. Petersburg State University. This collection is named the Culture Collection of Parasitic Protists of the Zoological Institute RAS (CCPP ZIN RAS). Key words: Aphelididae, bibliography, culture collection, GenBank, Gromochytri- aceae, living cultures, Mesochytriaceae, parasitic protists, Trypanosomatidae Introduction depositarium of parasitic protozoans was established at the Laboratory of Protozoology of the Zoological Study of biodiversity of parasitic protists is Institute RAS in 1979. The first edition of the one of the “hot spots” in modern biology. Many collection catalogue was published in 2001 and of these organisms cause dangerous infections of included 33 strains of trypanosomatids (Malysheva humans, animals and plants, and their genetic et al., 2001). The present, second edition contains peculiarities are the unique examples of evolutionary descriptions of 52 strains of trypanosomatids changes in eukaryotes. The establishment, support augmented with 28 strains of aphelids and parasitic and accession of such culture collections are chytridiomycetes. The structure of the catalogue is very important tasks for study of biodiversity, generally the same as in the first edition (Malysheva cell biology, and parasite-host interactions. A et al., 2001); however, it was modified in two aspects: © 2016 The Author(s) Protistology © 2016 Protozoological Society Affiliated with RAS Protistology · 27 1) the deposition GenBank Numbers were included, Host: Ornidia obesa (Fabricius, 1775) (Diptera). and 2) a new section “List of the lost strains” was GenBank: AF038023, AF038026, EU079130, added. EU095978, HM593012 Bibliography: Fiorini et al., 1989; Faria e Silva Cultivating methods et al., 1991; Hollar et al., 1998; Yurchenko et al., 2009, Teixeira et al., 2011. Axenic trypanosomatid cultures have been maintained in the liquid nutrient medium BHI Genus Crithidia Léger, 1902 (Difco) with addition of hemin (25 mg/ml) and C. brevicula Frolov et Malysheva, 1989 inoculated once a month. The cultures were placed Synonyms: Crithidia allae Frolov et Malysheva, in the fridge (5° C) after inoculation and subsequent 1989 (NBrA); Wallaceina brevicula Frolov et incubation during three days at 25° C. Malysheva, 1989 (NBr, NBrB); Wallaceina incons- For cultivation of the Blastocrithidia flagellates, tans Podlipaev, Frolov et Kolesnikov, 1990 (GK); a two-phase medium has been used: the blood agar as Wallaceina vicina Malysheva et Frolov, 2004 (WG); a dense phase, and a BHI medium with the addition Leptomonas peterhoffi Podlipaev, 1985 (in part) of serum (5-10%) as a liquid phase. For cultivation (101); Wallaceina podlipaevi Malysheva et Frolov, of the Trypanosoma flagellates, a slightly modified 2009 (101); Blastocrithidia gerricola Podlipaev, 1985 two-phase medium has been used: the blood agar as (in part) (KV1); Blastocrithidia miridarum Podlipaev a dense phase, and a physiological solution with the et Frolov, 1987 (in part) (BM33); Leptomonas addition of serum (5-10%) as a liquid phase. sp. (F2); Leptomonas sp. (F5); Leptomonas sp. Accumulating cultures of the aphelids and (F6); Leptomonas sp. (F7); Leptomonas sp. (F8); chytrids were maintained in culture on Tribonema Leptomonas sp. (CL8). gayanum Pasch. (strain 20 CALU) as the host 2 Strain NBr cultivated in the mineral medium: K2HPO4 (66.7 Depositor: A.O. Frolov mg/l); MgSO4 × 7H2O (33 mg/l); KNO3 (100 History: 1986, isolated by A.O. Frolov in the mg/l); microelements (1 mg/l) of stock solution: vicinity of the Lyady village, Pskov Province, Russia. ZnSO4 × 7H2O (0.22 g/l), MgSO4 (1.81 g/l), CuSO4 Host: Nabis (Nabis) brevis Scholtz, 1847 (Hete- × 5H2O (0.079 g/l), NaBO3 × 4H2O (2.63 mg/l), roptera: Nabidae). (NH4)6Mo7O2 × 4H2O (1 mg/l), FeSO4 × 7H2O (9.3 GenBank: AF153045, AF316620, AJ401357, mg/l), CaCl2 (1.2 mg/l), Co(NO3)2 × H2O (0.02 AJ401378, EU088277- EU088279, KJ443335- mg/l), EDTA (10 mg/l), pH 7.0-7.2 (Gromov and KJ443337, KJ443350, KJ474892- KJ474894, Titova, 1991) in the 12 ml glass tubes containing KJ474931, KJ474932, Z32854, 3-5 ml of the medium at room temperature in Bibliography: Frolov and Malysheva, 1989a, the presence of light (24 h). The inoculation was 1989b; 1990; Podlipaev et al., 1991; Malysheva and performed twice a month. Frolov, 1995; Podlipaev et al., 1998; Podlipaev and Frolov, 2000; Yurchenko et al., 2000; Merzlyak Catalogue of living cultures et al., 2001a, 2001b; Yurchenko et al., 2006; Yurchenko et al., 2009; Kostygov et al., 2014 Class Kinetoplastea Honigberg 1963 emend. 3 Strain NBrB Vickerman 1976 Depositor: A.O. Frolov Subclass Metakinetoplastina Vickerman 2004 History: Clonal culture. 1986, isolated from Order Trypanosomatida Kent 1880 stat. nov. the culture of C. brevicula (NBr) in the Laboratory Hollande 1952 of Protozoology ZIN RAS, St. Petersburg, Russia. Family Trypanosomatidae Doflein 1951 Host: Nabis (Nabis) brevis Scholtz, 1847 (Hete- Genus Angomonas Souza and Corte-Real, 1991 roptera: Nabidae). A. deanei (Carvalho, 1973) Bibliography: Frolov and Malysheva, 1989a, Synonyms: Crithidia deanei Carvalho, 1973; 1989b; Kolesnikov et al., 1990; Skarlato et al., 1990; Crithidia roitmani, Fiorini et al., 1989; Herpetomonas Podlipaev et al., 1991; Malysheva and Frolov, 1995. roitmani (Fiorini et al., 1989) 4 Strain WG 1 Strain TCC080E (=ATCC 50305) Depositor: M.N. Malysheva Depositor: S.A. Podlipaev History: 2000, isolated by M.N. Malysheva in History: 1990, received from E.P. Camargo, São Komarovo, Leningrad Province, Russia. Paulo University, Brazil. Isolated in Brazil. Host: Limnoporus rufoscutellatus (Latreille, 28 · Marina N. Malysheva et al. 1807) (Heteroptera: Gerridae). Host: Nabis (Nabicula) flavomarginatus Scholtz, GenBank: KJ443338-KJ443340, KJ443354, 1847 (Heteroptera: Nabidae). KJ474895-KJ474897, KJ474907-KJ474909 GenBank: AF375664, DQ140170, KJ443317- Bibliography: Kostygov et al., 2004; Malysheva KJ443319, KJ443344, KJ474874-KJ474876, and Frolov, 2004; Kostygov et al., 2014. KJ474913-KJ474915, 5 Strain 101 Bibliography: Podlipaev and Rokitskaya, 1999; Depositor: S.A. Podlipaev Kostygov et al., 2004; Yurchenko et al., 2006; History: 1980, isolated by S.A. Podlipaev in Kostygov et al., 2014. Peterhof, St. Petersburg, Russia. 9 Strain F5 Host: Nabis (Nabicula) flavomarginatus Scholtz, Depositor: S.A. Podlipaev 1847 (Heteroptera: Nabidae). History: 1986, isolated by S.A. Podlipaev at the GenBank: JN944133, AF153039, AF322390, Cape Kartesh (White Sea), Karelia, Russia. EU088283-EU088285, KJ443308-KJ443311, Host: Nabis (Nabicula) flavomarginatus Scholtz, KJ474867, KJ474935-KJ474937, KJ443306, 1847 (Heteroptera: Nabidae). KJ443307, KJ474866, KJ474933, KJ474934 GenBank: AY547460, KJ443320-KJ443322, Bibliography: Podlipaev, 1985; Kolesnikov et KJ443345, KJ474877-KJ474879, KJ474923, al., 1990; Marakhova et al., 1991; Podlipaev et al., KJ474924 1991; Podlipaev et al., 1998; Podlipaev and Frolov, Bibliography: Podlipaev et al., 1991; Podlipaev 2000; Merzlyak et al., 2001a; Kostygov et al., 2004; and Rokitskaya, 1999; Kostygov et al., 2004; Yurchenko et al., 2006; Malysheva and Frolov, Podlipaev et al., 2004; Kostygov et al., 2014. 2009; Yurchenko et al., 2009; Gerasimov et al., 10 Strain F7 2012a; Kostygov et al., 2014. Depositor: S.A. Podlipaev 6 Strain KV1 History: 1986, isolated by S.A. Podlipaev at the Synonyms: Blastocrithidia gerricola Podlipaev, Cape Kartesh (White Sea), Karelia, Russia. 1985 (in part). Host: Nabis (Nabicula) flavomarginatus Scholtz, Depositor: S.A. Podlipaev 1847 (Heteroptera: Nabidae). History: 1981, isolated by S.A. Podlipaev at the GenBank: KJ443326-KJ443328, KJ443347, Curonian Spit, Kaliningrad Province, Russia. KJ474883-KJ474885, KJ474910-KJ474912 Host: Gerris lacustris (Linnaeus, 1758) (Hete- Bibliography: Kostygov et al., 2004; Kostygov roptera). et al., 2014. GenBank: AF153036, AF322391, AJ401379, 11 Strain CL8 AY547459; KJ443332-KJ443334, KJ443351, Depositor: A.O. Frolov KJ474889-KJ474891, KJ474928-KJ474930. History: 1984, isolated by A.O. Frolov in Bibliography: Podlipaev, 1985; Kolesnikov et Peterhof, St. Petersburg, Russia. al., 1990; Podlipaev et al., 1991; Podlipaev et al., Host: Nabis (Dolichonabis) limbatus Dahlbom, 1998; Podlipaev and Frolov, 2000; Merzlyak et al., 1851 (Heteroptera: Nabidae). 2001a, 2001b; Podlipaev et al., 2004; Yurchenko et GenBank: KJ443314-KJ443316, KJ443349, al., 2006; Kostygov et al., 2014. KJ474871-KJ474873, KJ474925-KJ474927 7 Strain BM33 Bibliography: Podlipaev and Rokitskaya, 1999; Depositor: A.O.
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    The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library 5-2007 Systematics of the Lobulomycetales, a New Order within the Chytridiomycota David Rabern Simmons Follow this and additional works at: http://digitalcommons.library.umaine.edu/etd Part of the Botany Commons Recommended Citation Simmons, David Rabern, "Systematics of the Lobulomycetales, a New Order within the Chytridiomycota" (2007). Electronic Theses and Dissertations. 671. http://digitalcommons.library.umaine.edu/etd/671 This Open-Access Dissertation is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. SYSTEMATICS OF THE LOBULOMYCETALES, A NEW ORDER WITHIN THE CHYTRIDIOMYCOTA By David Rabern Simmons B.S. University of Virginia's College at Wise, 2004 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Botany and Plant Pathology) The Graduate School University of Maine May, 2007 Advisory Committee: Joyce E. Longcore, Research Associate Professor of Biology, Advisor Seanna L. Annis, Associate Professor of Mycology Seth Tyler, Professor of Zoology and Cooperating Professor of Marine Sciences Copyright 2007 David Rabern Simmons SYSTEMATICS OF THE LOBULOMYCETALES, A NEW ORDER WITHIN THE CHYTRIDIOMYCOTA By David Rabern Simmons Thesis Advisor: Dr. Joyce E. Longcore An Abstract of the Thesis Presented in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Botany and Plant Pathology) May, 2007 Based on molecular phylogenetic analyses, the polyphyletic order Chytridiales, one of the four orders in the Chytridiomycota, contains several well- supported clades.
  • Rhizophlyctidalesda New Order in Chytridiomycota

    Rhizophlyctidalesda New Order in Chytridiomycota

    mycological research 112 (2008) 1031–1048 journal homepage: www.elsevier.com/locate/mycres Rhizophlyctidalesda new order in Chytridiomycota Peter M. LETCHER*, Martha J. POWELL, Donald J. S. BARR, Perry F. CHURCHILL, William S. WAKEFIELD, Kathryn T. PICARD Department of Biological Sciences, The University of Alabama, 411 Hackberry Lane, 319 Biology, Box 870344, Tuscaloosa, AL 35487, USA article info abstract Article history: Rhizophlyctis rosea (Chytridiomycota) is an apparently ubiquitous, soil-inhabiting, cellulose- Received 10 January 2008 degrading chytrid that is the type for Rhizophlyctis. Previous studies have revealed multiple Received in revised form zoospore subtypes among morphologically indistinguishable isolates in the R. rosea com- 27 February 2008 plex sensu Barr. In this study we analysed zoospore ultrastructure and combined nu- Accepted 18 March 2008 rRNA gene sequences (partial LSU and complete ITS1–5.8S–ITS2) of 49 isolates from globally Corresponding Editor: distributed soil samples. Based on molecular monophyly and zoospore ultrastructure, this Gordon W. Beakes group of Rhizophlyctis rosea-like isolates is designated as a new order, the Rhizophlyctidales. Within the Rhizophlyctidales are four new families (Rhizophlyctidaceae, Sonoraphlyctidaceae, Keywords: Arizonaphlyctidaceae, and Borealophlyctidaceae) and three new genera (Sonoraphlyctis, Arizona- Phylogeny phlyctis, and Borealophlyctis). rDNA Rhizophlyctis ª 2008 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Ultrastructure Zoospore
  • 3 Zoologische Rätsel Zur Endemitenfauna Im Nationalpark Gesäuse

    3 Zoologische Rätsel Zur Endemitenfauna Im Nationalpark Gesäuse

    3 E NDEMITEN -R Ä T S E L I M NP GE S Ä U S E 2014 3 Zoologische Rätsel zur Endemitenfauna im Nationalpark Gesäuse Tiergruppen: Weberknechte, Wanzen & Zikaden Inkl. Arbeitsnachweis: Landschneckenfauna des NPs Gesäuse Auftraggeber: Nationalpark Gesäuse GmbH Endbericht: Spinnentiere& Insekten Graz, im Dez. 2014 3 E NDEMITEN -R Ä T S E L I M NP GE S Ä U S E 2014 ÖKOTEAM – Institut für Tierökologie und Naturraumplanung OG Ingenieurbüro für Biologie A - 8010 Graz, Bergmanngasse 22 Tel.: 0316/35 16 50 Fax DW 4 e-mail: [email protected] 3 Zoologische Rätsel zur Endemitenfauna im Nationalpark Gesäuse Tiergruppen: Weberknechte, Wanzen & Zikaden Inklusive Arbeitsnachweis: Landschneckenfauna des Nationalparks Gesäuse Endbericht 2014 Version 02 Auftraggeber: Fachbearbeitungen: Nationalpark Gesäuse GmbH Mag. Dr. Thomas FRIEß Leitung Fachbereich Naturschutz/Naturraum PD Mag. Dr. Werner HOLZINGER Mag. MSc. Daniel Kreiner Mag. Dr. Christian KOMPOSCH 8913 Weng im Gesäuse 2 Mag. Lydia SCHLOSSER Technische AssistentInnen: Sandra AURENHAMMER MSc. Mag. Brigitte KOMPOSCH MSc. Mag. Julia SCHWAB Lektorat: Astrid LEITNER Auftragnehmer: Mag. Daniel KREINER MSc. ÖKOTEAM – Institut für Tierökologie und Naturraumplanung OG Projektleitung: Mag. Dr. Christian KOMPOSCH Zitiervorschlag: ÖKOTEAM – KOMPOSCH Ch., T. FRIEß, W. HOLZINGER & L. SCHLOSSER (2014): 3 Zoologische Rätsel zur Endemitenfauna im Nationalpark Gesäuse. Tiergruppen: Weberknechte, Wanzen & Zikaden. – Unveröffentlichter Projektbericht im Auftrag der Nationalpark Gesäuse GmbH, 86 Seiten. Graz, am 10. Dez.
  • Clade (Kingdom Fungi, Phylum Chytridiomycota)

    Clade (Kingdom Fungi, Phylum Chytridiomycota)

    TAXONOMIC STATUS OF GENERA IN THE “NOWAKOWSKIELLA” CLADE (KINGDOM FUNGI, PHYLUM CHYTRIDIOMYCOTA): PHYLOGENETIC ANALYSIS OF MOLECULAR CHARACTERS WITH A REVIEW OF DESCRIBED SPECIES by SHARON ELIZABETH MOZLEY (Under the Direction of David Porter) ABSTRACT Chytrid fungi represent the earliest group of fungi to have emerged within the Kingdom Fungi. Unfortunately despite the importance of chytrids to understanding fungal evolution, the systematics of the group is in disarray and in desperate need of revision. Funding by the NSF PEET program has provided an opportunity to revise the systematics of chytrid fungi with an initial focus on four specific clades in the order Chytridiales. The “Nowakowskiella” clade was chosen as a test group for comparing molecular methods of phylogenetic reconstruction with the more traditional morphological and developmental character system used for classification in determining generic limits for chytrid genera. Portions of the 18S and 28S nrDNA genes were sequenced for isolates identified to genus level based on morphology to seven genera in the “Nowakowskiella” clade: Allochytridium, Catenochytridium, Cladochytrium, Endochytrium, Nephrochytrium, Nowakowskiella, and Septochytrium. Bayesian, parsimony, and maximum likelihood methods of phylogenetic inference were used to produce trees based on one (18S or 28S alone) and two-gene datasets in order to see if there would be a difference depending on which optimality criterion was used and the number of genes included. In addition to the molecular analysis, taxonomic summaries of all seven genera covering all validly published species with a listing of synonyms and questionable species is provided to give a better idea of what has been described and the morphological and developmental characters used to circumscribe each genus.