Origin and Evolution of Dinoflagellates with a Diatom Endosymbiont

Total Page:16

File Type:pdf, Size:1020Kb

Origin and Evolution of Dinoflagellates with a Diatom Endosymbiont Title Origin and Evolution of Dinoflagellates with a Diatom Endosymbiont Author(s) Horiguchi, Takeo Citation Edited by Shunsuke F. Mawatari, Hisatake Okada., 53-59 Issue Date 2004 Doc URL http://hdl.handle.net/2115/38506 Type proceedings International Symposium on "Dawn of a New Natural History - Integration of Geoscience and Biodiversity Studies". 5- Note 6 March 2004. Sapporo, Japan. File Information p53-59-neo-science.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Origin and Evolution of Dinoflagellates with a Diatom Endosymbiont Takeo Horiguchi Division of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo 060-0810, Japan ABSTRACT The origin and evolutionary scenario of a small group of dinoflagellates with unusual chloroplasts are discussed. These dinoflagellates are known to possess an endosymbiotic alga of diatom origin. These are Durinskia baltica, Kryptoperidinium foliaceum, Peridinium quinquecorne, Durinskia sp., Gymnodinium quadrilobatum, Peridiniopsis rhomboids, Dinothrix paradoxa and a new coccoid di- noflagellate from Palau (P-18 strain). Although these eight species share a similar type of endosym- biont, morphologically they are so diverse that they may be classified as different entities, even to the ordinal level, using the current taxonomic criteria. To investigate the origin(s) and phylogenetic affinities of these dinoflagellates, the SSU rRNA and rbcL genes of D. baltica, K foliaceum, Durinskia sp., Peridiniopsis rhomboids, Dinothrix paradoxa and P-18 strain were sequenced and analysed. Phylogenetic trees based on nuclear encoded SSU rRNA gene strongly suggested that all these endosymbiotic dinoflagellates are monophyletic. The phylogenetic analyses based on the plas- tid encoded rbcL gene also revealed that all the endosymbiotic algae formed a unique clade within the diatom clade. Therefore, the acquisition of the endosymbiont took place only once and species diversified later. Of the diatoms included in the alignment, a pennate diatom, Nitzschia longissima var. reversa (Bacillariaceae) was shown to be the closest relative of the dinoflagellate endosymbionts. According to the fossil record, the members of the genus Nitzschia first appeared in Late Oligocene to Early Miocene and therefore, establishment of this endosymbiotic event must have been post this era. The evolutionary scenario of these dinoflagellates after establishment of the endosymbiont has been presented. Keywords: Chloroplast, Diatom, Dinoflagellate, Endosymbiosis, Eyespot types and these different types of chloroplasts are INTRODUCTION thought to have been derived from different endo- The dinoflagellates are a group of protists, com- symbiotic events [1]. prising extremely diverse (morphologically, cytologi- The origin and evolutionary scenario of one such cally and physiologically) assemblages. About half group of dinoflagellates with unusual chloroplasts of the dinoflagellate species are photosynthetic and will be dealt here. It is a relatively small group of di- their chloroplasts are characterized by 1) being tri- noflagellates known to possess an endosymbiotic ple membrane bound and 2) containing peridinin as alga of diatom origin. These include Durinskia a major xanthophyll, in addition to chlorophylls a/c. baltica [2], Kryptoperidinium foliaceum [3], Peridin- There are, however, exceptions to this rule. Some di- ium quinquecorne [4], Durinskia sp.[5], Gymnodin- noflagellates possess chloroplasts of totally different ium quadrilobatum [6], and Dinothrix paradoxa [7]. Mawatari, S. F. & Okada, H. (eds.), Neo-Science of Natural History: Integration of Geoscience and Biodiversity Stud- ies, Proceedings of International Symposium on "Dawn of a New Natural History - Integration of Geoscience and Biodiversity Studies", March 5-6, 2004, Sapporo, pp. 53-59. 54 T. Horiguchi In these organisms, the dinoflagellate cytoplasm and Kryptoperidinium foliaceum (Stein) Lindemann the endosymbiont cytoplasm are separated by a sin- (order Peridiniales) Fig. lc gle unit membrane. The endosymbiont cytoplasm is A highly flattened, motile marine dinoflagellate. rather simple and includes only a nucleus, chloro- This is also a well known species as a diatom-har- plasts and mitochondria [2]. The host-endosymbiont boring dinoflagellate and extensively studied just relationship is a permanent one as it is no longer like D. baltica. The thecal plate arrangement is: Po, possible to separate these two cellular components. x, 4', 2a, 7", 5c, 5s, 5"', 2"". This thecal plate ar- Although these six species share a similar type of en- rangement is quite similar to that of Durinskia. How- dosymbiont, morphologically they are so diverse ever, the number of precingular plates is different (7 that they may be classified as different entities, even vs. 6) [3, 9-11, 13-14, 15]. The strain used in this to the ordinal level, using the present taxonomic study is from culture collection of UTEX. system. To investigate the origin(s) and phyloge- netic affinities of these dinoflagellates, the SSU Peridinium quinquecorne Abe (order Peridinia- rRNA and rbcL genes of D. baltica, K. foliaceum, les) Fig. ld Durinskia sp. and Dinothrix paradoxa were se- A characteristic motile dinoflagellate with promi- quenced and analysed. The same genes in a non- nent antapical spines. The thecal plate arrangement motile, coccoid, dinoflagellate with a similar endo- is: Po, x, 3', 2a, 7", 5c, 4s, 5"', 2"". Unfortunate- symbiont from Palau (P18 strain, a new taxon) and a ly, it has not been possible to sequence this species freshwater, bloom-forming dinoflagellate, Perid- to date. This species has been found from many iniopsis rhomboides were also analysed. places along Japanese coast, including Lake Hamana. RESULTS AND DISCUSSION Peridiniopsis rhomboides Krakhmalny (order Pe- Diversity of Dinoflagellates with a Diatom Endo- ridiniales) Fig. le symbiont This species was found to produce blooms in a The following eight species are now recognized freshwater pond in Toyama Prefecture, central Japan as the dinoflagellates with a diatom endosymbiont. in the spring/summer of the year 2003. The thecal Although it is not the aim of this paper to go into de- plate arrangement is: Po, x, 4', Oa, 6", ?c. ?s, 5"', tails of each species, they are briefly described. 2"". Although we have identified the species as P. rhomboides, its identity needs further study, because Durinskia baltica (Levander) Carty et Cox (order this species is closely related to the species such as Peridiniales) Fig. la Peridiniopsis kevei Grigorszky et al. [ 16] and P. co- Small motile dinoflagellate belonging to the order rillionii Leitao et al. [17] Peridiniales. This is a type species of the genus. The- cal plate arrangement is: Po, x, 4', 2a, 6", 5c, 4s, Gymnodinium quadrilobatum Horiguchi et Pi- 5"', 2"". We found the species both from marine enaar (order Phytodiniales?) Fig. if (Okinawa) and freshwater (Hokkaido) environ- This species has been described from beach sand ments. This is a well known species as a diatom-har- from subtropical Indian Ocean coast of South boring dinoflagellate and extensively studied [2, Africa. This species has also been found from mud 8-12]. of mangrove river in Iriomote Island, Japan. It is characterized by four-leaved-clover like non-motile Durinskia sp. (order Peridiniales) Fig. lb cell. The non-motile cell is dominant in life cycle. It This species has been found from the tide pools reproduces asexually by forming two motile cells. in several localities in South Africa, especially along The motile cell is athecate and Gymnodinium-like in the Cape coast. Thecal plate arrangement is: Po, x, morphology. This is why Horiguchi and Pienaar [5] 4', 2a, 6", 5c, 5s, 5"', 2"". Although the thecal described it as a new species of the genus Gym- plate arrangement is almost same as that of the type nodinium, rather than creating a new genus based on species, gross morphology is very different from the its unique vegetative morphology. However, now latter and therefore, we believe it is a new species. the genus Gymnodinium is strictly defined [ 18] and The formal description of the species is now in the motile cell of this species does not fit the recent preparation. definition of the genus Gymnodinium. Here I tenta- tively treat this species as a member of the order Phytodiniales, which is characterized by having Dinoflagellates with a Diatom Endosymbiont 55 b c d I. 9 MIMPIFIRINIPP— - Fig. 1 Dinoflagellates with a diatom endosymbiont. a. Durinskia baltica, b. Durinskia sp. c. Kryptoperidinium foliaceum, d. Pe- ridinium quinquecorne, e. Peridiniopsis rhomboids, f. Gymnodinium quadrilobatum, g. P-18 strain from Palau, h. Dinothrix paradoxa. Scale bars = 10 ,um dominant non-motile vegetative stage. Unfortunate- cells. The motile cell is athecate. The motile cell di- ly, we have not been able to sequence this species to rectly returns to the non-motile vegetative form. date. This species is probably a new genus and a species (manuscript in preparation). P-18 strain (order Phytodiniales) Fig. lg This newly isolated strain from the bottom sand Dinothrix paradoxa Pascher (order Dinotrichales, of the Jellyfish Lake, Palau, possesses very unique or family Dinocloniaceae, order Phytodiniales) vegetative form. It is helmet-shaped and firmly at- Fig. lh taches to the substratum. The dominant stage in life This dinoflagellate is characteristic because it has cycle is this non-motile, attached form. It repro- pseudo-filamentous form, which consists
Recommended publications
  • Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
    Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed.
    [Show full text]
  • The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
    National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service.
    [Show full text]
  • The Diatoms Big Significance of Tiny Glass Houses
    GENERAL ¨ ARTICLE The Diatoms Big Significance of Tiny Glass Houses Aditi Kale and Balasubramanian Karthick Diatoms are unique microscopic algae having intricate cell walls made up of silica. They are the major phytoplankton in aquatic ecosystems and account for 20–25% of the oxygen release and carbon fixation in the world. Their most charac- teristic features are mechanisms they have evolved to utilize silica. Due to their distinctive adaptations and ecology, they (left) Aditi Kale is a PhD student with the are used in various fields like biomonitoring, paleoecology, Biodiversity and nanotechnology and forensics. Paleobiology group of Agharkar Research Introduction Institute. She is studying the biogeography of Diatoms (Class: Bacillariophyceae) are unique microscopic al- freshwater diatoms in gae containing silica and having distinct geometrical shapes. Western Ghats for her They are unicellular, eukaryotic and photosynthetic organisms. thesis. Their cell size ranges between 5 µm–0.5 mm. They occur in wet (right) Balasubramanian or moist places where photosynthesis is possible. Diatoms are Karthick is Scientist with Biodiversity and either planktonic (free-floating) or benthic (attached to a substra- Paleobiology group of tum) in Nature (Figure 1). The individuals are solitary or some- Agharkar Research times form colonies. Diatoms are mostly non-motile; however, Institute. His interests some benthic diatoms have a specialized raphe system1 that include diatom taxonomy and ecology, microbial secretes mucilage to attach or glide along a surface. They are also biogeography,andaquatic known to form biofilms, i. e., layers of tightly attached cells of ecology. microorganisms. Biofilms are formed on a solid surface and are often surrounded by extra-cellular fluids.
    [Show full text]
  • Diatoms Shape the Biogeography of Heterotrophic Prokaryotes in Early Spring in the Southern Ocean
    Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean Yan Liu, Pavla Debeljak, Mathieu Rembauville, Stéphane Blain, Ingrid Obernosterer To cite this version: Yan Liu, Pavla Debeljak, Mathieu Rembauville, Stéphane Blain, Ingrid Obernosterer. Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2019, 21 (4), pp.1452-1465. 10.1111/1462-2920.14579. hal-02383818 HAL Id: hal-02383818 https://hal.archives-ouvertes.fr/hal-02383818 Submitted on 28 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Diatoms shape the biogeography of heterotrophic prokaryotes in early spring in the Southern Ocean 5 Yan Liu1, Pavla Debeljak1,2, Mathieu Rembauville1, Stéphane Blain1, Ingrid Obernosterer1* 1 Sorbonne Université, CNRS, Laboratoire d'Océanographie Microbienne, LOMIC, F-66650 10 Banyuls-sur-Mer, France 2 Department of Limnology and Bio-Oceanography, University of Vienna, A-1090 Vienna, Austria
    [Show full text]
  • Patrons De Biodiversité À L'échelle Globale Chez Les Dinoflagellés
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emerciements* ! Remerciements* A!l'issue!de!ce!travail!de!recherche!et!de!sa!rédaction,!j’ai!la!preuve!que!la!thèse!est!loin!d'être!un!travail! solitaire.! En! effet,! je! n'aurais! jamais! pu! réaliser! ce! travail! doctoral! sans! le! soutien! d'un! grand! nombre! de! personnes!dont!l’amitié,!la!générosité,!la!bonne!humeur%et%l'intérêt%manifestés%à%l'égard%de%ma%recherche%m'ont% permis!de!progresser!dans!cette!phase!délicate!de!«!l'apprentiGchercheur!».!
    [Show full text]
  • Akashiwo Sanguinea
    Ocean ORIGINAL ARTICLE and Coastal http://doi.org/10.1590/2675-2824069.20-004hmdja Research ISSN 2675-2824 Phytoplankton community in a tropical estuarine gradient after an exceptional harmful bloom of Akashiwo sanguinea (Dinophyceae) in the Todos os Santos Bay Helen Michelle de Jesus Affe1,2,* , Lorena Pedreira Conceição3,4 , Diogo Souza Bezerra Rocha5 , Luis Antônio de Oliveira Proença6 , José Marcos de Castro Nunes3,4 1 Universidade do Estado do Rio de Janeiro - Faculdade de Oceanografia (Bloco E - 900, Pavilhão João Lyra Filho, 4º andar, sala 4018, R. São Francisco Xavier, 524 - Maracanã - 20550-000 - Rio de Janeiro - RJ - Brazil) 2 Instituto Nacional de Pesquisas Espaciais/INPE - Rede Clima - Sub-rede Oceanos (Av. dos Astronautas, 1758. Jd. da Granja -12227-010 - São José dos Campos - SP - Brazil) 3 Universidade Estadual de Feira de Santana - Departamento de Ciências Biológicas - Programa de Pós-graduação em Botânica (Av. Transnordestina s/n - Novo Horizonte - 44036-900 - Feira de Santana - BA - Brazil) 4 Universidade Federal da Bahia - Instituto de Biologia - Laboratório de Algas Marinhas (Rua Barão de Jeremoabo, 668 - Campus de Ondina 40170-115 - Salvador - BA - Brazil) 5 Instituto Internacional para Sustentabilidade - (Estr. Dona Castorina, 124 - Jardim Botânico - 22460-320 - Rio de Janeiro - RJ - Brazil) 6 Instituto Federal de Santa Catarina (Av. Ver. Abrahão João Francisco, 3899 - Ressacada, Itajaí - 88307-303 - SC - Brazil) * Corresponding author: [email protected] ABSTRAct The objective of this study was to evaluate variations in the composition and abundance of the phytoplankton community after an exceptional harmful bloom of Akashiwo sanguinea that occurred in Todos os Santos Bay (BTS) in early March, 2007.
    [Show full text]
  • The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
    bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years.
    [Show full text]
  • Exploring Bacteria Diatom Associations Using Single-Cell
    Vol. 72: 73–88, 2014 AQUATIC MICROBIAL ECOLOGY Published online April 4 doi: 10.3354/ame01686 Aquat Microb Ecol FREEREE ACCESSCCESS Exploring bacteria–diatom associations using single-cell whole genome amplification Lydia J. Baker*, Paul F. Kemp Department of Oceanography, University of Hawai’i at Manoa, 1950 East West Road, Center for Microbial Oceanography: Research and Education (C-MORE), Honolulu, Hawai’i 96822, USA ABSTRACT: Diatoms are responsible for a large fraction of oceanic and freshwater biomass pro- duction and are critically important for sequestration of carbon to the deep ocean. As with most surfaces present in aquatic systems, bacteria colonize the exterior of diatom cells, and they inter- act with the diatom and each other. The ecology of diatoms may be better explained by conceptu- alizing them as composite organisms consisting of the host cell and its bacterial associates. Such associations could have collective properties that are not predictable from the properties of the host cell alone. Past studies of these associations have employed culture-based, whole-population methods. In contrast, we examined the composition and variability of bacterial assemblages attached to individual diatoms. Samples were collected in an oligotrophic system (Station ALOHA, 22° 45’ N, 158° 00’ W) at the deep chlorophyll maximum. Forty eukaryotic host cells were isolated by flow cytometry followed by multiple displacement amplification, including 26 Thalassiosira spp., other diatoms, dinoflagellates, coccolithophorids, and flagellates. Bacteria were identified by amplifying, cloning, and sequencing 16S rDNA using primers that select against chloroplast 16S rDNA. Bacterial sequences were recovered from 32 of 40 host cells, and from parallel samples of the free-living and particle-associated bacteria.
    [Show full text]
  • Checklist of Mediterranean Free-Living Dinoflagellates Institutional Rate: € 938,-/Approx
    Botanica Marina Vol. 46,2003, pp. 215-242 © 2003 by Walter de Gruyter • Berlin ■ New York Subscriptions Botanica Marina is published bimonthly. Annual subscription rate (Volume 46,2003) Checklist of Mediterranean Free-living Dinoflagellates Institutional rate: € 938,-/approx. SFr1 50 1 in the US and Canada US $ 938,-. Individual rate: € 118,-/approx. SFr 189,-; in the US and Canada US $ 118,-. Personal rates apply only when copies are sent to F. Gómez a private address and payment is made by a personal check or credit card. Personal subscriptions must not be donated to a library. Single issues: € 178,-/approx. SFr 285,-. All prices exclude postage. Department of Aquatic Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo 113-8657, Japan, [email protected] Orders Institutional subscription orders should be addressed to the publishers orto your usual subscription agent. Individual subscrip­ tion orders must be sent directly to one of the addresses indicated below. The Americas: An annotated checklist of the free-living dinoflagellates (Dinophyceae) of the Mediterranean Sea, based on Walter de Gruyter, Inc., 200 Saw Mill River Road, Hawthorne, N.Y. 10532, USA, Tel. 914-747-0110, Fax 914-747-1326, literature records, is given. The distribution of 673 species in 9 Mediterranean sub-basins is reported. The e-mail: [email protected]. number of taxa among the sub-basins was as follows: Ligurian (496 species), Balear-Provençal (360), Adri­ Australia and New Zealand: atic (322), Tyrrhenian (284), Ionian (283), Levantine (268), Aegean (182), Alborán (179) and Algerian Seas D. A. Information Services, 648 Whitehorse Road, P.O.
    [Show full text]
  • Marine Plankton Diatoms of the West Coast of North America
    MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. CUPP UNIVERSITY OF CALIFORNIA PRESS BERKELEY AND LOS ANGELES 1943 BULLETIN OF THE SCRIPPS INSTITUTION OF OCEANOGRAPHY OF THE UNIVERSITY OF CALIFORNIA LA JOLLA, CALIFORNIA EDITORS: H. U. SVERDRUP, R. H. FLEMING, L. H. MILLER, C. E. ZoBELL Volume 5, No.1, pp. 1-238, plates 1-5, 168 text figures Submitted by editors December 26,1940 Issued March 13, 1943 Price, $2.50 UNIVERSITY OF CALIFORNIA PRESS BERKELEY, CALIFORNIA _____________ CAMBRIDGE UNIVERSITY PRESS LONDON, ENGLAND [CONTRIBUTION FROM THE SCRIPPS INSTITUTION OF OCEANOGRAPHY, NEW SERIES, No. 190] PRINTED IN THE UNITED STATES OF AMERICA Taxonomy and taxonomic names change over time. The names and taxonomic scheme used in this work have not been updated from the original date of publication. The published literature on marine diatoms should be consulted to ensure the use of current and correct taxonomic names of diatoms. CONTENTS PAGE Introduction 1 General Discussion 2 Characteristics of Diatoms and Their Relationship to Other Classes of Algae 2 Structure of Diatoms 3 Frustule 3 Protoplast 13 Biology of Diatoms 16 Reproduction 16 Colony Formation and the Secretion of Mucus 20 Movement of Diatoms 20 Adaptations for Flotation 22 Occurrence and Distribution of Diatoms in the Ocean 22 Associations of Diatoms with Other Organisms 24 Physiology of Diatoms 26 Nutrition 26 Environmental Factors Limiting Phytoplankton Production and Populations 27 Importance of Diatoms as a Source of food in the Sea 29 Collection and Preparation of Diatoms for Examination 29 Preparation for Examination 30 Methods of Illustration 33 Classification 33 Key 34 Centricae 39 Pennatae 172 Literature Cited 209 Plates 223 Index to Genera and Species 235 MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E.
    [Show full text]
  • Flagellates, Ciliates) and Bacteria in Lake Kinneret, Israel
    AQUATIC MICROBIAL ECOLOGY Published February 13 Aquat Microb Ecol Seasonal abundance and vertical distribution of Protozoa (flagellates, ciliates) and bacteria in Lake Kinneret, Israel Ora Hadas*, Tom Berman Israel Oceanographic & Limnological Research, The Yigal Allon Kinneret Limnological Laboratory, PO Box 345, Tiberias 14102, Israel ABSTRACT: The seasonal and vertical abundances of ciliates and flagellates are described over a 2 yr period in Lake Kinneret, Israel, a warm rneso-eutroph~cmonomictic lake. Ciliate numbers ranged from 3 to 47 cells ml-l. At the thermocline and oxycline region, the h~ghestcillate numbers were observed in autumn, with Coleps hirtus as the dominant speclea. Maximum heterotrophic nanoflagellate abun- dance (1300 cells ml") was found in the epilimnion In winter-spnng, minimum numbers (66 cells ml-') occurred in autumn. Bacteria ranged from 10ho 3 10' cells ml-l with h~ghestnumbers at the decline of the Peridinium yatunense bloom and the lowest during ivlnter. Protozoa, especially ciliates, appeared to be important food sources for metazooplankton. Top-down control is an important factor determin- ing the structure of the microbial loop in Lake Kinneret. KEY WORDS: HNAN Ciliates . Bacteria . Lake Kinneret INTRODUCTION for zooplankton in both marine and aquatic environ- ments (Beaver & Crisman 1989, Pace et al. 1990, The abundance and distribution of microorganisms Stoecker & Capuzzo 1990). in aquatic ecosystems result from a complex of envi- The abundance of each component within the ronmental factors and trophic interactions among a microbial loop, i.e. bacteria, picophytoplankton, fla- multitude of biotic components. In lakes, as in the gellates and ciliates, is controlled by some combina- marine habitat, important fluxes of carbon nutrients tion of bottom-up (nutrient supply) and top-down and energy are mediated by the microbial food web (grazing) regulation.
    [Show full text]
  • Biotic and Abiotic Factors Affecting the Population Dynamics of Ceratium
    diversity Article Biotic and Abiotic Factors Affecting the Population Dynamics of Ceratium hirundinella, Peridinium cinctum, and Peridiniopsis elpatiewskyi Behrouz Zarei Darki 1,* and Alexandr F. Krakhmalnyi 2 1 Department of Marine Biology, Faculty of Marine Sciences, Tarbiat Modares University, Noor 46417-76489, Mazandaran Province, Iran 2 Institute for Evolutionary Ecology, NAS of Ukraine, 37, Lebedeva St., 03143 Kiev, Ukraine * Correspondence: [email protected] Received: 23 July 2019; Accepted: 2 August 2019; Published: 15 August 2019 Abstract: The present research was conducted to assess the impact of abiotic and biotic factors on the growth of freshwater dinoflagellates such as Ceratium hirundinella, Peridinium cinctum, and Peridiniopsis elpatiewskyi, which reduce the quality of drinking water in the Zayandeh Rud Reservoir. To this end, 152 algal and zoological samples were collected from the reservoir located in the Central part of Iran in January, April, July, and October 2011. Abiotic factors such as pH, temperature, conductivity, transparency, dissolved oxygen, and nutrient concentration of the water were measured in all study stations. The results showed that the population dynamics of dinoflagellates in the Zayandeh Rud Reservoir was different depending on season, station, and depth. The findings proved that C. hirundinella was one of the dominant autumn planktons in the highest biovolume in the Zayandeh Rud Reservoir. While P. elpatiewskyi was present in the reservoir throughout a year with biovolume peak in summer. Accompanying bloom of P. elpatiewskyi and C. hirundinella, P. cinctum also grew in well-heated summer and autumn waters. It was further found that Ceratium density was positively correlated with sulfate ion concentrations, while the growth of P.
    [Show full text]