RESEARCH ARTICLE The Prop1-like homeobox gene unc-42 specifies the identity of synaptically connected neurons Emily G Berghoff1, Lori Glenwinkel1, Abhishek Bhattacharya1, HaoSheng Sun1, Erdem Varol2, Nicki Mohammadi1, Amelia Antone1, Yi Feng1, Ken Nguyen3, Steven J Cook1, Jordan F Wood4, Neda Masoudi1, Cyril C Cros1, Yasmin H Ramadan1, Denise M Ferkey4, David H Hall3, Oliver Hobert1* 1Department of Biological Sciences, Columbia University, Howard Hughes Medical Institute, New York, United States; 2Department of Statistics, Zuckerman Institute, Columbia University, New York, United States; 3Dominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, United States; 4Department of Biological Sciences, University at Buffalo, The State University of New York, Buffalo, United States Abstract Many neuronal identity regulators are expressed in distinct populations of cells in the nervous system, but their function is often analyzed only in specific isolated cellular contexts, thereby potentially leaving overarching themes in gene function undiscovered. We show here that the Caenorhabditis elegans Prop1-like homeobox gene unc-42 is expressed in 15 distinct sensory, inter- and motor neuron classes throughout the entire C. elegans nervous system. Strikingly, all 15 neuron classes expressing unc-42 are synaptically interconnected, prompting us to investigate whether unc-42 controls the functional properties of this circuit and perhaps also the assembly of these neurons into functional circuitry. We found that unc-42 defines the routes of communication between these interconnected neurons by controlling the expression of neurotransmitter pathway genes, neurotransmitter receptors, neuropeptides, and neuropeptide receptors. Anatomical *For correspondence: analysis of unc-42 mutant animals reveals defects in axon pathfinding and synaptic connectivity,
[email protected] paralleled by expression defects of molecules involved in axon pathfinding, cell-cell recognition, unc-42 Competing interest: See and synaptic connectivity.