INTERMEDIARY METABOLISM of the SIALIC ACIDS George W
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A) and Co-Fermentation (B
Simultaneous Co-Fermentation of Mixed Sugars: A Promising Strategy for Producing Cellulosic Biofuels and Chemicals Na Wei PI: Yong-Su Jin Energy Biosciences Institute /Institute for Genomic Biology University of Illinois at Urbana-Champaign Corn ethanol vs. Cellulosic ethanol Corn starch Cellulosic biomass Gelatinization Pretreatment + Cellulases Amylases Glucose + Xylose + Acetate Glucose + Fermentation inhibitors yeast yeast Ethanol + CO2 Ethanol + CO2 • Single sugar fermentation • Mixed sugar fermentation • No fermentation inhibitors • Fermentation inhibitors • Easy high loading • Difficulties in high loading 2 Saccharomyces cerevisiae: a workhorse strain for industrial ethanol production The most widely used yeast since ancient times in baking and brewing Osmotolerant and ethanol-tolerant Numerous genetic/genomic tools are available Overexpression / Knockout Expression of heterologous enzymes Cannot utilize xylose Not suitable for producing cellulosic biofuels 3 Basic strategy in metabolic engineering of xylose fermentation in S. cerevisiae Scheffersomyces stipitis Saccharomyces cerevisiae Xylose Xylose XYL1 Xylitol Xylitol XYL2 Xylulose Xylulose XYL3 X-5-P X-5-P PPP and Glycolysis PPP and Glycolysis Ethanol Ethanol . Natural xylose fermenting . High ethanol tolerance . Low ethanol tolerance . Amenable to metabolic engineering 4 Laboratory evolution of an engineered S. cerevisiae strain for further improvement DA24 n 16 Enrichment Single colony by serial culture isolation in 80 g/L of xylose Evaluation 5 Comparison of xylose fermentation capability between engineered S. cerevisiae and S. stipitis Engineered S. cerevisiae S. stipitis The engineered S. cerevisiae strain consumed xylose almost as fast as S. stipitis, the fastest xylose-fermenting yeast 6 Ha et al. PNAS, 108:504-509 Why we want to co-ferment cellobiose and xylose? Typical fermentation profile of glucose and xylose mixture Glucose Glycolysis Ethanol Pentose Phosphate Pathway CO2 Xylose 7 Engineered S. -
Bioresources.Com
PEER-REVIEWED ARTICLE bioresources.com ADSORPTION OF CELLOBIOSE-PENDANT POLYMERS TO A CELLULOSE MATRIX DETERMINED BY QUARTZ CRYSTAL MICROBALANCE ANALYSIS Shingo Yokota,† Takefumi Ohta, Takuya Kitaoka,* and Hiroyuki Wariishi Cellobiose-pendant polymers were synthesized by radical polymerization and their affinity for a cellulose matrix was investigated by quartz crystal microbalance (QCM). A 2-(methacryloyloxy)ethylureido cellobiose (MOU-Cel) macromer was synthesized by coupling cellobiosylamine with 2-(methacryloyloxy)ethyl isocyanate followed by polymerization in an aqueous radical reaction system. The interaction of the resulting poly(MOU-Cel) with a pure cellulose matrix in water was evaluated by QCM analysis. Poly(MOU-Cel) was strongly adsorbed to the cellulose substrate, whereas neither cellobiose nor MOU-Cel macromer exhibited an attractive interaction with cellulose. This specific interaction was not inhibited by the presence of ionic contaminants, suggesting that multiple cellobiopyranose moieties in each polymer molecule might cooperatively enhance its affinity for cellulose. Moderate insertion of acrylamide units into the polymer backbone improved the affinity for cellulose, possibly due to an increased mobility of sugar side chains. Polymers such as these, with a high affinity for cellulose, have potential applications for the surface functionalization of cellulose-based materials, including paper products. Keywords: Cellobiose; Cellulose; Sugar-pendant polymer; Non-electrostatic interaction; Quartz crystal microbalance Contact information: Department of Forest and Forest Products Sciences, Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan; †Present address: Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan; *Corresponding author: [email protected] INTRODUCTION Cellulose is the most abundant, renewable carbohydrate resource and has been widely used as a raw material in a variety of applications (Klemm et al. -
Cellobiose 2-Epimerase, Process for Producing
(19) TZZ ¥ZZ_T (11) EP 2 395 080 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: C12N 15/00 (2006.01) C12N 1/15 (2006.01) 06.08.2014 Bulletin 2014/32 C12N 1/19 (2006.01) C12N 1/21 (2006.01) C12N 5/10 (2006.01) C12N 9/90 (2006.01) (2006.01) (2006.01) (21) Application number: 10738433.1 C12N 15/09 C12P 19/00 (22) Date of filing: 25.01.2010 (86) International application number: PCT/JP2010/050928 (87) International publication number: WO 2010/090095 (12.08.2010 Gazette 2010/32) (54) CELLOBIOSE 2-EPIMERASE, PROCESS FOR PRODUCING SAME, AND USE OF SAME CELLOBIOSE 2-EPIMERASE, HERSTELLUNGSVERFAHREN DAFÜR UND VERWENDUNG CELLOBIOSE 2-ÉPIMÉRASE, PROCÉDÉ DE PRODUCTION DE CELLE-CI ET UTILISATION DE CELLE-CI (84) Designated Contracting States: (74) Representative: Daniels, Jeffrey Nicholas AT BE BG CH CY CZ DE DK EE ES FI FR GB GR Page White & Farrer HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL Bedford House PT RO SE SI SK SM TR John Street London WC1N 2BF (GB) (30) Priority: 05.02.2009 JP 2009025070 (56) References cited: (43) Date of publication of application: WO-A1-2008/062555 14.12.2011 Bulletin 2011/50 • PARK CHANG-SU ET AL: "Characterization of a (73) Proprietor: Hayashibara Co., Ltd. recombinant cellobiose 2-epimerase from Okayama-shi, Okayama (JP) Caldicellulosiruptor saccharolyticus and its application in the production of mannose from (72) Inventors: glucose.", APPLIED MICROBIOLOGY AND • WATANABE Hikaru BIOTECHNOLOGY DEC 2011 LNKD- PUBMED: Okayama-shi 21691788,vol. -
Rapid Method for the Estimation of Total Free Monosaccharide Content of Corn Stover Hydrolysate Using HPAE-PAD
Application Note 225 Note Application Rapid Method for the Estimation of Total Free Monosaccharide Content of Corn Stover Hydrolysate Using HPAE-PAD Valoran Hanko and Jeff Rohrer Thermo Fisher Scientific, Sunnyvale, CA, USA Introduction The Thermo Scientific™ Dionex™ CarboPac™ PA1 Compositional carbohydrate analysis of biocrop feedstock anion-exchange column rapidly elutes corn stover is essential to the efficient production of cellulosic carbohydrates, resolving the monosacccharides from the ethanol.1 Corn stover is the leaf, husk, stalk, and cob unretained and undetected noncarbohydrate components remaining in the field after harvest and makes up about of acid-hydrolyzed corn stover. Under these conditions, half the yield of a crop of corn. It can also contain weeds disaccharides and trisaccharides are also resolved, with a and grasses collected during the harvest of corn stover. total elution time less than 10 min. Thus, the sum of all Along with other lignocellulosic biomass, corn stover the carbohydrate peaks is a useful measure of the energy provides 1.3 billion tons of raw material annually and is a production potential of acid-hydrolyzed corn stover. common feedstock for fermentation systems used in The carbohydrate content of acid-hydrolyzed corn stover biofuel production.2 can be very high, and for some carbohydrates can even Corn stover is acid-hydrolyzed to release a water-soluble approach their saturation concentration in an aqueous mixture of carbohydrates, typically consisting of arabi- solution. When used for saccharide determinations, PAD nose, glucose, galactose, mannose, xylose, fructose, and with a gold working electrode is a sensitive detection cellobiose among other noncarbohydrate substances in method, but like other detection techniques it does not 0.5 to 1.5% (w/w) sulfuric acid.3,4 The concentration of have an unlimited linear range. -
Converting Galactose Into the Rare Sugar Talose with Cellobiose 2-Epimerase As Biocatalyst
molecules Article Converting Galactose into the Rare Sugar Talose with Cellobiose 2-Epimerase as Biocatalyst Stevie Van Overtveldt, Ophelia Gevaert, Martijn Cherlet, Koen Beerens and Tom Desmet * Centre for Synthetic Biology, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Gent, Belgium; [email protected] (S.V.O.); [email protected] (O.G.); [email protected] (M.C.); [email protected] (K.B.) * Correspondence: [email protected]; Tel.: +32-9264-9920 Academic Editors: Giorgia Oliviero and Nicola Borbone Received: 17 September 2018; Accepted: 29 September 2018; Published: 1 October 2018 Abstract: Cellobiose 2-epimerase from Rhodothermus marinus (RmCE) reversibly converts a glucose residue to a mannose residue at the reducing end of β-1,4-linked oligosaccharides. In this study, the monosaccharide specificity of RmCE has been mapped and the synthesis of D-talose from D-galactose was discovered, a reaction not yet known to occur in nature. Moreover, the conversion is industrially relevant, as talose and its derivatives have been reported to possess important antimicrobial and anti-inflammatory properties. As the enzyme also catalyzes the keto-aldo isomerization of galactose to tagatose as a minor side reaction, the purity of talose was found to decrease over time. After process optimization, 23 g/L of talose could be obtained with a product purity of 86% and a yield of 8.5% (starting from 4 g (24 mmol) of galactose). However, higher purities and concentrations can be reached by decreasing and increasing the reaction time, respectively. In addition, two engineering attempts have also been performed. -
Mechanism and Kinetics of Cellobiose Decomposition in Sub- and Supercritical Water
Ind. Eng. Chem. Res. 1998, 37, 357-361 357 Mechanism and Kinetics of Cellobiose Decomposition in Sub- and Supercritical Water B. M. Kabyemela, M. Takigawa, T. Adschiri, R. M. Malaluan, and K. Arai* Department of Chemical Engineering, Tohoku University, Aza, Aoba, Aramaki, Aoba-ku, Sendai 980-77, Japan Cellobiose decomposition kinetics and products in sub- and supercritical water were studied with a flow apparatus at temperatures from 300 to 400 °C at pressures from 25 to 40 MPa, and at short residence times (0.04-2 s). Cellobiose was found to decompose via hydrolysis of the glycosidic bond and via pyrolysis of the reducing end. Pyrolysis products were glycosylerythrose (GE) and glycosylglycolaldehyde (GG) which were confirmed by FAB-MS. Hydrolysis products were glucose, erythrose, and glycolaldehyde from cellobiose, GE, and GG, respectively, as well as glucose decomposition products. The kinetics from glucose decomposition were used to fit the experimental results and evaluate rate constants of hydrolysis (kH) and pyrolysis rate constants (k1 and k2). The activation energy for the hydrolysis of cellobiose and pyrolysis products GG and GE was found to be 108.6, 110.5, and 106.1 kJ/mol, respectively. In the supercritical region, there was a decrease in the pyrolysis rates k1 and k2 and a corresponding increase in hydrolysis selectivity from 85% to 95% as the pressure increased from 30 to 40 MPa. Introduction Reaction times were in the order of 1-14 min, and the product analysis was able to account for 60% of the Cellulose hydrolysis products have the potential to cellobiose decomposition products. -
Cellobiose/Mannitol Sugar Permeability Test Complements Biopsy Histopathology in Clinical Investigation of the Jejunum
Gut: first published as 10.1136/gut.25.11.1241 on 1 November 1984. Downloaded from Gut, 1984, 25, 1241-1246 Cellobiose/mannitol sugar permeability test complements biopsy histopathology in clinical investigation of the jejunum S STROBEL, W G BRYDON, AND ANNE FERGUSON From the Gastro-Intestinal Unit, University ofEdinburgh and Western General Hospital, Edinburgh, Scotland SUMMARY Intestinal permeability to probe molecules has been shown to correlate closely with the presence or absence of villous atrophy in a jejunal biopsy. The purpose of this study was to establish if there exist groups of patients with functional derangement of intestinal permeability but normal histopathology of the small bowel mucosa. In 135 patients a cellobiose/mannitol permeability test was performed at the same time as jejunal biopsy. Diagnosis included coeliac disease, Crohn's disease, irritable bowel syndrome, idiopathic diarrhoea, self diagnosed food allergy, atopic eczema and postinfectious malabsorption. The value of the cellobiose/mannitol test in identifying patients with abnormal jejunal biopsy histopathology was confirmed. The permeability test was abnormal in all 28 patients with partial or subtotal villous atrophy, and also in all 10 in whom there was a high intraepithelial lymphocyte count despite normal villi and crypts. Functional abnormality of the small intestine has not previously been reported in patients with this jejunal biopsy abnormality. Abnormalities of permeability were also found in patients with idiopathic diarrhoea, folate deficiency, postinfectious or traveller's diarrhoea, small bowel Crohn's disease, and atopic eczema. These results show that sugar permeability tests have more potential in clinical investigation than merely serving as screening tests before jejunal biopsy. -
Ii- Carbohydrates of Biological Importance
Carbohydrates of Biological Importance 9 II- CARBOHYDRATES OF BIOLOGICAL IMPORTANCE ILOs: By the end of the course, the student should be able to: 1. Define carbohydrates and list their classification. 2. Recognize the structure and functions of monosaccharides. 3. Identify the various chemical and physical properties that distinguish monosaccharides. 4. List the important monosaccharides and their derivatives and point out their importance. 5. List the important disaccharides, recognize their structure and mention their importance. 6. Define glycosides and mention biologically important examples. 7. State examples of homopolysaccharides and describe their structure and functions. 8. Classify glycosaminoglycans, mention their constituents and their biological importance. 9. Define proteoglycans and point out their functions. 10. Differentiate between glycoproteins and proteoglycans. CONTENTS: I. Chemical Nature of Carbohydrates II. Biomedical importance of Carbohydrates III. Monosaccharides - Classification - Forms of Isomerism of monosaccharides. - Importance of monosaccharides. - Monosaccharides derivatives. IV. Disaccharides - Reducing disaccharides. - Non- Reducing disaccharides V. Oligosaccarides. VI. Polysaccarides - Homopolysaccharides - Heteropolysaccharides - Carbohydrates of Biological Importance 10 CARBOHYDRATES OF BIOLOGICAL IMPORTANCE Chemical Nature of Carbohydrates Carbohydrates are polyhydroxyalcohols with an aldehyde or keto group. They are represented with general formulae Cn(H2O)n and hence called hydrates of carbons. -
Structures and Characteristics of Carbohydrates in Diets Fed to Pigs: a Review Diego M
Navarro et al. Journal of Animal Science and Biotechnology (2019) 10:39 https://doi.org/10.1186/s40104-019-0345-6 REVIEW Open Access Structures and characteristics of carbohydrates in diets fed to pigs: a review Diego M. D. L. Navarro1, Jerubella J. Abelilla1 and Hans H. Stein1,2* Abstract The current paper reviews the content and variation of fiber fractions in feed ingredients commonly used in swine diets. Carbohydrates serve as the main source of energy in diets fed to pigs. Carbohydrates may be classified according to their degree of polymerization: monosaccharides, disaccharides, oligosaccharides, and polysaccharides. Digestible carbohydrates include sugars, digestible starch, and glycogen that may be digested by enzymes secreted in the gastrointestinal tract of the pig. Non-digestible carbohydrates, also known as fiber, may be fermented by microbial populations along the gastrointestinal tract to synthesize short-chain fatty acids that may be absorbed and metabolized by the pig. These non-digestible carbohydrates include two disaccharides, oligosaccharides, resistant starch, and non-starch polysaccharides. The concentration and structure of non-digestible carbohydrates in diets fed to pigs depend on the type of feed ingredients that are included in the mixed diet. Cellulose, arabinoxylans, and mixed linked β-(1,3) (1,4)-D-glucans are the main cell wall polysaccharides in cereal grains, but vary in proportion and structure depending on the grain and tissue within the grain. Cell walls of oilseeds, oilseed meals, and pulse crops contain cellulose, pectic polysaccharides, lignin, and xyloglucans. Pulse crops and legumes also contain significant quantities of galacto-oligosaccharides including raffinose, stachyose, and verbascose. -
The Utilization of Sugars by Fungi Virgil Greene Lilly
West Virginia Agricultural and Forestry Experiment Davis College of Agriculture, Natural Resources Station Bulletins And Design 1-1-1953 The utilization of sugars by fungi Virgil Greene Lilly H. L. Barnett Follow this and additional works at: https://researchrepository.wvu.edu/ wv_agricultural_and_forestry_experiment_station_bulletins Digital Commons Citation Lilly, Virgil Greene and Barnett, H. L., "The utilization of sugars by fungi" (1953). West Virginia Agricultural and Forestry Experiment Station Bulletins. 362T. https://researchrepository.wvu.edu/wv_agricultural_and_forestry_experiment_station_bulletins/629 This Bulletin is brought to you for free and open access by the Davis College of Agriculture, Natural Resources And Design at The Research Repository @ WVU. It has been accepted for inclusion in West Virginia Agricultural and Forestry Experiment Station Bulletins by an authorized administrator of The Research Repository @ WVU. For more information, please contact [email protected]. Digitized by the Internet Archive in 2010 with funding from Lyrasis IVIembers and Sloan Foundation http://www.archive.org/details/utilizationofsug362lill ^ni^igaro mU^ 'wmSS'"""' m^ r^' c t» WES: VIRGINIA UNIVERSITY AGRICULTURAL EXPERIMENT STAl. luiietin I62T 1 June 1953 ; The Utilization of Sugars by Fungi by Virgil Greene Lilly and H. L. Barnett WEST VIRGINIA UNIVERSITY AGRICULTURAL EXPERIMENT STATION ACKNOWLEDGMENT The authors wish to thank research assist- ants Miss Janet Posey and Mrs. Betsy Morris Waters for their faithful and conscientious help during some of these experiments. THE AUTHORS H. L. Barnett is Mycologist at the West Virginia University Agricultural Experiment Station and Professor of Mycology in the College of Agriculture, Forestry, and Home Economics. Virgil Greene Lilly is Physiol- ogist at the West Virginia University Agricul- tural Experiment Station and Professor of Physiology in the College of Agriculture, Forestry, and Home Economics. -
Extending Enzyme Molecular Recognition with an Expanded Amino Acid Alphabet
Extending enzyme molecular recognition with an expanded amino acid alphabet Claire L. Windlea,b, Katie J. Simmonsa,c, James R. Aulta,b, Chi H. Trinha,b, Adam Nelsona,c,1, Arwen R. Pearsona,2,3, and Alan Berrya,b,1 aAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom; bSchool of Molecular and Cellular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom; and cSchool of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom Edited by Perry Allen Frey, University of Wisconsin–Madison, Madison, WI, and approved January 20, 2017 (received for review October 26, 2016) Natural enzymes are constructed from the 20 proteogenic amino for catalysis and arise through posttranslational modifications of acids, which may then require posttranslational modification or the the polypeptide chain (21, 22), allowing access to chemistries not recruitment of coenzymes or metal ions to achieve catalytic function. otherwise provided by the 20 proteogenic amino acids. Here, we demonstrate that expansion of the alphabet of amino acids Technologies for the protein engineer to incorporate Ncas into can also enable the properties of enzymes to be extended. A proteins at specifically chosen sites, either by genetic means (23–25) chemical mutagenesis strategy allowed a wide range of noncanon- or by chemical modification (26, 27), have recently been developed. ical amino acids to be systematically incorporated throughout an These approaches are powerful because, unlike traditional protein active site to alter enzymic substrate specificity. Specifically, 13 engineering with the 20 canonical amino acids, protein engineering different noncanonical side chains were incorporated at 12 different with Ncas has almost unlimited novel side-chain structures and positions within the active site of N-acetylneuraminic acid lyase chemistries from which to choose. -
Reaction of Glucose Catalyzed by Framework and Extraframework Tin Sites in Zeolite Beta
Reaction of Glucose Catalyzed by Framework and Extraframework Tin Sites in Zeolite Beta Thesis by Ricardo Bermejo-Deval In Partial Fulfillment of the Requirements for the degree of Doctor of Philosophy CALIFORNIA INSTITUTE OF TECHNOLOGY Pasadena, California 2014 (Defended 12 May 2014) ii 2014 Ricardo Bermejo-Deval All Rights Reserved iii ACKNOWLEDGEMENTS The past years at Caltech have been one of the most challenging periods of my life, learning to be a better person and being part of the world of science. I feel privileged to have interacted with such talented and inspiring colleagues and scientists, as well as those I have disagreed with. The variety of people I have encountered and the experiences I have gathered have helped me to gain scholarship, wisdom, confidence and critical thinking, as much as to become an open-minded person to any opinion or people. First and foremost, I am very grateful to my advisor and mentor, Professor Mark E. Davis, for his financial, scientific and personal support. I appreciate his patience, flexibility, advice and scientific discussions, helping me to grow and mature scientifically. I would like to thank the thesis committee Professors Richard Flagan, Jay Labinger and Theodor Agapie, for their discussions and kindness. I appreciate everyone in the Davis group for helping me in the lab throughout these years. Special thanks to Yasho for helping me get started in the lab, to Bingjun and Raj for scientific advice, and to Marat for helpful talks. I am also very thankful to Sonjong Hwang for SS NMR, David Vandervelde for NMR and Mona Shahgholi for mass spectrometry.