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SI Appendix for Hopkins, Melanie J, and Smith, Andrew B
Hopkins and Smith, SI Appendix SI Appendix for Hopkins, Melanie J, and Smith, Andrew B. Dynamic evolutionary change in post-Paleozoic echinoids and the importance of scale when interpreting changes in rates of evolution. Corrections to character matrix Before running any analyses, we corrected a few errors in the published character matrix of Kroh and Smith (1). Specifically, we removed the three duplicate records of Oligopygus, Haimea, and Conoclypus, and removed characters C51 and C59, which had been excluded from the phylogenetic analysis but mistakenly remain in the matrix that was published in Appendix 2 of (1). We also excluded Anisocidaris, Paurocidaris, Pseudocidaris, Glyphopneustes, Enichaster, and Tiarechinus from the character matrix because these taxa were excluded from the strict consensus tree (1). This left 164 taxa and 303 characters for calculations of rates of evolution and for the principal coordinates analysis. Other tree scaling methods The most basic method for scaling a tree using first appearances of taxa is to make each internal node the age of its oldest descendent ("stand") (2), but this often results in many zero-length branches which are both theoretically questionable and in some cases methodologically problematic (3). Several methods exist for modifying zero-length branches. In the case of the results shown in Figure 1, we assigned a positive length to each zero-length branch by having it share time equally with a preceding, non-zero-length branch (“equal”) (4). However, we compared the results from this method of scaling to several other methods. First, we compared this with rates estimated from trees scaled such that zero-length branches share time proportionally to the amount of character change along the branches (“prop”) (5), a variation which gave almost identical results as the method used for the “equal” method (Fig. -
Fossil Spatangoid Echinoids of Cuba
SMITHSONIAN CONTRIBUTIONS TO PALEOBIOLOGY • NUMBER 55 Fossil Spatangoid Echinoids of Cuba Porter M. Kier SMITHSONIAN INSTITUTION PRESS City of Washington 1984 ABSTRACT Kier, Porter M. Fossil Spatangoid Echinoids of Cuba. Smithsonian Contributions to Paleobiology, number 55, 336 pages, frontispiece, 45 figures, 90 plates, 6 tables, 1984.—The fossil spatangoid echinoids of Cuba are described based for the most part on specimens in the Sanchez Roig Collection. Seventy-nine species are recognized including 10 from the Late Cretaceous, 36 from the Eocene, 20 from the Oligocene-Miocene, 11 from the Miocene, and 2 of uncertain age. Three of the Eocene species are new: Schizas ter forme III, Linthia monteroae, and Antillaster albeari. A new genus of schizasterid is described, Caribbaster, with the Eocene Prenaster loveni Cotteau as the type-species. A new Asterostoma, A. pawsoni, is described from the Eocene of Jamaica. The Eocene age of the Cuban echinoid-bearing localities is confirmed by the presence outside Cuba of many ofthe same species in beds dated on other fossils. Some evidence supports the Miocene determinations, but the echinoids are of little assistance in resolving the question whether the Cuban beds attributed to the Oligocene are Oligocene or Miocene. Cuban, and in general, the Caribbean Tertiary echinoid faunas are distinct from those in Europe and the Mediterranean. Many genera are confined to the Caribbean. The Cuban fauna is also different from that found nearby in Florida. This difference may be due to a suggested greater depth of water in Cuba. Se describen los equinoideos espatangoideos de Cuba, incluyendo los es- pecimenes de la Coleccion Sanchez Roig. -
Contributions in BIOLOGY and GEOLOGY
MILWAUKEE PUBLIC MUSEUM Contributions In BIOLOGY and GEOLOGY Number 51 November 29, 1982 A Compendium of Fossil Marine Families J. John Sepkoski, Jr. MILWAUKEE PUBLIC MUSEUM Contributions in BIOLOGY and GEOLOGY Number 51 November 29, 1982 A COMPENDIUM OF FOSSIL MARINE FAMILIES J. JOHN SEPKOSKI, JR. Department of the Geophysical Sciences University of Chicago REVIEWERS FOR THIS PUBLICATION: Robert Gernant, University of Wisconsin-Milwaukee David M. Raup, Field Museum of Natural History Frederick R. Schram, San Diego Natural History Museum Peter M. Sheehan, Milwaukee Public Museum ISBN 0-893260-081-9 Milwaukee Public Museum Press Published by the Order of the Board of Trustees CONTENTS Abstract ---- ---------- -- - ----------------------- 2 Introduction -- --- -- ------ - - - ------- - ----------- - - - 2 Compendium ----------------------------- -- ------ 6 Protozoa ----- - ------- - - - -- -- - -------- - ------ - 6 Porifera------------- --- ---------------------- 9 Archaeocyatha -- - ------ - ------ - - -- ---------- - - - - 14 Coelenterata -- - -- --- -- - - -- - - - - -- - -- - -- - - -- -- - -- 17 Platyhelminthes - - -- - - - -- - - -- - -- - -- - -- -- --- - - - - - - 24 Rhynchocoela - ---- - - - - ---- --- ---- - - ----------- - 24 Priapulida ------ ---- - - - - -- - - -- - ------ - -- ------ 24 Nematoda - -- - --- --- -- - -- --- - -- --- ---- -- - - -- -- 24 Mollusca ------------- --- --------------- ------ 24 Sipunculida ---------- --- ------------ ---- -- --- - 46 Echiurida ------ - --- - - - - - --- --- - -- --- - -- - - --- -
Relative Biodiversity Trends of the Cenozoic Caribbean Region
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Doctoral Dissertations Graduate School 12-2003 Relative biodiversity trends of the Cenozoic Caribbean Region : investigations of possible causes and issues of scale using a biostratigraphic database of corals, echinoids, bivalves, and gastropods William Gray Dean Follow this and additional works at: https://trace.tennessee.edu/utk_graddiss Recommended Citation Dean, William Gray, "Relative biodiversity trends of the Cenozoic Caribbean Region : investigations of possible causes and issues of scale using a biostratigraphic database of corals, echinoids, bivalves, and gastropods. " PhD diss., University of Tennessee, 2003. https://trace.tennessee.edu/utk_graddiss/5124 This Dissertation is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a dissertation written by William Gray Dean entitled "Relative biodiversity trends of the Cenozoic Caribbean Region : investigations of possible causes and issues of scale using a biostratigraphic database of corals, echinoids, bivalves, and gastropods." I have examined the final electronic copy of this dissertation for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for -
Paleontología Mexicana ISSN (Revista Impresa): 0185-478X ISSN (Revista Electrónica): 2007-5189 Número De Certificado De Licitud De Título: No
DATOS Paleontología Mexicana • Año 3 • Número 65 (versión impresa) • Volumen 4 (versión electrónica) • Febrero 2015 Título: Paleontología Mexicana ISSN (revista impresa): 0185-478X ISSN (revista electrónica): 2007-5189 Número de certificado de licitud de título: No. 04-2012-081311041800-203 Número de reserva de derechos al uso exclusivo del título: No. 04-2012-081311041800-203 Tipo de publicación: Periódica Periodicidad: Semestral Número de publicación: Volumen 65 Número 1 Fecha de publicación: Febrero 2015 Año de inicio de la publicación: 1956 Editada por: Universidad Nacional Autónoma de México, Ciudad Universitaria Domicilio: Instituto de Geología, UNAM, Ciudad Universitaria, Circuito de la Investigación Científica, Copilco El Alto, Coyoacán, 04360 México, D.F. Paleontología Mexicana, Año 3, Número 65 impreso, Volumen 4 electrónica, febrero 2015, es una publicación semestral editada por la Universidad Nacional Autónoma de México, Ciudad Universitaria, Delegación Coyoacán, C.P. 04510, México D. F., a través del Instituto de Geología, Circuito de la Investigación Científica, Copilco, El Alto, Coyoacán, 04510 México D.F., tel. 52 55 56224312 ext 178, http://www.geologia.unam.mx/igl/, [email protected]. Editor responsable Sergio R.S. Cevallos Ferriz. Reserva de derechos al uso exclusivo No. 04- 2012-081311041800-203, ISSN: 2007-5189. Responsable de la última actualización de este número, Instituto de Geología, UNAM, Denise Viridiana Hernández Villalva, Circuito de la Investigación Científica, Copilco El Alto, Coyoacan, 04510 México D.F., fecha de última modificación, 27 de febrero del 2015. Paleontología Mexicana • Año 3 • Número 65 (versión impresa) • Volumen 4 (versión electrónica) • Febrero 2015 Crinoides del Misisípico de la región de El Bísani, 2 noroeste del Estado de Sonora, México Blanca E. -
Adaptive Radiation
.11D, 14-4 ADAPTIVE RADIATION The soldier fish (Holocentrus rubrum), a species from Indo- 8.2 Adaptive Radiation 8.5 Types of Adaptive and Progressive Radiation Pacific Oceans that colonized the Mediterranean Sea after Occupation 8.6 Beyond the Adaptive construction of the Suez Canal was completed in 1869. (Illus- 8.2 Generalizations Model of Radiation tration by Stephen Price) 8.3 Examples of 8.7 Sources of Radiation Radiations from the in Dominant Groups Fossil Record Summary 8.4 Are Radiations Predictable? 159 160 ADAPTIVE RADIATION 8.i ADAPTIVE RADIATION AND explicable by these two not sharply distinct processes plus the factor of geographic isolation which may PROGRESSIVE OCCUPATION permit essential duplication of adaptive types by dif- ferent organisms in different regions. Mayr (1963, 663) defined adaptive radiation as "evo- lutionary divergence of members of a single phyletic Therefore, after speciation, the processes of adaptive line into a series of rather different niches or adaptive radiation and progressive occupation are fundamen- zones." An adaptive zone is simply a set of similar tal to our understanding of the increase in organismal ecological niches (Futuyma 1986). Earlier, Simpson diversity and are central to our knowledge of the 1953, 223) had made an admittedly vague distinction mechanisms resulting in the richness of life on earth. between adaptive radiation and progressive occu- Simpson was right in asserting that adaptive radi- pation: ation and progressive occupation are not clearly dis- tinct processes. In fact, they result largely from scien- So far as adaptive radiation can be distinguished from tists' attempts to pigeonhole parts of nature's progressive occupation of numerous [adaptive] continuum of change. -
Adec Preview Generated PDF File
Records of the Western Australian Museum 21: 157-165 (2002). The asterostomatid echinoid Antillaster from the Paradash Group (Middle Eocene) of the Nakhichevan Region of Azerbaijan Kenneth J. McNamaral and Oktay H. Melikov2 I Department of Earth and Planetary Sciences, Western Australian Museum, Francis Street, Perth, Western Australia 6000, Australia 2 Azerbaijan State Oil Academy, 370102 Azadlik pr. 20, Baku, Azerbaijan Abstract - The asterostomatid echinoid Antillaster has previously been recorded only from the Caribbean region and northeastern South America. Here we report the first occurrence of this genus from outside the Americas, in the Lesser Caucasus, where it has been found in Middle Eocene sediments of the Paradash Group in the Nakhichevan region of Azerbaijan. The material is described as Antillaster bagmanovi sp. novo It is the earliest known occurrence of the genus. Its presence in the Paratethys, in a region far removed from previous known occurrences, has significant palaeobiogeographic implications. Its disappearance from the Lesser Caucasus, but persistence in the Caribbean, may be linked to the contraction of the Tethys during the Cenozoic. INTRODUCTION from Eocene to Miocene sediments in Venezuela, Eocene sediments in the Nakhichevan region of Cuba, Jamaica, Bonaire, Antigua, Puerto Rico and Azerbaijan have long attracted the attention of Mexico (ICier 1984). Here we report the first record many investigators, due to their good exposure and of this genus from outside the Caribbean region, in extensive foraminiferal and molluscan fauna. The Middle Eocene sediments of the Lesser Caucasus dating of the predominantly clay-sand facies as region in Azerbaijan. This provides the earliest being Eocene is based on this rich foraminiferal and record of asterostomatid echinoids in the Paratethys molluscan fauna (Azizbekov 1961; Bagmanov 1966, region. -
Sepkoski, J.J. 1992. Compendium of Fossil Marine Animal Families
MILWAUKEE PUBLIC MUSEUM Contributions . In BIOLOGY and GEOLOGY Number 83 March 1,1992 A Compendium of Fossil Marine Animal Families 2nd edition J. John Sepkoski, Jr. MILWAUKEE PUBLIC MUSEUM Contributions . In BIOLOGY and GEOLOGY Number 83 March 1,1992 A Compendium of Fossil Marine Animal Families 2nd edition J. John Sepkoski, Jr. Department of the Geophysical Sciences University of Chicago Chicago, Illinois 60637 Milwaukee Public Museum Contributions in Biology and Geology Rodney Watkins, Editor (Reviewer for this paper was P.M. Sheehan) This publication is priced at $25.00 and may be obtained by writing to the Museum Gift Shop, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233. Orders must also include $3.00 for shipping and handling ($4.00 for foreign destinations) and must be accompanied by money order or check drawn on U.S. bank. Money orders or checks should be made payable to the Milwaukee Public Museum. Wisconsin residents please add 5% sales tax. In addition, a diskette in ASCII format (DOS) containing the data in this publication is priced at $25.00. Diskettes should be ordered from the Geology Section, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233. Specify 3Y. inch or 5Y. inch diskette size when ordering. Checks or money orders for diskettes should be made payable to "GeologySection, Milwaukee Public Museum," and fees for shipping and handling included as stated above. Profits support the research effort of the GeologySection. ISBN 0-89326-168-8 ©1992Milwaukee Public Museum Sponsored by Milwaukee County Contents Abstract ....... 1 Introduction.. ... 2 Stratigraphic codes. 8 The Compendium 14 Actinopoda. -
7Ec6-47C3-9C8f-5F7c78bb7fdb.Txt
Dépôt Institutionnel de l’Université libre de Bruxelles / Université libre de Bruxelles Institutional Repository Thèse de doctorat/ PhD Thesis Citation APA: Rolet, G. (2012). Structure et rôle du caecum gastrique des échinides détritivores: étude particulière d'Echinocardium cordatum, Echinoidea: Spatangoida (Unpublished doctoral dissertation). Université libre de Bruxelles, Faculté des Sciences – Sciences biologiques, Bruxelles. Disponible à / Available at permalink : https://dipot.ulb.ac.be/dspace/bitstream/2013/209654/5/c258d843-7ec6-47c3-9c8f-5f7c78bb7fdb.txt (English version below) Cette thèse de doctorat a été numérisée par l’Université libre de Bruxelles. L’auteur qui s’opposerait à sa mise en ligne dans DI-fusion est invité à prendre contact avec l’Université ([email protected]). Dans le cas où une version électronique native de la thèse existe, l’Université ne peut garantir que la présente version numérisée soit identique à la version électronique native, ni qu’elle soit la version officielle définitive de la thèse. DI-fusion, le Dépôt Institutionnel de l’Université libre de Bruxelles, recueille la production scientifique de l’Université, mise à disposition en libre accès autant que possible. Les œuvres accessibles dans DI-fusion sont protégées par la législation belge relative aux droits d'auteur et aux droits voisins. Toute personne peut, sans avoir à demander l’autorisation de l’auteur ou de l’ayant-droit, à des fins d’usage privé ou à des fins d’illustration de l’enseignement ou de recherche scientifique, dans la mesure justifiée par le but non lucratif poursuivi, lire, télécharger ou reproduire sur papier ou sur tout autre support, les articles ou des fragments d’autres œuvres, disponibles dans DI-fusion, pour autant que : - Le nom des auteurs, le titre et la référence bibliographique complète soient cités; - L’identifiant unique attribué aux métadonnées dans DI-fusion (permalink) soit indiqué; - Le contenu ne soit pas modifié. -
Of Living and Fossil Echinoids 1924-1970
Index of Living and Fossil Echinoids 1924-1970 PORTER M. KIER and MARY HURD LAWSON SMITHSONIAN CONTRIBUTIONS TO PALEOBIOLOGY NUMBER 34 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
A Total-Evidence Dated Phylogeny of Echinoids and the Evolution of Body
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.947796; this version posted February 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 A Total-Evidence Dated Phylogeny of Echinoids and the Evolution of Body 2 Size across Adaptive Landscape 3 4 Nicolás Mongiardino Koch1* & Jeffrey R. Thompson2 5 1 Department of Geology & Geophysics, Yale University. 210 Whitney Ave., New Haven, CT 6 06511, USA 7 2 Research Department of Genetics, Evolution and Environment, University College London, 8 Darwin Building, Gower Street, London WC1E 6BT, UK 9 * Corresponding author. Email: [email protected]. Tel.: +1 (203) 432-3114. 10 Fax: +1 (203) 432-3134. 11 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.947796; this version posted February 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. MONGIARDINO KOCH & THOMPSON 12 Abstract 13 Several unique properties of echinoids (sea urchins) make them useful for exploring 14 macroevolutionary dynamics, including their remarkable fossil record that can be incorporated 15 into explicit phylogenetic hypotheses. However, this potential cannot be exploited without a 16 robust resolution of the echinoid tree of life. We revisit the phylogeny of crown group 17 Echinoidea using both the largest phylogenomic dataset compiled for the clade, as well as a 18 large-scale morphological matrix with a dense fossil sampling. -
Abejas Euglosinas (Hymenoptera: Apidae) De La Región Neotropical: Listado De Especies Con Notas Sobre Su Biología
BiotaRamírez, Colombiana Dressler 3 & (1) Ospina 7 - 118, 2002 Neotropical euglossine bees -7 Abejas euglosinas (Hymenoptera: Apidae) de la Región Neotropical: Listado de especies con notas sobre su biología Santiago Ramírez1, Robert L. Dressler2 y Mónica Ospina3 1Department of Organismic and Evolutionary Biology, 26 Oxford st., Harvard University, Cambridge, MA 02138. [email protected] 221305 NW 86th Ave. Micanopy, Fl. 32667. [email protected] 3Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Apartado Aéreo 8693, Bogotá D.C. – Colombia. [email protected] Palabras Clave: Euglossini, polinización de orquídeas, abejas de las orquídeas, Neotrópico, lista de especies A través de numerosas investigaciones, realizadas general en considerar la tribu Euglossini como grupo durante los últimos 40 años, varios aspectos sobre la biolo- monofilético (Kimsey 1982, 1987, Michener 1990, Engel 1999) gía de las abejas euglosinas han sido investigados intensa- sin embargo la posición filogenética de la tribu dentro del mente. Gracias a éste inusual interés se ha acumulado una grupo de abejas corbiculadas (Apinae) es incierta (Winston gran cantidad de información que hasta el momento perma- & Michener 1977, Kimsey 1987, Engel 1999, Cameron & nece dispersa; pues solo se han producido dos revisiones Mardulyn 2001 y referencias allí incluidas) al mismo tiempo parciales sobre éste grupo de abejas (Zucchi et al. 1969b, que las relaciones filogenéticas entre los géneros de la tri- Dressler 1982d) y desde ese entonces se han realizado nu- bu no son, aún, del todo claras (Kimsey 1982, 1987, Michener merosos trabajos adicionales. Por ésta razón se hace inmi- 1990, Engel 1999, Cameron & Mardulyn 2001).