Carbohydrate) (Lecture-Part 5)
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Reactions of Saccharides Catalyzed by Molybdate Ions. XXII.* Oxidative Degradation of D-Galactose Phenylhydrazones
Reactions of saccharides catalyzed by molybdate ions. XXII.* Oxidative degradation of D-galactose phenylhydrazones L. PETRUŠ, V. BILIK, K. LINEK, and M. MISIKOVA Institute of Chemistry, Slovak Academy of Sciences, 809 33 Bratislava Received 4 March 1977 D-Galactose phenylhydrazone was degraded with hydrogen peroxide in the presence of molybdate ions to D-lyxose in 50% yield. The oxidative degrada tion of D-galactose 2,5-dichlorophenylhydrazone and D-galactose 2,4-dinitro- phenylhydrazone gave D-lyxose and D-galactose in the ratio 4:1 and 1:9, respectively. 2,6-Anhydro-l-deoxy-l-nitro-D-galactitol was prepared from D-lyxose. Фенилгидразон D-галактозы разрушается перекисью водорода в при сутствии молибдатных ионов с 50%-ным превращением в D-ликсозу. В случае окислительной деградации 2,5-дихлорфенилгидразона D-галак тозы образуется D-ликсоза и D-галактоза в отношении 4:1, в случае же 2,4-динитрофенилгидразона D-галактозы в отношении 1:9. Из D-ликсозы был приготовлен 2,6-ангидро-1-дезокси-1-нитро-о-галактитол. Treatment of 1-deoxy-l-nitroalditols in alkaline medium with hydrogen peroxi de in the presence of molybdate ions leads to the formation of corresponding aldoses [1]. This reaction is, particularly with nitroalditols prepared from L-ribose [2] and D-glucose [3], accompanied by a parallel elimination reaction leading back to the starting aldoses. Schulz and Somogyi [4] treating L-rhamnose phenylhydra zone with oxygen in acetone or 2,3,4,5,6-penta-O-acetyl-D-galactose phenylhy drazone in benzene, obtained the corresponding 1-hydroperoxo derivatives which decomposed in alcohol solution of sodium methanolate to the corresponding pentoses. -
Pentose PO4 Pathway, Fructose, Galactose Metabolism.Pptx
Pentose PO4 pathway, Fructose, galactose metabolism The Entner Doudoroff pathway begins with hexokinase producing Glucose 6 PO4 , but produce only one ATP. This pathway prevalent in anaerobes such as Pseudomonas, they doe not have a Phosphofructokinase. The pentose phosphate pathway (also called the phosphogluconate pathway and the hexose monophosphate shunt) is a biochemical pathway parallel to glycolysis that generates NADPH and pentoses. While it does involve oxidation of glucose, its primary role is anabolic rather than catabolic. There are two distinct phases in the pathway. The first is the oxidative phase, in which NADPH is generated, and the second is the non-oxidative synthesis of 5-carbon sugars. For most organisms, the pentose phosphate pathway takes place in the cytosol. For each mole of glucose 6 PO4 metabolized to ribulose 5 PO4, 2 moles of NADPH are produced. 6-Phosphogluconate dh is not only an oxidation step but it’s also a decarboxylation reaction. The primary results of the pathway are: The generation of reducing equivalents, in the form of NADPH, used in reductive biosynthesis reactions within cells (e.g. fatty acid synthesis). Production of ribose-5-phosphate (R5P), used in the synthesis of nucleotides and nucleic acids. Production of erythrose-4-phosphate (E4P), used in the synthesis of aromatic amino acids. Transketolase and transaldolase reactions are similar in that they transfer between carbon chains, transketolases 2 carbon units or transaldolases 3 carbon units. Regulation; Glucose-6-phosphate dehydrogenase is the rate- controlling enzyme of this pathway. It is allosterically stimulated by NADP+. The ratio of NADPH:NADP+ is normally about 100:1 in liver cytosol. -
Electronic Supplementary Information
Electronic Supplementary Material (ESI) for Chemical Science. This journal is © The Royal Society of Chemistry 2019 Electronic Supplementary Information Poly(ionic liquid)s as a Distinct Receptor Material to Create Highly- Integrated Sensing Platform for Efficiently Identifying a Myriad of Saccharides Wanlin Zhang, Yao Li, Yun Liang, Ning Gao, Chengcheng Liu, Shiqiang Wang, Xianpeng Yin, and Guangtao Li* *Corresponding authors: Guangtao Li ([email protected]) S1 Contents 1. Experimental Section (Page S4-S6) Materials and Characterization (Page S4) Experimental Details (Page S4-S6) 2. Figures and Tables (Page S7-S40) Fig. S1 SEM image of silica colloidal crystal spheres and PIL inverse opal spheres. (Page S7) Fig. S2 Adsorption isotherm of PIL inverse opal. (Page S7) Fig. S3 Dynamic mechanical analysis and thermal gravimetric analysis of PIL materials. (Page S7) Fig. S4 Chemical structures of 23 saccharides. (Page S8) Fig. S5 The counteranion exchange of PIL photonic spheres from Br- to DCA. (Page S9) Fig. S6 Reflection and emission spectra of spheres for saccharides. (Page S9) Table S1 The jack-knifed classification on single-sphere array for 23 saccharides. (Page S10) Fig. S7 Lower detection concentration at 10 mM of the single-sphere array. (Page S11) Fig. S8 Lower detection concentration at 1 mM of the single-sphere array. (Page S12) Fig. S9 PIL sphere exhibiting great pH robustness within the biological pH range. (Page S12) Fig. S10 Exploring the tolerance of PIL spheres to different conditions. (Page S13) Fig. S11 Exploring the reusability of PIL spheres. (Page S14) Fig. S12 Responses of spheres to sugar alcohols. (Page S15) Fig. -
Carbohydrates: Structure and Function
CARBOHYDRATES: STRUCTURE AND FUNCTION Color index: . Very important . Extra Information. “ STOP SAYING I WISH, START SAYING I WILL” 435 Biochemistry Team *هذا العمل ﻻ يغني عن المصدر المذاكرة الرئيسي • The structure of carbohydrates of physiological significance. • The main role of carbohydrates in providing and storing of energy. • The structure and function of glycosaminoglycans. OBJECTIVES: 435 Biochemistry Team extra information that might help you 1-synovial fluid: - It is a viscous, non-Newtonian fluid found in the cavities of synovial joints. - the principal role of synovial fluid is to reduce friction between the articular cartilage of synovial joints during movement O 2- aldehyde = terminal carbonyl group (RCHO) R H 3- ketone = carbonyl group within (inside) the compound (RCOR’) 435 Biochemistry Team the most abundant organic molecules in nature (CH2O)n Carbohydrates Formula *hydrate of carbon* Function 1-provides important part of energy Diseases caused by disorders of in diet . 2-Acts as the storage form of energy carbohydrate metabolism in the body 3-structural component of cell membrane. 1-Diabetesmellitus. 2-Galactosemia. 3-Glycogen storage disease. 4-Lactoseintolerance. 435 Biochemistry Team Classification of carbohydrates monosaccharides disaccharides oligosaccharides polysaccharides simple sugar Two monosaccharides 3-10 sugar units units more than 10 sugar units Joining of 2 monosaccharides No. of carbon atoms Type of carbonyl by O-glycosidic bond: they contain group they contain - Maltose (α-1, 4)= glucose + glucose -Sucrose (α-1,2)= glucose + fructose - Lactose (β-1,4)= glucose+ galactose Homopolysaccharides Heteropolysaccharides Ketone or aldehyde Homo= same type of sugars Hetero= different types Ketose aldose of sugars branched unBranched -Example: - Contains: - Contains: Examples: aldehyde group glycosaminoglycans ketone group. -
Part 1 in Our Series of Carbohydrate Lectures. in This Section, You Will Learn About Monosaccharide Structure
Welcome to Part 1 in our series of Carbohydrate lectures. In this section, you will learn about monosaccharide structure. The building blocks of larger carbohydrate polymers. 1 First, let’s review why learning about carbohydrates is important. Carbohydrates are used by biological systems as fuels and energy resources. Carbohydrates typically provide quick energy and are one of the primary energy storage forms in animals. Carbohydrates also provide the precursors to other major macromolecules within the body, including the deoxyribose and ribose required for nucleic acid biosynthesis. Carbohydrates can also provide structural support and cushioning/shock absorption, as well as cell‐cell communication, identification, and signaling. 2 Carbohydrates, as their name implies, are water hydrates of carbon, and they all have the same basic core formula (CH2O)n and are always found in the ratio of 1 carbon to 2 hydrogens to 1 oxygen (1:2:1) making them easy to identify from their molecular formula. 3 Carbohydrates can be divided into subcategories based on their complexity. The simplest carbohydrates are the monosaccharides which are the simple sugars required for the biosynthesis of all the other carbohydrate types. Disaccharides consist of two monosaccharides that have been joined together by a covalent bond called the glycosidic bond. Oligosaccharides are polymers that consist of a few monosaccharides covalently linked together, and Polysaccharides are large polymers that contain hundreds to thousands of monosaccharide units all joined together by glycosidic bonds. The remainder of this lecture will focus on monosaccharides 4 Monosaccharides all have alcohol functional groups associated with them. In addition they also have one additional functional group, either an aldehyde or a ketone. -
Qualitative Tests for Carbohydrates
Qualitative tests for Carbohydrates 1 OBJECTIVE • To study the properties of carbohydrates • To determine the identity of an unknown carbohydrate by carrying out a series of chemical reactions 06/15/14 Biochemistry For Medics- Lecture notes 2 GENERAL INTRODUCTION • Carbohydrates are widely distributed in plants and animals; they have important structural and metabolic roles. • Chemically carbohydrates are aldehyde or ketone derivatives of polyhydric alcohols • Glucose is the most important carbohydrate; the major metabolic fuel of mammals (except ruminants) and a universal fuel of the fetus. • It is the precursor for synthesis of all the other carbohydrates in the body. 06/15/14 Biochemistry For Medics- Lecture notes 3 CLASSIFICATION OF CARBOHYDRATES (1) Monosaccharides are those carbohydrates that cannot be hydrolyzed into simpler carbohydrates. They may be classified as trioses, tetroses, pentoses, hexoses, or heptoses, depending upon the number of carbon atoms; and as aldoses or ketoses depending upon whether they have an aldehyde or ketone group. 06/15/14 Biochemistry For Medics- Lecture notes 4 CLASSIFICATION OF CARBOHYDRATES (2)Disaccharides are condensation products of two monosaccharide units; examples are maltose and sucrose. (3)Oligosaccharides are condensation products of three to ten monosaccharides. (4)Polysaccharides are condensation products of more than ten monosaccharide units; examples are the starches and dextrins, which may be linear or branched polymers. 06/15/14 Biochemistry For Medics- Lecture notes 5 MONOSACCHARIDES -
Ii- Carbohydrates of Biological Importance
Carbohydrates of Biological Importance 9 II- CARBOHYDRATES OF BIOLOGICAL IMPORTANCE ILOs: By the end of the course, the student should be able to: 1. Define carbohydrates and list their classification. 2. Recognize the structure and functions of monosaccharides. 3. Identify the various chemical and physical properties that distinguish monosaccharides. 4. List the important monosaccharides and their derivatives and point out their importance. 5. List the important disaccharides, recognize their structure and mention their importance. 6. Define glycosides and mention biologically important examples. 7. State examples of homopolysaccharides and describe their structure and functions. 8. Classify glycosaminoglycans, mention their constituents and their biological importance. 9. Define proteoglycans and point out their functions. 10. Differentiate between glycoproteins and proteoglycans. CONTENTS: I. Chemical Nature of Carbohydrates II. Biomedical importance of Carbohydrates III. Monosaccharides - Classification - Forms of Isomerism of monosaccharides. - Importance of monosaccharides. - Monosaccharides derivatives. IV. Disaccharides - Reducing disaccharides. - Non- Reducing disaccharides V. Oligosaccarides. VI. Polysaccarides - Homopolysaccharides - Heteropolysaccharides - Carbohydrates of Biological Importance 10 CARBOHYDRATES OF BIOLOGICAL IMPORTANCE Chemical Nature of Carbohydrates Carbohydrates are polyhydroxyalcohols with an aldehyde or keto group. They are represented with general formulae Cn(H2O)n and hence called hydrates of carbons. -
Supporting Information Summary: 1
Supporting Information Summary: 1. SI Materials and Methods 2. Tables S1-S6 3. Figures S1-S10 4. Supporting Text 5. References SI Materials and Methods In silico modeling The most current version of the genome scale model for Escherichia coli K-12 MG1655, iJO1366(Orth et al., 2011), was utilized in this study as the base model before adding underground reactions related to the five substrates analyzed as previously reported(Notebaart et al., 2014). The underground reactions previously reported were added to iJO1366 using the constraint-based modeling package, COBRApy(Ebrahim et al., 2013). All growth simulations using parsimonious flux balance analysis were conducted using COBRApy. Growth simulations were performed by optimizing the default core biomass objective function (a representation of essential biomass compounds in stoichiometric amounts)(Feist and Palsson, 2010). To simulate aerobic growth on a given substrate, the exchange reaction lower bound for that -1 -1 substrate was adjusted to -10 mmol gDW h r . Sampling was conducted to determine the most likely high flux metabolic pathways for growth on D-2-deoxyribse (Dataset S3). The Artificial Centering Hit-and-Run algorithm, optGpSampler(Megchelenbrink et al., 2014), was utilized to sample the steady-state solution space. The lower bound of the biomass objective function was set to 90% of the optimum in order to better simulate realistic growth conditions. The number of sample points used was two times the number of reactions in the iJO1366 model (5186 sample points) and the step count was set to 25000 in order to ensure a nearly uniformly sampled solution space. Thus for each reaction, a distribution of likely flux states was acquired. -
Structures and Characteristics of Carbohydrates in Diets Fed to Pigs: a Review Diego M
Navarro et al. Journal of Animal Science and Biotechnology (2019) 10:39 https://doi.org/10.1186/s40104-019-0345-6 REVIEW Open Access Structures and characteristics of carbohydrates in diets fed to pigs: a review Diego M. D. L. Navarro1, Jerubella J. Abelilla1 and Hans H. Stein1,2* Abstract The current paper reviews the content and variation of fiber fractions in feed ingredients commonly used in swine diets. Carbohydrates serve as the main source of energy in diets fed to pigs. Carbohydrates may be classified according to their degree of polymerization: monosaccharides, disaccharides, oligosaccharides, and polysaccharides. Digestible carbohydrates include sugars, digestible starch, and glycogen that may be digested by enzymes secreted in the gastrointestinal tract of the pig. Non-digestible carbohydrates, also known as fiber, may be fermented by microbial populations along the gastrointestinal tract to synthesize short-chain fatty acids that may be absorbed and metabolized by the pig. These non-digestible carbohydrates include two disaccharides, oligosaccharides, resistant starch, and non-starch polysaccharides. The concentration and structure of non-digestible carbohydrates in diets fed to pigs depend on the type of feed ingredients that are included in the mixed diet. Cellulose, arabinoxylans, and mixed linked β-(1,3) (1,4)-D-glucans are the main cell wall polysaccharides in cereal grains, but vary in proportion and structure depending on the grain and tissue within the grain. Cell walls of oilseeds, oilseed meals, and pulse crops contain cellulose, pectic polysaccharides, lignin, and xyloglucans. Pulse crops and legumes also contain significant quantities of galacto-oligosaccharides including raffinose, stachyose, and verbascose. -
Plausible Prebiotic Synthesis of Aldopentoses from Simple Substrates, Glycolaldehyde and Formaldehyde
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/259637530 Plausible prebiotic synthesis of aldopentoses from simple substrates, glycolaldehyde and formaldehyde Article in Paleontological Journal · December 2013 DOI: 10.1134/S0031030113090062 CITATION READS 1 57 3 authors: Irina Delidovich Oxana Taran RWTH Aachen University Boreskov Institute of Catalysis 53 PUBLICATIONS 1,539 CITATIONS 136 PUBLICATIONS 1,152 CITATIONS SEE PROFILE SEE PROFILE Valentin N Parmon Boreskov Institute of Catalysis 755 PUBLICATIONS 10,960 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Indo-Russia Joint project -Development of integrated (biotechnological and nanocatalytic) biorefinery for fuels and platform chemicals production from lignocellulosic biomass (crop/wood residues) View project In situ NMR of catalytic reactions View project All content following this page was uploaded by Oxana Taran on 20 July 2015. The user has requested enhancement of the downloaded file. ISSN 00310301, Paleontological Journal, 2013, Vol. 47, No. 9, pp. 1093–1096. © Pleiades Publishing, Ltd., 2013. Plausible Prebiotic Synthesis of Aldopentoses from Simple Substrates, Glycolaldehyde and Formaldehyde I. V. Delidovicha, O. P. Taranb, and V. N. Parmonc aBoreskov Institute of Catalysis, Siberian Branch, Russian Academy of Sciences, pr. akademika Lavrent’eva 5, Novosibirsk, 630090 Russia bNovosibirsk State Technical University, pr. K. Marksa, 20, Novosibirsk, 630073 Russia cNovosibirsk State University, ul. Pirogova 2, Novosibirsk, 630090 Russia email: [email protected] Received February 15, 2012 Abstract—Possible ways of abiotic catalytic synthesis of biologically significant aldopentoses (ribose, xylose, arabinose, lyxose) from elementary substrates, i.e., formaldehyde (FA) and glycolaldehyde (GA) in aqueous solutions are discussed. -
Extreme Ultraviolet Photoionization of Aldoses and Ketoses ⇑ Joong-Won Shin A,C, Feng Dong A,C, Michael E
Chemical Physics Letters 506 (2011) 161–166 Contents lists available at ScienceDirect Chemical Physics Letters journal homepage: www.elsevier.com/locate/cplett Extreme ultraviolet photoionization of aldoses and ketoses ⇑ Joong-Won Shin a,c, Feng Dong a,c, Michael E. Grisham b,c, Jorge J. Rocca b,c, Elliot R. Bernstein a,c, a Department of Chemistry, Colorado State University, Fort Collins, CO 80523-1872, USA b Department of Electrical and Computer Engineering, Colorado State University, Fort Collins, CO 80523-1373, USA c NSF Engineering Research Center for Extreme Ultraviolet Science and Technology, Colorado State University, CO 80523-1320, USA article info abstract Article history: Gas phase monosaccharides (2-deoxyribose, ribose, arabinose, xylose, lyxose, glucose galactose, fructose, Received 24 January 2011 and tagatose), generated by laser desorption of solid sample pellets, are ionized with extreme ultraviolet In final form 9 March 2011 photons (EUV, 46.9 nm, 26.44 eV). The resulting fragment ions are analyzed using a time of flight mass Available online 29 March 2011 spectrometer. All aldoses yield identical fragment ions regardless of size, and ketoses, while also gener- ating same ions as aldoses, yields additional features. Extensive fragmentation of the monosaccharides is the result the EUV photons ionizing various inner valence orbitals. The observed fragmentation patterns are not dependent upon hydrogen bonding structure or OH group orientation. Ó 2011 Elsevier B.V. All rights reserved. 1. Introduction conformer can additionally be either an a or b anomer, depending upon the orientation of the OH at C1 (for aldose) or C2 (for ketose) Functions of biological molecules depend upon their different anomeric centers. -
Extending Enzyme Molecular Recognition with an Expanded Amino Acid Alphabet
Extending enzyme molecular recognition with an expanded amino acid alphabet Claire L. Windlea,b, Katie J. Simmonsa,c, James R. Aulta,b, Chi H. Trinha,b, Adam Nelsona,c,1, Arwen R. Pearsona,2,3, and Alan Berrya,b,1 aAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom; bSchool of Molecular and Cellular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom; and cSchool of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom Edited by Perry Allen Frey, University of Wisconsin–Madison, Madison, WI, and approved January 20, 2017 (received for review October 26, 2016) Natural enzymes are constructed from the 20 proteogenic amino for catalysis and arise through posttranslational modifications of acids, which may then require posttranslational modification or the the polypeptide chain (21, 22), allowing access to chemistries not recruitment of coenzymes or metal ions to achieve catalytic function. otherwise provided by the 20 proteogenic amino acids. Here, we demonstrate that expansion of the alphabet of amino acids Technologies for the protein engineer to incorporate Ncas into can also enable the properties of enzymes to be extended. A proteins at specifically chosen sites, either by genetic means (23–25) chemical mutagenesis strategy allowed a wide range of noncanon- or by chemical modification (26, 27), have recently been developed. ical amino acids to be systematically incorporated throughout an These approaches are powerful because, unlike traditional protein active site to alter enzymic substrate specificity. Specifically, 13 engineering with the 20 canonical amino acids, protein engineering different noncanonical side chains were incorporated at 12 different with Ncas has almost unlimited novel side-chain structures and positions within the active site of N-acetylneuraminic acid lyase chemistries from which to choose.