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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Patrons De Biodiversité À L'échelle Globale Chez Les Dinoflagellés
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emerciements* ! Remerciements* A!l'issue!de!ce!travail!de!recherche!et!de!sa!rédaction,!j’ai!la!preuve!que!la!thèse!est!loin!d'être!un!travail! solitaire.! En! effet,! je! n'aurais! jamais! pu! réaliser! ce! travail! doctoral! sans! le! soutien! d'un! grand! nombre! de! personnes!dont!l’amitié,!la!générosité,!la!bonne!humeur%et%l'intérêt%manifestés%à%l'égard%de%ma%recherche%m'ont% permis!de!progresser!dans!cette!phase!délicate!de!«!l'apprentiGchercheur!».! -
Checklist of Mediterranean Free-Living Dinoflagellates Institutional Rate: € 938,-/Approx
Botanica Marina Vol. 46,2003, pp. 215-242 © 2003 by Walter de Gruyter • Berlin ■ New York Subscriptions Botanica Marina is published bimonthly. Annual subscription rate (Volume 46,2003) Checklist of Mediterranean Free-living Dinoflagellates Institutional rate: € 938,-/approx. SFr1 50 1 in the US and Canada US $ 938,-. Individual rate: € 118,-/approx. SFr 189,-; in the US and Canada US $ 118,-. Personal rates apply only when copies are sent to F. Gómez a private address and payment is made by a personal check or credit card. Personal subscriptions must not be donated to a library. Single issues: € 178,-/approx. SFr 285,-. All prices exclude postage. Department of Aquatic Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo 113-8657, Japan, [email protected] Orders Institutional subscription orders should be addressed to the publishers orto your usual subscription agent. Individual subscrip tion orders must be sent directly to one of the addresses indicated below. The Americas: An annotated checklist of the free-living dinoflagellates (Dinophyceae) of the Mediterranean Sea, based on Walter de Gruyter, Inc., 200 Saw Mill River Road, Hawthorne, N.Y. 10532, USA, Tel. 914-747-0110, Fax 914-747-1326, literature records, is given. The distribution of 673 species in 9 Mediterranean sub-basins is reported. The e-mail: [email protected]. number of taxa among the sub-basins was as follows: Ligurian (496 species), Balear-Provençal (360), Adri Australia and New Zealand: atic (322), Tyrrhenian (284), Ionian (283), Levantine (268), Aegean (182), Alborán (179) and Algerian Seas D. A. Information Services, 648 Whitehorse Road, P.O. -
Scrippsiella Trochoidea (F.Stein) A.R.Loebl
MOLECULAR DIVERSITY AND PHYLOGENY OF THE CALCAREOUS DINOPHYTES (THORACOSPHAERACEAE, PERIDINIALES) Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) der Fakultät für Biologie der Ludwig-Maximilians-Universität München zur Begutachtung vorgelegt von Sylvia Söhner München, im Februar 2013 Erster Gutachter: PD Dr. Marc Gottschling Zweiter Gutachter: Prof. Dr. Susanne Renner Tag der mündlichen Prüfung: 06. Juni 2013 “IF THERE IS LIFE ON MARS, IT MAY BE DISAPPOINTINGLY ORDINARY COMPARED TO SOME BIZARRE EARTHLINGS.” Geoff McFadden 1999, NATURE 1 !"#$%&'(&)'*!%*!+! +"!,-"!'-.&/%)$"-"!0'* 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2& ")3*'4$%/5%6%*!+1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7! 8,#$0)"!0'*+&9&6"*,+)-08!+ 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 :! 5%*%-"$&0*!-'/,)!0'* 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 ;! "#$!%"&'(!)*+&,!-!"#$!'./+,#(0$1$!2! './+,#(0$1$!-!3+*,#+4+).014!1/'!3+4$0&41*!041%%.5.01".+/! 67! './+,#(0$1$!-!/&"*.".+/!1/'!4.5$%"(4$! 68! ./!5+0&%!-!"#$!"#+*10+%,#1$*10$1$! 69! "#+*10+%,#1$*10$1$!-!5+%%.4!1/'!$:"1/"!'.;$*%."(! 6<! 3+4$0&41*!,#(4+)$/(!-!0#144$/)$!1/'!0#1/0$! 6=! 1.3%!+5!"#$!"#$%.%! 62! /0+),++0'* 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111<=! -
Taxonomic Clarification of the Dinophyte Peridinium Acuminatum Ehrenb., ≡ Scrippsiella Acuminata, Comb
Phytotaxa 220 (3): 239–256 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.220.3.3 Taxonomic clarification of the dinophyte Peridinium acuminatum Ehrenb., ≡ Scrippsiella acuminata, comb. nov. (Thoracosphaeraceae, Peridiniales) JULIANE KRETSCHMANN1, MALTE ELBRÄCHTER2, CARMEN ZINSSMEISTER1,3, SYLVIA SOEHNER1, MONIKA KIRSCH4, WOLF-HENNING KUSBER5 & MARC GOTTSCHLING1,* 1 Department Biologie, Systematische Botanik und Mykologie, GeoBio-Center, Ludwig-Maximilians-Universität München, Menzinger Str. 67, D – 80638 München, Germany 2 Wattenmeerstation Sylt des Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Hafenstr. 43, D – 25992 List/Sylt, Germany 3 Senckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB), Südstrand 44, D – 26382 Wilhelmshaven, Germany 4 Universität Bremen, Fachbereich Geowissenschaften – Fachrichtung Historische Geologie/Paläontologie, Klagenfurter Straße, D – 28359 Bremen, Germany 5 Botanischer Garten und Botanisches Museum Berlin-Dahlem, Freie Universität Berlin, Königin-Luise-Straße 6-8, D – 14195 Berlin, Germany * Corresponding author (E-mail: [email protected]) Abstract Peridinium acuminatum (Peridiniales, Dinophyceae) was described in the first half of the 19th century, but the name has been rarely adopted since then. It was used as type of Goniodoma, Heteraulacus and Yesevius, providing various sources of nomenclatural and taxonomic confusion. Particularly, several early authors emphasised that the organisms investigated by C.G. Ehrenberg and S.F.N.R. von Stein were not conspecific, but did not perform the necessary taxonomic conclusions. The holotype of P. acuminatum is an illustration dating back to 1834, which makes the determination of the species ambiguous. We collected, isolated, and cultivated Scrippsiella acuminata, comb. -
Origin and Evolution of Dinoflagellates with a Diatom Endosymbiont
Title Origin and Evolution of Dinoflagellates with a Diatom Endosymbiont Author(s) Horiguchi, Takeo Citation Edited by Shunsuke F. Mawatari, Hisatake Okada., 53-59 Issue Date 2004 Doc URL http://hdl.handle.net/2115/38506 Type proceedings International Symposium on "Dawn of a New Natural History - Integration of Geoscience and Biodiversity Studies". 5- Note 6 March 2004. Sapporo, Japan. File Information p53-59-neo-science.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Origin and Evolution of Dinoflagellates with a Diatom Endosymbiont Takeo Horiguchi Division of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo 060-0810, Japan ABSTRACT The origin and evolutionary scenario of a small group of dinoflagellates with unusual chloroplasts are discussed. These dinoflagellates are known to possess an endosymbiotic alga of diatom origin. These are Durinskia baltica, Kryptoperidinium foliaceum, Peridinium quinquecorne, Durinskia sp., Gymnodinium quadrilobatum, Peridiniopsis rhomboids, Dinothrix paradoxa and a new coccoid di- noflagellate from Palau (P-18 strain). Although these eight species share a similar type of endosym- biont, morphologically they are so diverse that they may be classified as different entities, even to the ordinal level, using the current taxonomic criteria. To investigate the origin(s) and phylogenetic affinities of these dinoflagellates, the SSU rRNA and rbcL genes of D. baltica, K foliaceum, Durinskia sp., Peridiniopsis rhomboids, Dinothrix paradoxa and P-18 strain were sequenced and analysed. Phylogenetic trees based on nuclear encoded SSU rRNA gene strongly suggested that all these endosymbiotic dinoflagellates are monophyletic. The phylogenetic analyses based on the plas- tid encoded rbcL gene also revealed that all the endosymbiotic algae formed a unique clade within the diatom clade. -
Plate Pattern Clarification of the Marine Dinophyte Heterocapsa Triquetra Sensu Stein (Dinophyceae) Collected at the Kiel Fjord (Germany)1
J. Phycol. 53, 1305–1324 (2017) © 2017 Phycological Society of America DOI: 10.1111/jpy.12584 PLATE PATTERN CLARIFICATION OF THE MARINE DINOPHYTE HETEROCAPSA TRIQUETRA SENSU STEIN (DINOPHYCEAE) COLLECTED AT THE KIEL FJORD (GERMANY)1 Urban Tillmann 2 Alfred Wegener Institut, Helmholz-Zentrum fur€ Polar- und Meeresforschung, Am Handelshafen 12, D – 27570, Bremerhaven, Germany Mona Hoppenrath2 Senckenberg am Meer, German Centre for Marine Biodiversity Research (DZMB), Sudstrand€ 44, D – 26382, Wilhelmshaven, Germany Marc Gottschling Department Biologie, Systematische Botanik und Mykologie, GeoBio-Center, Ludwig-Maximilians-Universit€at Munchen,€ Menzinger Str. 67, D – 80638, Munchen,€ Germany Wolf-Henning Kusber Botanischer Garten und Botanisches Museum Berlin-Dahlem, Freie Universit€at Berlin, Konigin-Luise-Straße€ 6-8, D – 14195, Berlin, Germany and Malte Elbrachter€ Wattenmeerstation Sylt des Alfred-Wegener-Institut, Helmholtz-Zentrum fur€ Polar- und Meeresforschung, Hafenstr. 43, D – 25992, List/Sylt, Germany One of the most common marine dinophytes is a 254–306 nm in diameter, had 6 ridges radiating from species known as Heterocapsa triquetra.WhenStein a central spine, 9 peripheral and 3 radiating spines, introduced the taxon Heterocapsa, he formally based and 12 peripheral bars as well as a central depression the type species H. triquetra on the basionym in the basal plate. Our work provides a clarification Glenodinium triquetrum. The latter was described by of morphological characters and a new, validly Ehrenberg and is most likely a species of published name for this important but yet formally Kryptoperidinium. In addition to that currently undescribed species of Heterocapsa: H. steinii sp. nov. unresolved nomenclatural situation, the thecal plate Key index words: H. -
A Review of Jurassic Dinoflagellate Cyst Biostratigraphy and Global Provincialism
THE LITERATURE ON TRIASSIC, JURASSIC AND EARLIEST CRETACEOUS DINOFLAGELLATE CYSTS (version #1 - May 2019) James B. Riding British Geological Survey, Keyworth, Nottingham NG12 5GG, United Kingdom Email: [email protected] The scientific literature on Trassic to earliest Cretaceous dinoflagellate cysts was first compiled by Riding (2012). Four supplements to this major compendium have subsequently been issued (Riding 2013, 2014, 2019a, 2019b). In each of these five publications, the relevant contributions on this topic, together with appropriate and descriptive keywords, were listed. A total of 1889 items were listed in order to provide interested parties with a complete inventory of the literature on this topic. Unfortunately 11 publications were mentioned twice, hence the remaining 1878 contributions are all itemised below in alphabetical/chronological order. The 391 contributions which are considered to be of major significance are asterisked. Should future supplements on this subject be published, the relevant articles in these will be added to this listing. This reference list has been edited specifically for this webpage, but there are some minor variations, for example digital object identifier (doi) numbers were only included in the latest four compilations (Riding 2014, 2018, 2019a, 2019b), and not in Riding (2012, 2013). References Riding JB. 2012. A compilation and review of the literature on Triassic, Jurassic, and earliest Cretaceous dinoflagellate cysts. American Association of Stratigraphic Palynologists Contributions Series, No. 46, 119 p. plus CD ROM. Riding JB. 2013. The literature on Triassic, Jurassic and earliest Cretaceous dinoflagellate cysts: supplement 1. Palynology, 37: 345–354. Riding JB. 2014. The literature on Triassic, Jurassic and earliest Cretaceous dinoflagellate cysts: supplement 2. -
Fresh-Water Dinoflagellates of Maryland
Fresh-water dinoflagellates of Maryland Item Type monograph Authors Thompson, R.H. Publisher Chesapeake Biological Laboratory Download date 30/09/2021 20:59:47 Link to Item http://hdl.handle.net/1834/28804 FRESH-WATER DINOFLAGELLATES OF MARYLAND I ;-. K. H. THOMPSON May, 1947 Publication No. 67 I CHESAPEAKE BIOLOGICAL LABORATORY Solomows Island, Maryland State of Maryland DEPARTMENT OF RESEARCH AND EDUCATIOK Corn missz'on ers : B. H. Willier, Chairntan ....................................................................................... Baltimore H. R. Bassett ........................................................................................................ Crisfield &I-oyd M. Bertholf ................ ................................................................................ Westminster E. N. Cory.......................................................................................................... Clege Park Franklin D. IIay..: .......................................................................................... CentreviIle Director: R. V. Truitt...................................................................... -. ......................... Solomons Island State Weather Service : G. N. Brancato, Meteorologist in Charge ........................................................... .... ....................... Baltimore Chesapeake Biological Laboratory : Edwin M. Barry, B. S., Education Assistant 6. F. Beaven, M. A., Biologist I, Oyster Inwestigations Coit M. Coker, M. A., Biologist II, Fishery Investigations Alice -
Title RECENT THECATE and FOSSILIZED
RECENT THECATE AND FOSSILIZED Title DINOFLAGELLATES OFF HACHINOHE COAST, NORTHEASTERN JAPAN Author(s) Matsuoka, Kazumi PUBLICATIONS OF THE SETO MARINE BIOLOGICAL Citation LABORATORY (1976), 23(3-5): 351-369 Issue Date 1976-10-30 URL http://hdl.handle.net/2433/175931 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University RECENT THECATE AND FOSSILIZED DINOFLAGELLATES OFF HACillNOHE COAST, NORTHEASTERN JAPAN KAZUMI MATSUOKA Department of Biology, Osaka City University With Text-figures 1-2 and Plates I-IV Contents Introduction ............................................................................................................ 351 Methods of sampling and preparation ........................................................................... 352 Observations ............................................................................................................ 354 Discussions . 355 Systematic descriptions ............................................................................................. 358 References . 366 Introduction It has long been known that a few species of dinoflagellates such as Ceratium hirundinella produce cysts or resting spores at a certain stage of the life cycle (Huber and Nipkow, 1922 and 1923 in Sarjeant, 1974). The fact, on the other hand, that the dinoflagellates obtained from bottom sediments including hystrichospheres in a narrow sense are fossilized cyst forms is recently clarified by Evitt (1963) and others. On the bases of these knowledges, much has been added to the information -
Molecular Phylogeny of the Marine Planktonic Dinoflagellate Oxytoxum and Corythodinium (Peridiniales, Dinophyceae)
Acta Protozool. (2016) 55: 239–248 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.16.026.6095 PROTOZOOLOGICA Molecular Phylogeny of the Marine Planktonic Dinoflagellate Oxytoxum and Corythodinium (Peridiniales, Dinophyceae) Fernando GÓMEZ1, Kevin C. WAKEMAN2,a, Aika YAMAGUCHI3, Hisayoshi NOZAKI4 1 Carmen Campos Panisse 3, Puerto de Santa María, Spain; 2 Komaba International Building for Education and Research (KIBER), University of Tokyo, Tokyo, Japan; 3 Kobe University Research Center for Inland Seas, Kobe, Japan; 4 Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo, Japan; a Current address: Department of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, Japan Abstract. The dinoflagellate genera Oxytoxum and Corythodinium that account for more than fifty species are widespread in warm oceans. These genera have been considered synonyms and thecal plate designations varied among authors. Several planktonic and sand-dwelling genera have been placed within the Oxytoxaceae. We obtained the first molecular data based on small subunit (SSU) rRNA gene sequences of Oxytoxum and Corythodinium, including the type species (O. scolopax and C. tessellatum) and C. frenguellii and C. cristatum. The three species of Corythodinium branched together a strong support [bootstrap (BP) of 98%]. This formed a sister clade with moderate support (BP 75%) with O. scolopax that supported the generic split. Oxytoxaceae should exclusively remain for Oxytoxum and Corythodinium, as an independent group, unrelated to any other known dinoflagellate. Oxytoxum was characterized by spindle-shaped cells with an anterior narrow epitheca, an apical spine and little cingular displacement. Corythodinium exhibits relatively broad cell shapes, with wider epitheca and greater cingular displacement, and an obovate or pentangular anterior sulcal plate that noticeably indented the epitheca. -
18S Rrna Gene Sequences of Leptocephalus Gut Contents
www.nature.com/scientificreports OPEN 18S rRNA gene sequences of leptocephalus gut contents, particulate organic matter, and biological oceanographic conditions in the western North Pacifc Tsuyoshi Watanabe1,8*, Satoshi Nagai2, Yoko Kawakami3, Taiga Asakura4, Jun Kikuchi4, Nobuharu Inaba5, Yukiko Taniuchi6, Hiroaki Kurogi2, Seinen Chow2, Tsutomu Tomoda7, Daisuke Ambe2 & Daisuke Hasegawa1 Eel larvae apparently feed on marine snow, but many aspects of their feeding ecology remain unknown. The eukaryotic 18S rRNA gene sequence compositions in the gut contents of four taxa of anguilliform eel larvae were compared with the sequence compositions of vertically sampled seawater particulate organic matter (POM) in the oligotrophic western North Pacifc Ocean. Both gut contents and POM were mainly composed of dinofagellates as well as other phytoplankton (cryptophytes and diatoms) and zooplankton (ciliophoran and copepod) sequences. Gut contents also contained cryptophyte and ciliophoran genera and a few other taxa. Dinofagellates (family Gymnodiniaceae) may be an important food source and these phytoplankton were predominant in gut contents and POM as evidenced by DNA analysis and phytoplankton cell counting. The compositions of the gut contents were not specifc to the species of eel larvae or the diferent sampling areas, and they were most similar to POM at the chlorophyll maximum in the upper part of the thermocline (mean depth: 112 m). Our results are consistent with eel larvae feeding on marine snow at a low trophic level, and feeding may frequently occur in the chlorophyll maximum in the western North Pacifc. Te Japanese eel, Anguilla japonica, is a catadromous fsh species with a spawning area at the West Mariana Ridge in the western North Pacifc1–4.