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Supplementary Material for Nelson, P. R., B. Mccune & D. K. Swanson
Supplementary material for Nelson, P. R., B. McCune & D. K. Swanson. 2015. Lichen traits and species as indicators of vegetation and environment. The Bryologist 118(3): XX–XX. Supplementary Table S2. Trait matrix (alphabetical by species). “1” indicates a species possesses that trait. cladoniiform Filamentous Squamulose Cyano Erect Appressed 3D s branched Tripartite Fruticose Terricole Epiphyte Lignicole Saxicole p soredia lobules Foliose Simple foliose Green rawlin isida foliose Lichen Species Subspecies richly Only g Alectoria ochroleuca 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 Allantoparmelia almquistii 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Allantoparmelia alpicola 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Allocetraria madreporiformis 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 Anaptychia bryorum 1 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 Arctoparmelia centrifuga 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Arctoparmelia incurva 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 Arctoparmelia separata 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Arctoparmelia subcentrifuga 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 Asahinea chrysantha 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 Baeomyces carneus 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 Baeomyces placophyllus 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 Baeomyces rufus 1 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0 0 0 Blennothallia crispa 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 0 1 0 Brodoa oroarctica 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 Bryocaulon divergens 1 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 Bryoria capillaris 1 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 Bryoria chalybeiformis 1 0 0 0 0 1 0 0 1 0 0 0 0 -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
Diversification and Species Delimitation of Lichenized Fungi in Selected Groups of the Family Parmeliaceae (Ascomycota)
Diversification and species delimitation of lichenized fungi in selected groups of the family Parmeliaceae (Ascomycota) Kristiina Mark Tartu 7.10.2016 Publications I Mark, K., Saag, L., Saag, A., Thell, A., & Randlane, T. (2012) Testing morphology-based delimitation of Vulpicida juniperinus and V. tubulosus (Parmeliaceae) using three molecular markers. The Lichenologist 44 (6): 752−772. II Saag, L., Mark, K., Saag, A., & Randlane, T. (2014) Species delimitation in the lichenized fungal genus Vulpicida (Parmeliaceae, Ascomycota) using gene concatenation and coalescent-based species tree approaches. American Journal of Botany 101 (12): 2169−2182. III Mark, K., Saag, L., Leavitt, S. D., Will-Wolf, S., Nelsen, M. P., Tõrra, T., Saag, A., Randlane, T., & Lumbsch, H. T. (2016) Evaluation of traditionally circumscribed species in the lichen-forming genus Usnea (Parmeliaceae, Ascomycota) using six-locus dataset. Organisms Diversity & Evolution 16 (3): 497–524. IV Mark, K., Randlane, T., Hur, J.-S., Thor, G., Obermayer, W. & Saag, A. Lichen chemistry is concordant with multilocus gene genealogy and reflects the species diversification in the genus Cetrelia (Parmeliaceae, Ascomycota). Manuscript submitted to The Lichenologist. V Mark, K., Cornejo, C., Keller, C., Flück, D., & Scheidegger, C. (2016) Barcoding lichen- forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation. Genome 59 (9): 685–704. Systematics • Provides units for biodiversity measurements and investigates evolutionary relationships • -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al. -
Lichens of Alaska
A Genus Key To The LICHENS OF ALASKA By Linda Hasselbach and Peter Neitlich January 1998 National Park Service Gates of the Arctic National Park and Preserve 201 First Avenue Fairbanks, AK 99701 ACKNOWLEDGMENTS We would like to acknowledge the following Individuals for their kind assistance: Jim Riley generously provided lichen photographs, with the exception of three copyrighted photos, Alectoria sarmentosa, Peltigera neopolydactyla and P. membranaceae, which are courtesy of Steve and Sylvia Sharnoff, and Neph roma arctica by Shelli Swanson. The line drawing on the cover, as well as those for Psoroma hypnarum and the 'lung-like' illustration, are the work of Alexander Mikulin as found In Lichens of Southeastern Alaska by Gelser, Dillman, Derr, and Stensvold. 'Cyphellae' and 'pseudocyphellae' are also by Alexander Mikulin as appear In Macrolichens of the Pacific Northwest by McCune and Gelser. The Cladonia apothecia drawing is the work of Bruce McCune from Macrolichens of the Northern Rocky Mountains by McCune and Goward. Drawings of Brodoa oroarcttca, Physcia aipolia apothecia, and Peltigera veins are the work of Trevor Goward as found in The Lichens of British Columbia. Part I - Foliose and Squamulose Species by Goward, McCune and Meldlnger. And the drawings of Masonhalea and Cetraria ericitorum are the work of Bethia Brehmer as found In Thomson's American Arctic Macrolichens. All photographs and line drawings were used by permission. Chiska Derr, Walter Neitlich, Roger Rosentreter, Thetus Smith, and Shelli Swanson provided valuable editing and draft comments. Thanks to Patty Rost and the staff of Gates of the Arctic National Park and Preserve for making this project possible. -
Lichens of Alaska
A Genus Key To The LICHENS OF ALASKA By Linda Hasselbach and Peter Neitlich January 1998 National Park Service Gates of the Arctic National Park and Presetve 201 First Avenue Fairbanks, AK 99701 ACKNOWLEDGMENTS We would like to aclmowledge the following individuals for their kind assistance: Jim Riley generously provided lichen photographs, with the exception of three copyrighted photos, Alectoria sannentosa, Peltigera neopolydactyla and P. membran.aceae, which are courtesy of Steve and Sylvia Sharnoff, and Neph roma arctica by Shelll Swanson. The line drawing on the cover, as well as those for Psoroma hypnorum and the 'lung-like' illustration, are the work of Alexander Mikulin as found in Uchens of Southeastern Alaska by Geiser, Dillman, Derr, and Stensvold. 'Cyphellae' and 'pseudocyphellae' are also by Alexander Mikulin as appear in MacroUchens of the Pac!ftc Northwest by McCune and Geiser. The Cladonia apothecia drawing is the work of Bruce McCune from Macrolichens of the Northern Rocky MoWltains by McCune and Goward. Drawings of Brodoa oroarctica, Physcia aipolia apothecia, and Peltigera veins are the work of Trevor Goward as found in 1he Uchens of Brittsh Columbia. Part I - FoUose and Squamulose Species by Goward, McCune and Meidinger. And the drawings of Masonhalea and Cetraria ericitorum are the work of Bethia Brehmer as found in Thomson's American Arctic MacroUchens. All photographs and line drawings were used by permission. Chiska Derr, Walter Neitlich, Roger Rosentreter, Thetus Smith, and Shelli Swanson provided valuable editing and draft comments. Thanks to Patty Rost and the staff of Gates of the Arctic National Park and Preserve for making this project possible. -
BOOK NEWS Biodiversity and Ecology of Fungi
Biodiversity and Ecology of Fungi, Lichens, and Mosses: Kerner von Marilaun Workshop 2015 in memory of Josef Poelt. Edited by Paul Blanz. 2018. [Biosystematics and Ecology Series no. 34.] Vienna: Austria Academy of Sciences Press. Pp. vi + 715, illustr. (many colour). ISBN 978-3-7001-8219-1 (pbk). Price: 90 €. BOOK NEWS Munich and Berlin before moving to the contributions were all in English, Graz in 1971. It starts with a 100-page though this is something Poelt would have meticulously researched and well-illustrated absolutely hated! history of Poelt’s life and research by It would be too much to list all the Hannes Hertel. This is followed by 24 topics here, but ones that stood out for me contributions reflecting the range of his were those on bryophilous hypocrealean interests, and all concern fungi (including ascomycetes, lichenicolous fungi under the lichen-forming fungi) and are mainly one name:one fungus rule, species concepts from his former students, many of whom in rust fungi, host specificity in smut fungi, are now distinguished researchers in their lichens as a microbial habitat, fossil fungi, own right. The list (in alphabetical order) and the ultrastructure of basidiomycetes. includes most of the best known German- There is an enormous amount of speaking mycologists: †Robert Bauer, information here, and if you are interested Dominik Begerow, Reinhard Berndt, in these topics and others Poelt would Paul Blanz, Andreas Bresinsky, Peter have been interested do have a look at the Döbbeler, Martin Grube, Josef Hafellner, full contents (http://hw.oeaw.ac.at/8219- Rosemarie Honegger, Roland Kirschner, 1?frames=yes). -
CR 97-2 Pages
A Floristic Inventory and Spatial 97-23 Database for Fort Wainwright, Interior Alaska Charles Racine, Robert Lichvar, Barbara Murray, October 1997 Gerald Tande, Robert Lipkin, and Michael Duffy SPECIAL REPORT Abstract: An inventory of the vascular and ground-in- Flats and associated wetlands, 4) the upland buttes and habiting cryptogam flora of Fort Wainwright, in interior Blair Lakes area in Tanana Flats, and 5) the floodplains Alaska, was conducted during the summer of 1995 to of the Tanana and Chena Rivers. Over 100 sites were support land management needs related to the impact visited, with habitats ranging from very dry south-facing of training. Primary plant collecting, identification and slopes to forest, floodplains, wetlands, and alpine tun- verification were conducted by the Alaska Natural Heri- dra. tage Program and the University of Alaska Museum. Vascular collections represented 491 species (includ- The work was supervised and the data compiled into a ing subspecies and varieties), included about 26% of geographic information system by the USA Cold Re- Alaska’s vascular flora, and are considered to be rela- gions Research and Engineering Laboratory and the tively complete. The cryptogam collections included 219 USA Waterways Experiment Station. species, representing 92 mosses, 117 lichens, and 10 Fort Wainwright covers 370,450 hectares (915,000 liverworts. The flora is characteristic of the circumpolar acres); it was divided into five areas: 1) the valleys of boreal forest and wetlands of both North America and a cantonment area of base facilities, 2) the slopes and Eurasia, but it also contains alpine and dry-grassland alpine areas of the Yukon–Tanana Uplands, 3) Tanana and steppe species. -
Biota and Ecological Communities
Biota and Ecological Communities Chapter 3 Prepared by Brad Stelfox and Bob Wynes Contributors: Chris Buddle Doug Collister Bert Finnamore Greg Greidanus Linda Halsey James Hammond Archie Landals Dave Moyles Mike Michaelian Rick Schneider Bob Shelast Dale Vitt Cliff Wallis Dave Walty Summary Points • Northwest Alberta possesses a diverse biota, including both flora and fauna. • Although our knowledge of the diversity of more primitive simple organisms is grossly incomplete, we do know that they contain remarkable species richness, and play a critical role within ecological communities. • Systematic and comprehensive inventories exist for but a few species in northwest Alberta, and these are confined to those profile species viewed critical in terms of consumptive use or endangered status. • The biotic communities of northwest Alberta are exceptionally young from a geologic perspective, reflecting the recent retreat of regional glacial ice sheets ~10,000 years ago. • Currently, plant communities are diverse and reflect physiographic differences in elevation, slope, aspect and relief, and to a significant extent, disturbance regimes. This gradient in plant community structure has been stratified into assemblages defined as “natural subregions”. • A considerable portion of northwest Alberta is low in elevation with impaired or minimal drainage. These areas are characterized by fen and bog complexes. Although poorly understood in terms of their ecological role, these organic comlexes contain vast amounts of organic carbon and are pivotal to the hydrological cycle of the region. • In comparison to more southerly or more coastal regions of similar size in North America, northwest Alberta has a relatively depauperate fish, reptile, amphibian and mammalian fauna. It does, however, support a remarkably high species richness for birds, largely owing to the great number of neotropical bird species that migrate to northwest Alberta to breed and nest during the summer season. -
High-Mountain Lichen Elements of the Khangai Range of Mountain (Mongolia)
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Sauteria-Schriftenreihe f. systematische Botanik, Floristik u. Geobotanik Jahr/Year: 1998 Band/Volume: 9 Autor(en)/Author(s): Biazrov Lev G. Artikel/Article: Hochmontane Flechtenelemente des Chagajgebirges (Mongolai) 387- 395 © Verlag Alexander Just: Dorfbeuern - Salzburg - Brüssel; download unter www.biologiezentrum.at Sauteria 9,1998 IAL 3 - Proceedings 387-396 HIGH-MOUNTAIN LICHEN ELEMENTS OF THE KHANGAI RANGE OF MOUNTAIN (MONGOLIA) i lochmontane Flechtenelemente des Changajgebirges (Mongolei) by Lev G.B iazrov K e y w o rd s: Biogeography, Khangai, lichens, Mongolia, mountains. S ch lagw örter: Biogeographie, Changaj, Flechten, Mongolei, Gebirge. S u m m a ry : The liehen flora of the Khangai ränge of mountains (Mon golia) includes 750 species of different zonal geographical elements with predominance of boreal, arid and arcto-highmountain lichens. In high-mountain beit of the Khangai in altitude more than 2200 - 2450 m above sea level or above the timber-line 320 liehen species were recor ded. The main quota fall to arcto-highmountain lichens (31% of total number in beit). Lichen list of high-mountain element flora, i.e. species that mainly grow in mountains of the world above timber-line someti- mes also in other belts, contain 18 species with different areal types. They consider particular the areals ofPertusaria saximontana, Umbilica ria angulata, U. caroliniana, U. phaea with Asian - American disjunctions. The origin of disjunctions between Mongolia and North America can be explained by the hypothesis of ocean floor spreading - plate tecto- nics. Z usam m enfassung: Die Flechtenflora des Changajgebirges schließt 750 Arten verschiedener zonaler geographischer Elemente ein, wobei die borealen, ariden und arktisch-hochmontanen Flechten dominieren. -
A Preliminary List of the Lichens of New York
Opuscula Philolichenum, 1: 55-74. 2004. A Preliminary List of the Lichens of New York RICHARD C. HARRIS1 ABSTRACT. – A list of 808 species and 7 subspecific taxa of lichens known to the author to occur in New York state is presented. The new combination Myriospora immersa (Fink ex J. Hedrick) R. C. Harris is made. The rationale for publishing this admittedly incomplete list of New York's lichens is that I am unlikely to ever have time to improve it significantly. The list has been accumulated more or less haphazardly over a period of twenty plus years. Many problems have been left unresolved. It is largely based on specimens held by The New York Botanical Garden (NY), Brooklyn Botanic Garden (BKL) and Buffalo Museum of Science (BUF), to a lesser extent Cornell University (CUP) and Farlow Herbarium, Harvard University (FH) and a few from New York State Museum (NYS) . The holdings of the New York State Museum represent a large collection not yet fully studied and will surely add significantly to knowledge of the state's lichen diversity. Surviving specimens for the earliest publication on New York lichens by Halsey (1824) are yet to be studied. Voucher information is available from the author upon request. The collections in BKL and BUF have been databased and copies can also be made available. For those interested, the history of lichenology in New York has been summarized by LaGreca (2001). Some literature records have been included if I consider them reliable, i.e., Brodo (1968) or significant, i.e., Lowe (1939). No doubt I have missed some worthy literature records in recent revisions.