Prdm8 Regulates Pmn Progenitor Specification for Motor Neuron And
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Prox1regulates the Subtype-Specific Development of Caudal Ganglionic
The Journal of Neuroscience, September 16, 2015 • 35(37):12869–12889 • 12869 Development/Plasticity/Repair Prox1 Regulates the Subtype-Specific Development of Caudal Ganglionic Eminence-Derived GABAergic Cortical Interneurons X Goichi Miyoshi,1 Allison Young,1 Timothy Petros,1 Theofanis Karayannis,1 Melissa McKenzie Chang,1 Alfonso Lavado,2 Tomohiko Iwano,3 Miho Nakajima,4 Hiroki Taniguchi,5 Z. Josh Huang,5 XNathaniel Heintz,4 Guillermo Oliver,2 Fumio Matsuzaki,3 Robert P. Machold,1 and Gord Fishell1 1Department of Neuroscience and Physiology, NYU Neuroscience Institute, Smilow Research Center, New York University School of Medicine, New York, New York 10016, 2Department of Genetics & Tumor Cell Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee 38105, 3Laboratory for Cell Asymmetry, RIKEN Center for Developmental Biology, Kobe 650-0047, Japan, 4Laboratory of Molecular Biology, Howard Hughes Medical Institute, GENSAT Project, The Rockefeller University, New York, New York 10065, and 5Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724 Neurogliaform (RELNϩ) and bipolar (VIPϩ) GABAergic interneurons of the mammalian cerebral cortex provide critical inhibition locally within the superficial layers. While these subtypes are known to originate from the embryonic caudal ganglionic eminence (CGE), the specific genetic programs that direct their positioning, maturation, and integration into the cortical network have not been eluci- dated. Here, we report that in mice expression of the transcription factor Prox1 is selectively maintained in postmitotic CGE-derived cortical interneuron precursors and that loss of Prox1 impairs the integration of these cells into superficial layers. Moreover, Prox1 differentially regulates the postnatal maturation of each specific subtype originating from the CGE (RELN, Calb2/VIP, and VIP). -
Cell Reprogramming Technologies for Treatment And
CELL REPROGRAMMING TECHNOLOGIES FOR TREATMENT AND UNDERSTANDING OF GENETIC DISORDERS OF MYELIN by ANGELA MARIE LAGER Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Thesis advisor: Paul J Tesar, PhD Department of Genetics and Genome Sciences CASE WESTERN RESERVE UNIVERSITY May 2015 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of Angela Marie Lager Candidate for the Doctor of Philosophy degree*. (signed) Ronald A Conlon, PhD (Committee Chair) Paul J Tesar, PhD (Advisor) Craig A Hodges, PhD Warren J Alilain, PhD (date) 31 March 2015 *We also certify that written approval has been obtained from any proprietary material contained therein. TABLE OF CONTENTS Table of Contents……………………………………………………………………….1 List of Figures……………………………………………………………………………4 Acknowledgements……………………………………………………………………..7 Abstract…………………………………………………………………………………..8 Chapter 1: Introduction and Background………………………………………..11 1.1 Overview of mammalian oligodendrocyte development in the spinal cord and myelination of the central nervous system…………………..11 1.1.1 Introduction……………………………………………………..11 1.1.2 The establishment of the neuroectoderm and ventral formation of the neural tube…………………………………..12 1.1.3 Ventral patterning of the neural tube and specification of the pMN domain in the spinal cord……………………………….15 1.1.4 Oligodendrocyte progenitor cell production through the process of gliogenesis ………………………………………..16 1.1.5 Oligodendrocyte progenitor cell to oligodendrocyte differentiation…………………………………………………...22 -
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Yildiz et al. Neural Development (2019) 14:5 https://doi.org/10.1186/s13064-019-0129-x RESEARCH ARTICLE Open Access Zebrafish prdm12b acts independently of nkx6.1 repression to promote eng1b expression in the neural tube p1 domain Ozge Yildiz1, Gerald B. Downes2 and Charles G. Sagerström1* Abstract Background: Functioning of the adult nervous system depends on the establishment of neural circuits during embryogenesis. In vertebrates, neurons that make up motor circuits form in distinct domains along the dorsoventral axis of the neural tube. Each domain is characterized by a unique combination of transcription factors (TFs) that promote a specific fate, while repressing fates of adjacent domains. The prdm12 TF is required for the expression of eng1b and the generation of V1 interneurons in the p1 domain, but the details of its function remain unclear. Methods: We used CRISPR/Cas9 to generate the first germline mutants for prdm12 and employed this resource, together with classical luciferase reporter assays and co-immunoprecipitation experiments, to study prdm12b function in zebrafish. We also generated germline mutants for bhlhe22 and nkx6.1 to examine how these TFs act with prdm12b to control p1 formation. Results: We find that prdm12b mutants lack eng1b expression in the p1 domain and also possess an abnormal touch-evoked escape response. Using luciferase reporter assays, we demonstrate that Prdm12b acts as a transcriptional repressor. We also show that the Bhlhe22 TF binds via the Prdm12b zinc finger domain to form a complex. However, bhlhe22 mutants display normal eng1b expression in the p1 domain. While prdm12 has been proposed to promote p1 fates by repressing expression of the nkx6.1 TF, we do not observe an expansion of the nkx6.1 domain upon loss of prdm12b function, nor is eng1b expression restored upon simultaneous loss of prdm12b and nkx6.1. -
CNS Myelin Paranodes Require Nkx6-2 Homeoprotein Transcriptional Activity for Normal Structure
The Journal of Neuroscience, December 15, 2004 • 24(50):11215–11225 • 11215 Development/Plasticity/Repair CNS Myelin Paranodes Require Nkx6-2 Homeoprotein Transcriptional Activity for Normal Structure Cherie Southwood,1,2 Chris He,1 James Garbern,2,4 John Kamholz,2,4 Edgardo Arroyo,5 and Alexander Gow1,2,3,4 1Brookdale Center for Molecular Biology, Mount Sinai School of Medicine, New York, New York, 10029, 2Center for Molecular Medicine and Genetics, 3Carman and Ann Adams Department of Pediatrics, 4Department of Neurology, Wayne State University School of Medicine, Detroit, Michigan, 48201, and 5Department of Neurology, University of Pennsylvania Medical Center, Philadelphia, Pennsylvania, 19104 Homeodomain proteins play critical roles during development in cell fate determination and proliferation, but few studies have defined gene regulatory networks for this class of transcription factors in differentiated cells. Using a lacZ-knock-in strategy to ablate Nkx6-2, we find that the Nkx6-2 promoter is active embryonically in neuroblasts and postnatally in oligodendrocytes. In addition to neurological deficits, we find widespread ultrastructural abnormalities in CNS white matter and aberrant expression of three genes encoding a paranodal microtubule destabilizing protein, stathmin 1, and the paranodal cell adhesion molecules neurofascin and contactin. The involvement of these downstream proteins in cytoskeletal function and cell adhesion reveals mechanisms whereby Nkx6-2 directly or indirectly regulates axon–glial interactions at myelin paranodes. Nkx6-2 does not appear to be the central regulator of axoglial junction assembly; nonetheless, our data constitute the first evidence of such a regulatory network and provide novel insights into the mechanism and effector molecules that are involved. -
Genome-Wide DNA Methylation Analysis of KRAS Mutant Cell Lines Ben Yi Tew1,5, Joel K
www.nature.com/scientificreports OPEN Genome-wide DNA methylation analysis of KRAS mutant cell lines Ben Yi Tew1,5, Joel K. Durand2,5, Kirsten L. Bryant2, Tikvah K. Hayes2, Sen Peng3, Nhan L. Tran4, Gerald C. Gooden1, David N. Buckley1, Channing J. Der2, Albert S. Baldwin2 ✉ & Bodour Salhia1 ✉ Oncogenic RAS mutations are associated with DNA methylation changes that alter gene expression to drive cancer. Recent studies suggest that DNA methylation changes may be stochastic in nature, while other groups propose distinct signaling pathways responsible for aberrant methylation. Better understanding of DNA methylation events associated with oncogenic KRAS expression could enhance therapeutic approaches. Here we analyzed the basal CpG methylation of 11 KRAS-mutant and dependent pancreatic cancer cell lines and observed strikingly similar methylation patterns. KRAS knockdown resulted in unique methylation changes with limited overlap between each cell line. In KRAS-mutant Pa16C pancreatic cancer cells, while KRAS knockdown resulted in over 8,000 diferentially methylated (DM) CpGs, treatment with the ERK1/2-selective inhibitor SCH772984 showed less than 40 DM CpGs, suggesting that ERK is not a broadly active driver of KRAS-associated DNA methylation. KRAS G12V overexpression in an isogenic lung model reveals >50,600 DM CpGs compared to non-transformed controls. In lung and pancreatic cells, gene ontology analyses of DM promoters show an enrichment for genes involved in diferentiation and development. Taken all together, KRAS-mediated DNA methylation are stochastic and independent of canonical downstream efector signaling. These epigenetically altered genes associated with KRAS expression could represent potential therapeutic targets in KRAS-driven cancer. Activating KRAS mutations can be found in nearly 25 percent of all cancers1. -
Pax6 During Visual System Development
Hedgehog-dependent E3-ligase Midline1 regulates ubiquitin-mediated proteasomal degradation of Pax6 during visual system development Thorsten Pfirrmanna,1, Enrico Jandta,1, Swantje Ranfta,b, Ashwin Lokapallya, Herbert Neuhausa, Muriel Perronc, and Thomas Hollemanna,2 aInstitute for Physiological Chemistry, University of Halle-Wittenberg, 06114 Halle, Germany; bGynecological Hospital, University Medical Center Mannheim, 68167 Mannheim, Germany; and cParis-Saclay Institute of Neuroscience, CNRS, Univ Paris Sud, Université Paris-Saclay, 91405 Orsay, France Edited by Richard M. Harland, University of California, Berkeley, CA, and approved July 19, 2016 (received for review January 16, 2016) Pax6 is a key transcription factor involved in eye, brain, and pancreas remains unclear how Pax6 protein is removed from the eyestalk development. Although pax6 is expressed in the whole prospective territory on time. Some authors report the regulation of Pax6 retinal field, subsequently its expression becomes restricted to the activity by posttranslational modifications (21–23), and most optic cup by reciprocal transcriptional repression of pax6 and pax2. interestingly, Tuoc et al. showed that in cortical progenitor cells, However, it remains unclear how Pax6 protein is removed from the Pax6 protein is degraded by the proteasome mediated by Trim11 eyestalk territory on time. Here, we report that Mid1, a member of (24). However, the existence of similar mechanisms leading to the RBCC/TRIM E3 ligase family, which was first identified in patients the development of the visual system is not known. with the X-chromosome–linked Opitz BBB/G (OS) syndrome, inter- The data of our present study show that Midline1 (Mid1) acts with Pax6. We found that the forming eyestalk is a major do- serves as one of these links. -
Transcription Factors Define the Neuroanatomical Organization Of
ORIGINAL RESEARCH ARTICLE published: 14 May 2013 NEUROANATOMY doi: 10.3389/fnana.2013.00007 Transcription factors define the neuroanatomical organization of the medullary reticular formation Paul A. Gray * Department of Anatomy and Neurobiology, Washington University School of Medicine, St. Louis, MO, USA Edited by: The medullary reticular formation contains large populations of inadequately described, Kathleen S. Rockland, MIT, USA excitatory interneurons that have been implicated in multiple homeostatic behaviors Reviewed by: including breathing, viserosensory processing, vascular tone, and pain. Many hindbrain Joan S. Baizer, University of Buffalo, nuclei show a highly stereotyped pattern of localization across vertebrates suggesting USA Ruth Stornetta, University of a strong underlying genetic organization. Whether this is true for neurons within Virginia, USA the reticular regions of hindbrain is unknown. Hindbrain neurons are derived from *Correspondence: distinct developmental progenitor domains each of which expresses distinct patterns of Paul A. Gray, Department of transcription factors (TFs). These neuronal populations have distinct characteristics such Anatomy and Neurobiology, as transmitter identity, migration, and connectivity suggesting developmentally expressed Washington University School of Medicine, Box 8108, 660 S. Euclid TFs might identify unique subpopulations of neurons within the reticular formation. A Ave., St. Louis, MO 63110, USA. fate-mapping strategy using perinatal expression of reporter genes within Atoh1, Dbx1, e-mail: [email protected] Lmx1b,andPtf1a transgenic mice coupled with immunohistochemistry (IHC) and in situ hybridization (ISH) were used to address the developmental organization of a large subset of reticular formation glutamatergic neurons. All hindbrain lineages have relatively large populations that extend the entire length of the hindbrain. Importantly, the location of neurons within each lineage was highly constrained. -
Molecular and Behavioral Profiling of Dbx1-Derived Neurons in The
Sokolowski et al. Neural Development (2016) 11:12 DOI 10.1186/s13064-016-0067-9 RESEARCH ARTICLE Open Access Molecular and behavioral profiling of Dbx1- derived neurons in the arcuate, lateral and ventromedial hypothalamic nuclei Katie Sokolowski1, Tuyen Tran1, Shigeyuki Esumi1,2, Yasmin Kamal1, Livio Oboti1, Julieta Lischinsky1,3, Meredith Goodrich1, Andrew Lam1, Margaret Carter1, Yasushi Nakagawa4 and Joshua G. Corbin1* Abstract Background: Neurons in the hypothalamus function to regulate the state of the animal during both learned and innate behaviors, and alterations in hypothalamic development may contribute to pathological conditions such as anxiety, depression or obesity. Despite many studies of hypothalamic development and function, the link between embryonic development and innate behaviors remains unexplored. Here, focusing on the embryonically expressed homeodomain-containing gene Developing Brain Homeobox 1 (Dbx1), we explored the relationship between embryonic lineage, post-natal neuronal identity and lineage-specific responses to innate cues. We found that Dbx1 is widely expressed across multiple developing hypothalamic subdomains. Using standard and inducible fate-mapping to trace the Dbx1-derived neurons, we identified their contributiontospecificneuronalsubtypesacross hypothalamic nuclei and further mapped their activation patterns in response to a series of well-defined innate behaviors. Results: Dbx1-derived neurons occupy multiple postnatal hypothalamic nuclei including the lateral hypothalamus (LH), arcuate nucleus -
Ventral Neural Patterning by Nkx Homeobox Genes: Nkx6.1 Controls Somatic Motor Neuron and Ventral Interneuron Fates
Downloaded from genesdev.cshlp.org on September 30, 2021 - Published by Cold Spring Harbor Laboratory Press RESEARCH COMMUNICATION vitro in response to two- to threefold changes in the Ventral neural patterning by concentration of Shh, and the position at which each Nkx homeobox genes: Nkx6.1 neuronal class is generated in vivo is predicted by the controls somatic motor neuron concentration required for their induction in vivo (Eric- son et al. 1997a,b; Briscoe et al. 2000). Thus, neurons and ventral interneuron fates generated in more ventral regions of the neural tube re- 1,2,6 3,6 quire progressively higher concentrations of Shh for their Maike Sander, Sussan Paydar, induction. 4,5 4 Johan Ericson, James Briscoe, The genetic programs activated in neural progenitor 3 1 Elizabeth Berber, Michael German, cells in response to Shh signaling, however, remain in- Thomas M. Jessell,4 and John L.R. Rubenstein3,7 completely defined. Emerging evidence suggests that homeobox genes function as critical intermediaries in 1Hormone Research Institute, Department of Medicine, the neural response to Shh signals (Lumsden and Krum- University of California–San Francisco, San Franscisco, California 94143 USA; 2Center for Molecular Neurobiology, lauf 1996; Tanabe and Jessell 1996; Ericson et al. 1997a,b; Hamburg, Germany; 3Nina Ireland Laboratory of Hammerschmidt et al. 1997; Rubenstein et al. 1998). Developmental Neurobiology, University of California–San Several homeobox genes are expressed by ventral pro- Francisco, San Francisco, California 94143 USA; -
Dbx1 Pre-Bötzinger Complex Interneurons Comprise the Core Inspiratory Oscillator for 2 Breathing in Adult Mice
bioRxiv preprint doi: https://doi.org/10.1101/271585; this version posted February 25, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Title: Dbx1 pre-Bötzinger complex interneurons comprise the core inspiratory oscillator for 2 breathing in adult mice 3 Authors: Nikolas C. Vann, Francis D. Pham, Kaitlyn E. Dorst, and Christopher A. Del Negro 4 Author affiliation: Department of Applied Science, The College of William and Mary, 5 Williamsburg, VA 23185 6 Nikolas C. Vann ORCID: 0000-0003-4139-0642 7 Francis D. Pham ORCID: 0000-0003-1082-8533 8 Kaitlyn Dorst ORCID: 0000-0002-5393-2608 9 Christopher A. Del Negro ORCID: 0000-0002-7848-8224 10 Corresponding author: Christopher A. Del Negro, Ph.D., Professor and Chair, Department of 11 Applied Science, Integrated Science Center, 540 Landrum Dr., The College of William and 12 Mary, Williamsburg, Virginia, 757-221-7808 (office), 757-221-2050 (fax), [email protected] 13 Conflict of interest: The authors declare no competing financial interests. 14 Acknowledgements: National Institutes of Health grant R01 HL104127 (PI: Del Negro) 15 supported this work. 16 bioRxiv preprint doi: https://doi.org/10.1101/271585; this version posted February 25, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. -
A Neuro-Specific Hedgehog-Responsive Enhancer from Intron 1 of the Murine Laminin Alpha 1 Gene
A neuro-specific hedgehog-responsive enhancer from intron 1 of the murine laminin alpha 1 gene Thesis presented for the degree of PhD by Kalin Dimitrov Narov Department of Biomedical Science University of Sheffield September 2013 i Acknowledgements I thank my supervisors Anne-Gaëlle Borycki and Philip Ingham for all expert guidance, patience, and for the opportunity to study vertebrate development in their laboratories. I also thank my advisors Pen Rashbass and Vincent Cunliffe for the helpful advices and their critical analyses on my work, and our collaborator Norris Ray Dunn for advising me on mouse transgenics and providing me with mouse embryos. Many thanks also to Shantisree Rayagiri, Joseph B. Pickering, Claire Anderson, Ashish Maurya, Weixin Niah, Harriet Jackson, Raymond Lee, Xingang Wang, Yogavali Pooblan for helping me with text formatting and embryo harvesting, and for providing me with reagents and advices. I am also grateful to the whole D-floor community, as well as to Martin Zeidler’s and Marcelo Rivolta’s labs for letting me use their equipment. Last but not least, I thank my family for the constant support and encouragement, and especially my parents for nurturing in me the love to nature and knowledge. Therefore, I dedicate this work to the memory of my father. ii Abstract Laminin alpha 1 (LAMA1) is a major component of the earliest basement membranes in the mammalian embryo. Disruption of the murine Lama1 gene result in lethal failure of germ layer differentiation and extraembryonic membrane formation at gastrulation stages, while conditional deletion of Lama1 leads to aberrant organization of retinal neurons and vasculature, and defects in cerebellar glia and granule cell precursors later in development. -
The Prop1-Like Homeobox Gene Unc-42 Specifies the Identity Of
RESEARCH ARTICLE The Prop1-like homeobox gene unc-42 specifies the identity of synaptically connected neurons Emily G Berghoff1, Lori Glenwinkel1, Abhishek Bhattacharya1, HaoSheng Sun1, Erdem Varol2, Nicki Mohammadi1, Amelia Antone1, Yi Feng1, Ken Nguyen3, Steven J Cook1, Jordan F Wood4, Neda Masoudi1, Cyril C Cros1, Yasmin H Ramadan1, Denise M Ferkey4, David H Hall3, Oliver Hobert1* 1Department of Biological Sciences, Columbia University, Howard Hughes Medical Institute, New York, United States; 2Department of Statistics, Zuckerman Institute, Columbia University, New York, United States; 3Dominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, United States; 4Department of Biological Sciences, University at Buffalo, The State University of New York, Buffalo, United States Abstract Many neuronal identity regulators are expressed in distinct populations of cells in the nervous system, but their function is often analyzed only in specific isolated cellular contexts, thereby potentially leaving overarching themes in gene function undiscovered. We show here that the Caenorhabditis elegans Prop1-like homeobox gene unc-42 is expressed in 15 distinct sensory, inter- and motor neuron classes throughout the entire C. elegans nervous system. Strikingly, all 15 neuron classes expressing unc-42 are synaptically interconnected, prompting us to investigate whether unc-42 controls the functional properties of this circuit and perhaps also the assembly of these neurons into functional circuitry. We found that unc-42 defines the routes of communication between these interconnected neurons by controlling the expression of neurotransmitter pathway genes, neurotransmitter receptors, neuropeptides, and neuropeptide receptors. Anatomical *For correspondence: analysis of unc-42 mutant animals reveals defects in axon pathfinding and synaptic connectivity, [email protected] paralleled by expression defects of molecules involved in axon pathfinding, cell-cell recognition, unc-42 Competing interest: See and synaptic connectivity.