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Supplementary Material for Nelson, P. R., B. Mccune & D. K. Swanson

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Supplementary material for Nelson, P. R., B. McCune & D. K. Swanson. 2015. Lichen traits and species as indicators of vegetation and environment. The Bryologist 118(3): XX–XX.

Supplementary Table S2. Trait matrix (alphabetical by species). “1” indicates a species possesses that trait.

  • Lichen Species
  • Subspecies

Alectoria ochroleuca

1111111111111011111111
0000000000000100000000
0000000000000000000000
0110011111000010000000
1001100000111101000000
0000000000000000111111
0000000000000000000000
0110111111000110000000
1001000000111001111111
0001000000111000000000
0000000000000000000000
0000000000000000000000
0110111110000000000000
1000000000000001111111
0000000001000110000000
0000001000000000000010
0000000000000100000000
0000000000000000000000

Allantoparmelia almquistii Allantoparmelia alpicola Allocetraria madreporiformis Anaptychia bryorum Arctoparmelia centrifuga Arctoparmelia incurva Arctoparmelia separata Arctoparmelia subcentrifuga Asahinea chrysantha Baeomyces carneus Baeomyces placophyllus Baeomyces rufus Blennothallia crispa Brodoa oroarctica Bryocaulon divergens Bryoria capillaris Bryoria chalybeiformis Bryoria fremontii Bryoria fuscescens Bryoria lanestris Bryoria nadvornikiana

  • Lichen Species
  • Subspecies

Bryoria nitidula

11101111111111111111111111111
00010000000000000000000000000
00000000000000000000000000000
00000000000000000000100000000
10011111001111111110010111111
01100000110000000001001000000
00000000000000000000000000000
00011111111111111111110000000
11100000000000000000001111111
00100000000000000000001101001
00000000000000000000000000000
00000000000000000000000010110
00010000000000000000100000000
11000000000000000000000000000
00000111111111111111010000000
01000000000000000000000000001
00000000000000000000000100000
00000000000000000000000000000

Bryoria simplicior Calicium viride Callome multipartita Candelariella terrigena Cetraria aculeata Cetraria cucullata Cetraria ericetorum Cetraria halei reticulata
Cetraria inermis Cetraria islandica Cetraria islandica Cetraria islandica Cetraria kamczatica Cetraria laevigata Cetraria muricata Cetraria nigricans Cetraria nivalis crispiformis islandica

Cetraria odontella Cetraria sepincola Cetrariella commixta Cetrariella delisei Chaenotheca furfuracea Cladonia acuminata Cladonia alaskana Cladonia albonigra Cladonia amaurocraea Cladonia arbuscula Cladonia bacillaris

  • Lichen Species
  • Subspecies

Cladonia bacilliformis

11111111111111111111111111111
00000000000000000000000000000
00000000000000000000000000000
00000000000000000000000000000
01101111111111111111111111111
00000000000000000000000000000
10010000000000000000000000000
00000000000000000000000000000
11111111111111111111111111111
11111111011111111111011111111
00000000000000000000000000000
00000000100000000000100000000
00000000000000000000000000000
00000000000000000000000000000
00000000000000000000000000000
10000111001101101101000000100
00000000000000010000000000010
00000000000000000000000000000

Cladonia bellidiflora Cladonia borealis Cladonia botrytes Cladonia cariosa Cladonia carneola Cladonia cenotea Cladonia chlorophaea Cladonia ciliata Cladonia coccifera Cladonia coniocraea Cladonia cornuta Cladonia crispata Cladonia cryptochlorophaea Cladonia cyanipes Cladonia decorticata Cladonia deformis Cladonia digitata Cladonia ecmocyna Cladonia fimbriata Cladonia furcata Cladonia gracilis

  • Cladonia gracilis
  • elongata

turbinata vulnerata
Cladonia gracilis Cladonia gracilis Cladonia grayi Cladonia kanewskii Cladonia macrophylla Cladonia merochlorophaea

  • Lichen Species
  • Subspecies

Cladonia metacorallifera Cladonia mitis

11111111111111111111111000011
00000000000000000000000111100
00000000000000000000000000000
00000000000000000000000000000
11111111111111111111111111111
00000000000000000000000000000
00000000000000000000000000000
00000000000000000000000111100
11111111111111111111111000011
10111010111100011001010000011
00000000000000000000000000000
01000101000011100110101000000
00000000000000000000000111100
00000000000000000000000000000
00000000000000000000000000000
00001000010000011001010000000
00000000001100000000000000000
00000000000000000000000000000

Cladonia ochrochlora Cladonia phyllophora Cladonia pleurota Cladonia portentosa Cladonia pyxidata Cladonia rangiferina Cladonia rei Cladonia scabriuscula Cladonia squamosa Cladonia squamosa Cladonia stellaris squamosa
Cladonia stygia Cladonia subfurcata Cladonia subulata Cladonia sulphurina Cladonia symphycarpia Cladonia trassii Cladonia umbricola Cladonia uncialis Cladonia verruculosa Cladonia verticillata Coccocarpia erythroxyli Collema flaccidum Collema tenax Collema undulatum

  • Dactylina arctica
  • arctica

  • Dactylina arctica
  • beringica

  • Lichen Species
  • Subspecies

Dactylina ramulosa

11110001000111111110000000001
00001110111000000001111111110
00000000000000000000000000000
01100110000000000010100000000
10011000111100010001011111111
00000001000011101100000000000
00000000000000000000000000000
01101001111011111111111111110
10010110000100000000000000000
10010000000000000000000000000
00000000111000000000000000000
00000000000000000000000000000
01101000000000000111110111110
00000110000100000000000000000
00000001000011111000001000000
00000001000011101000000000000
00000000000000000101100000000
00000000000000000000000000000

Dermatocarpon arnoldianum Dermatocarpon miniatum s.lat. Dibaeis baeomyces Enchylium polycarpon Ephebe hispidula Ephebe lanata Evernia mesomorpha Fuscopannaria abscondita Fuscopannaria praetermissa Fuscopannaria viridescens Gowardia nigricans Hypogymnia austerodes Hypogymnia bitteri Hypogymnia physodes Hypogymnia subobscura Hypogymnia vittata s.lat. Imshaugia aleurites Lasallia pennsylvanica Lathagrium cristatum Lathagrium fuscovirens Lathagrium undulatum Leciophysma finmarkicum Lempholemma cf. intricatum Lempholemma polyanthes Lempholemma radiatum Lempholemma sp. nov. Leptogium saturninum Lichenomphalia hudsoniana

  • Lichen Species
  • Subspecies

Lobaria linita

00010111111111111100000111111
01101000000000000000111000000
10000000000000000011000000000
00000111110000011000000101000
11011000000000000111000001010
00100000001111100000101010100
00000000000000000000010000000
11111111111111111011111111111
00000000000000000000000000000
00000000000000000000000000000
00000000000000000000000000000
00000000000000000000000000000
00100111111111111000111111111
00000000000000000000000000000
11011000000000000011000000000
00000000100010010000010000001
00000001001000100000000010100
00000000000000000000000000000

Lobaria pseudopulmonaria Lobaria scrobiculata Masonhalea richardsonii Massalongia carnosa Melanelia agnata Melanelia hepatizon Melanelia infumata Melanelia sorediata Melanelia stygia Melanohalea exasperatula Melanohalea multispora Melanohalea olivaceoides Melanohalea septentrionalis Melanohalea trabeculata Montanelia disjuncta Montanelia panniformis Multiclavula vernalis Nephroma arcticum Nephroma expallidum Nephroma helveticum Nephroma parile Nephroma resupinatum Parmelia fraudans Parmelia hygrophila Parmelia omphalodes Parmelia saxatilis Parmelia skultii Parmelia sulcata

  • Lichen Species
  • Subspecies

Parmeliella triptophylla Parmeliopsis ambigua Parmeliopsis hyperopta Peltigera aphthosa Peltigera canina

01100000000000000000000001111
10001111111101111111111100000
00010000000010000000000010000
00000000000000000000000000000
00011111111111111111111111110
11100000000000000000000000001
01100000000000000000000000000
11111111111111111111111111111
00000000000000000000000000000
00000000000000000000000000000
10000000000000000000000000000
00000000000000000000000000000
01111111111111111111111111111
00000000000000000000000000000
00000000000000000000000000000
01100011010000000000000000010
00000000000100000000000000000
00000000100000000001000000000

Peltigera chionophila Peltigera collina Peltigera didactyla Peltigera elisabethae Peltigera extenuata Peltigera kristinssonii Peltigera lepidophora Peltigera leucophlebia Peltigera lyngei Peltigera malacea Peltigera membranacea Peltigera neckeri Peltigera neopolydactyla Peltigera polydactylon Peltigera praetextata Peltigera retifoveata Peltigera rufescens Peltigera scabrosa Peltigera scabrosella Peltigera venosa Phaeophyscia constipata Phaeophyscia decolor Phaeophyscia sciastra Physcia aipolia

  • Lichen Species
  • Subspecies

Physcia caesia

11111100111110111111011000000
00000011000000000000100111000
00000000000001000000000000111
10001100110000000000011000000
01111011001111000011100111111
00000000000000111100000000000
00000000000000000000000000000
11110101001111010011111111111
00001010110000000000000000000
00001000000000000000000000000
00000000001111000000000000000
00000000010000101000000000000
11110101000000000011111101111
00000010100000000100000000000
00000000000000010000000010000
11100000000000011100001000000
00000000000000000000000000000
00000000000000000000000000000

Physcia dubia Physcia tenella s. lat. Physconia muscigena Pilophorus robustus Polycauliona candelaria Polychidium muscicola Protopannaria pezizoides Pseudephebe minuscula Pseudephebe pubescens Psora decipiens Psora himalayana Psora rubiformis Psoroma hypnorum Ramalina dilacerata Ramalina farinacea Ramalina roesleri Ramalina thrausta Rhizoplaca chrysoleuca Rhizoplaca melanophthalma Rostania ceranisca Rusavskia elegans Rusavskia sorediata Scytinium gelatinosum Scytinium lichenoides Scytinium tenuissimum Solorina bispora Solorina crocea Solorina saccata

  • Lichen Species
  • Subspecies

Solorina spongiosa

01100000000000001111111111111
00000000000000010000000000000
10011111111111100000000000000
00000000000000000011111111111
11111111111111111100000000000
00000000000000000000000000000
00000000000000000000000000000
10000000000000010111111111111
01111111111111101000000000000
00000010000001001000000000000
10000000000000000100000000000
01111101111110100000000000000
00000000000000000011111111111
00000000000000000000000000000
00000000000000010000000000000
00001000000101000000000000000
00000000000000000000000000000
00000000000000000000000000000

Sphaerophorus fragilis Sphaerophorus globosus Stereocaulon alpinum Stereocaulon apocalypticum Stereocaulon botryosum Stereocaulon glareosum Stereocaulon groenlandicum Stereocaulon paschale Stereocaulon saxatile Stereocaulon subcoralloides Stereocaulon symphycheilum Stereocaulon tomentosum Stereocaulon vesuvianum Stereocaulon wrightii Sticta arctica Thamnolia vermicularis Toninia candida Umbilicaria caroliniana Umbilicaria cinereorufescens Umbilicaria cylindrica Umbilicaria decussata s.lat Umbilicaria deusta Umbilicaria hyperborea Umbilicaria krascheninnikovii Umbilicaria phaea s.lat Umbilicaria proboscidea Umbilicaria scholanderi s.lat Umbilicaria torrefacta

  • Lichen Species
  • Subspecies

Umbilicaria vellea

111001110
000110001
000000000
100110001
000000110
011001000
000001000
100111110
011000001
000000000
000000000
000000000
100110010
011000001
000001100
000011000
000000000
000000000

Usnea lapponica Usnea scabrata Vestergrenopsis elaeina Vestergrenopsis isidiata Vulpicida pinastri Vulpicida tilesii Xanthoparmelia coloradoensis Zahlbrucknerella calcarea

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    Air Quality Monitoring Alaska Region

    United States Department of Agriculture Forest Service Air Quality Monitoring Alaska Region Ri O-TB-46 on theTongass National September, 1994 Forest Methods and Baselines Using Lichens September 1994 Linda H. Geiser, Chiska C. Derr, and Karen L. Diliman USDA-Forest Service Tongass National Forest/ Stikine Area P.O. Box 309 Petersburg, Alaska 99833 ,, ) / / 'C ,t- F C Air Quality Monitoringon the Tongass National Forest Methods and Baselines Using Lichens Linda H. Geiser, Chiska C. Derr and Karen L. Diliman USDA-Forest Service Tongass National Forest/ Stikine Area P.O. Box 309 Petersburg, Alaska 99833 September, 1994 1 AcknowJedgment Project development and funding: Max Copenhagen, Regional Hydrologist, Jim McKibben Stikine Area FWWSA Staff Officer and Everett Kissinger, Stikine Area Soil Scientist, and program staff officers from the other Areas recognized the need for baseline air quality information on the Tongass National Forest and made possible the initiation of this project in 1989. Their continued management level support has been essential to the development of this monitoring program. Lichen collections and field work: Field work was largely completed by the authors. Mary Muller contributed many lichens to the inventory collected in her capacity as Regional Botanist during the past 10 years. Field work was aided by Sarah Ryll of the Stikine Area, Elizabeth Wilder and Walt Tulecke of Antioch College, and Bill Pawuk, Stikine Area ecologist. Lichen identifications: Help with the lichen identifications was given by Irwin Brodo of the Canadian National Museum, John Thomson of the University of Wisconsin at Madison, Pak Yau Wong of the Canadian National Museum, and Bruce McCune at Oregon State University.
  • UC Riverside UC Riverside Previously Published Works

    UC Riverside UC Riverside Previously Published Works

    UC Riverside UC Riverside Previously Published Works Title Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota). Permalink https://escholarship.org/uc/item/3fm155t1 Authors U'Ren, Jana M Miadlikowska, Jolanta Zimmerman, Naupaka B et al. Publication Date 2016-05-01 DOI 10.1016/j.ympev.2016.02.010 License https://creativecommons.org/licenses/by-nc-nd/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California *Graphical Abstract (for review) ! *Highlights (for review) • Endophytes illuminate Xylariaceae circumscription and phylogenetic structure. • Endophytes occur in lineages previously not known for endophytism. • Boreal and temperate lichens and non-flowering plants commonly host Xylariaceae. • Many have endophytic and saprotrophic life stages and are widespread generalists. *Manuscript Click here to view linked References 1 Contributions of North American endophytes to the phylogeny, 2 ecology, and taxonomy of Xylariaceae (Sordariomycetes, 3 Ascomycota) 4 5 6 Jana M. U’Ren a,* Jolanta Miadlikowska b, Naupaka B. Zimmerman a, François Lutzoni b, Jason 7 E. Stajichc, and A. Elizabeth Arnold a,d 8 9 10 a University of Arizona, School of Plant Sciences, 1140 E. South Campus Dr., Forbes 303, 11 Tucson, AZ 85721, USA 12 b Duke University, Department of Biology, Durham, NC 27708-0338, USA 13 c University of California-Riverside, Department of Plant Pathology and Microbiology and Institute 14 for Integrated Genome Biology, 900 University Ave., Riverside, CA 92521, USA 15 d University of Arizona, Department of Ecology and Evolutionary Biology, 1041 E. Lowell St., 16 BioSciences West 310, Tucson, AZ 85721, USA 17 18 19 20 21 22 23 24 * Corresponding author: University of Arizona, School of Plant Sciences, 1140 E.
  • Lichens of Alaska

    Lichens of Alaska

    A Genus Key To The LICHENS OF ALASKA By Linda Hasselbach and Peter Neitlich January 1998 National Park Service Gates of the Arctic National Park and Presetve 201 First Avenue Fairbanks, AK 99701 ACKNOWLEDGMENTS We would like to aclmowledge the following individuals for their kind assistance: Jim Riley generously provided lichen photographs, with the exception of three copyrighted photos, Alectoria sannentosa, Peltigera neopolydactyla and P. membran.aceae, which are courtesy of Steve and Sylvia Sharnoff, and Neph­ roma arctica by Shelll Swanson. The line drawing on the cover, as well as those for Psoroma hypnorum and the 'lung-like' illustration, are the work of Alexander Mikulin as found in Uchens of Southeastern Alaska by Geiser, Dillman, Derr, and Stensvold. 'Cyphellae' and 'pseudocyphellae' are also by Alexander Mikulin as appear in MacroUchens of the Pac!ftc Northwest by McCune and Geiser. The Cladonia apothecia drawing is the work of Bruce McCune from Macrolichens of the Northern Rocky MoWltains by McCune and Goward. Drawings of Brodoa oroarctica, Physcia aipolia apothecia, and Peltigera veins are the work of Trevor Goward as found in 1he Uchens of Brittsh Columbia. Part I - FoUose and Squamulose Species by Goward, McCune and Meidinger. And the drawings of Masonhalea and Cetraria ericitorum are the work of Bethia Brehmer as found in Thomson's American Arctic MacroUchens. All photographs and line drawings were used by permission. Chiska Derr, Walter Neitlich, Roger Rosentreter, Thetus Smith, and Shelli Swanson provided valuable editing and draft comments. Thanks to Patty Rost and the staff of Gates of the Arctic National Park and Preserve for making this project possible.