Introduction to Study Design by Jeremy Howick
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Levels of Evidence Table
Levels of Evidence All clinically related articles will require a Level-of-Evidence rating for classifying study quality. The Journal has five levels of evidence for each of four different study types; therapeutic, prognostic, diagnostic and cost effectiveness studies. Authors must classify the type of study and provide a level - of- evidence rating for all clinically oriented manuscripts. The level-of evidence rating will be reviewed by our editorial staff and their decision will be final. The following tables and types of studies will assist the author in providing the appropriate level-of- evidence. Type Treatment Study Prognosis Study Study of Diagnostic Test Cost Effectiveness of Study Study LEVEL Randomized High-quality Testing previously Reasonable I controlled trials prospective developed costs and with adequate cohort study diagnostic criteria alternatives used statistical power with > 80% in a consecutive in study with to detect follow-up, and series of patients values obtained differences all patients and a universally from many (narrow enrolled at same applied “gold” standard studies, study confidence time point in used multi-way intervals) and disease sensitivity follow up >80% analysis LEVEL Randomized trials Prospective cohort Development of Reasonable costs and II (follow up <80%, study (<80% follow- diagnostic criteria in a alternatives used in Improper up, patients enrolled consecutive series of study with values Randomization at different time patients and a obtained from limited Techniques) points in disease) universally -
TUTORIAL in BIOSTATISTICS: the Self-Controlled Case Series Method
STATISTICS IN MEDICINE Statist. Med. 2005; 0:1–31 Prepared using simauth.cls [Version: 2002/09/18 v1.11] TUTORIAL IN BIOSTATISTICS: The self-controlled case series method Heather J. Whitaker1, C. Paddy Farrington1, Bart Spiessens2 and Patrick Musonda1 1 Department of Statistics, The Open University, Milton Keynes, MK7 6AA, UK. 2 GlaxoSmithKline Biologicals, Rue de l’Institut 89, B-1330 Rixensart, Belgium. SUMMARY The self-controlled case series method was developed to investigate associations between acute outcomes and transient exposures, using only data on cases, that is, on individuals who have experienced the outcome of interest. Inference is within individuals, and hence fixed covariates effects are implicitly controlled for within a proportional incidence framework. We describe the origins, assumptions, limitations, and uses of the method. The rationale for the model and the derivation of the likelihood are explained in detail using a worked example on vaccine safety. Code for fitting the model in the statistical package STATA is described. Two further vaccine safety data sets are used to illustrate a range of modelling issues and extensions of the basic model. Some brief pointers on the design of case series studies are provided. The data sets, STATA code, and further implementation details in SAS, GENSTAT and GLIM are available from an associated website. key words: case series; conditional likelihood; control; epidemiology; modelling; proportional incidence Copyright c 2005 John Wiley & Sons, Ltd. 1. Introduction The self-controlled case series method, or case series method for short, provides an alternative to more established cohort or case-control methods for investigating the association between a time-varying exposure and an outcome event. -
Supplementary File
Supplementary file Table S1. Characteristics of studies included in the systematic review. Authors, reference Type of article Number of patients Type of stroke Valderrama [1] case report 1 AIS Oxley [2] case series 5 AIS Morassi [3] case series 6 AIS (n = 4), HS (n = 2) Tunc [4] case series 4 AIS Avula [5] case series 4 AIS (n = 3), TIA (n = 1) Oliver [6] case report 1 AIS Beyrouti [7] case series 6 AIS Al Saiegh [8] case series 2 AIS (n = 1), SAH (n = 1) Gunasekaran [9] case report 1 AIS Goldberg [10] case report 1 AIS Viguier [11] case report 1 AIS Escalard [12] case series/ case control 10 AIS Wang [13] case series 5 AIS Fara [14] case series 3 AIS Moshayedi [15] case report 1 AIS Deliwala [16] case report 1 AIS Sharafi-Razavi [17] case report 1 HS retrospective cohort study (case Jain [18] 35 AIS (n = 26) HS (n = 9) control) retrospective cohort study (case Yaghi [19] 32 AIS control) AIS (n = 35), TIA (n = 5), HS Benussi [20] retrospective cohort study 43 (n = 3) Rudilosso [21] case report 1 AIS Lodigiani [22] retrospective cohort study 9 AIS Malentacchi [23] case report 1 AIS J. Clin. Med. 2020, 9, x; doi: FOR PEER REVIEW www.mdpi.com/journal/jcm J. Clin. Med. 2020, 9, x FOR PEER REVIEW 2 of 8 retrospective cohort study/case Scullen [24] 2 HS + AIS (n = 1), AIS (n = 1) series retrospective cohort study/ case AIS (n = 17), ST (n = 2), HS Sweid [25] 22 series (n = 3) AIS – acute ischemic stroke; HS – haemorrhagic stroke; SAH – subarachnoid haemorrhage; ST – sinus thrombosis; TIA-transient ischemic attack. -
Quasi-Experimental Studies in the Fields of Infection Control and Antibiotic Resistance, Ten Years Later: a Systematic Review
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Infect Control Manuscript Author Hosp Epidemiol Manuscript Author . Author manuscript; available in PMC 2019 November 12. Published in final edited form as: Infect Control Hosp Epidemiol. 2018 February ; 39(2): 170–176. doi:10.1017/ice.2017.296. Quasi-experimental Studies in the Fields of Infection Control and Antibiotic Resistance, Ten Years Later: A Systematic Review Rotana Alsaggaf, MS, Lyndsay M. O’Hara, PhD, MPH, Kristen A. Stafford, PhD, MPH, Surbhi Leekha, MBBS, MPH, Anthony D. Harris, MD, MPH, CDC Prevention Epicenters Program Department of Epidemiology and Public Health, University of Maryland School of Medicine, Baltimore, Maryland. Abstract OBJECTIVE.—A systematic review of quasi-experimental studies in the field of infectious diseases was published in 2005. The aim of this study was to assess improvements in the design and reporting of quasi-experiments 10 years after the initial review. We also aimed to report the statistical methods used to analyze quasi-experimental data. DESIGN.—Systematic review of articles published from January 1, 2013, to December 31, 2014, in 4 major infectious disease journals. METHODS.—Quasi-experimental studies focused on infection control and antibiotic resistance were identified and classified based on 4 criteria: (1) type of quasi-experimental design used, (2) justification of the use of the design, (3) use of correct nomenclature to describe the design, and (4) statistical methods used. RESULTS.—Of 2,600 articles, 173 (7%) featured a quasi-experimental design, compared to 73 of 2,320 articles (3%) in the previous review (P<.01). Moreover, 21 articles (12%) utilized a study design with a control group; 6 (3.5%) justified the use of a quasi-experimental design; and 68 (39%) identified their design using the correct nomenclature. -
Case Series: COVID-19 Infection Causing New-Onset Diabetes Mellitus?
Endocrinology & Metabolism International Journal Case Series Open Access Case series: COVID-19 infection causing new-onset diabetes mellitus? Abstract Volume 9 Issue 1 - 2021 Objectives: This paper seeks to explore the hypothesis of the potential diabetogenic effect 1 2 of SARS-COV-2 (Severe Acute respiratory syndrome coronavirus). Rujuta Katkar, Narasa Raju Madam 1Consultant Endocrinologist at Yuma Regional Medical Center, Case series presentation: We present a case series of observation among 8 patients of age USA 2 group ranging from 34 to 74 years with a BMI range of 26.61 to 53.21 Kilogram/square Hospitalist at Yuma Regional Medical Center, USA meters that developed new-onset diabetes after COVID-19 infection. Correspondence: Rujuta Katkar, MD, Consultant Severe Acute Respiratory Syndrome Coronavirus (SARS-COV-2), commonly known as Endocrinologist at Yuma Regional Medical Center, 2851 S Coronavirus or COVID-19(Coronavirus infectious disease), gains entry into the cells by Avenue B, Bldg.20, Yuma, AZ-85364, USA, Tel 2034359976, binding to the Angiotensin-converting enzyme-2(ACE-2) receptors located in essential Email metabolic tissues including the pancreas, adipose tissue, small intestine, and kidneys. Received: March 25, 2021 | Published: April 02, 2021 The evidence reviewed from the scientific literature describes how ACE 2 receptors play a role in the pathogenesis of diabetes and the plausible interaction of SARS-COV-2 with ACE 2 receptors in metabolic organs and tissues. Conclusion: The 8 patients without a past medical history of diabetes admitted with COVID-19 infection developed new-onset diabetes mellitus due to plausible interaction of SARS-COV-2 with ACE 2 receptors. -
Observational Clinical Research
E REVIEW ARTICLE Clinical Research Methodology 2: Observational Clinical Research Daniel I. Sessler, MD, and Peter B. Imrey, PhD * † Case-control and cohort studies are invaluable research tools and provide the strongest fea- sible research designs for addressing some questions. Case-control studies usually involve retrospective data collection. Cohort studies can involve retrospective, ambidirectional, or prospective data collection. Observational studies are subject to errors attributable to selec- tion bias, confounding, measurement bias, and reverse causation—in addition to errors of chance. Confounding can be statistically controlled to the extent that potential factors are known and accurately measured, but, in practice, bias and unknown confounders usually remain additional potential sources of error, often of unknown magnitude and clinical impact. Causality—the most clinically useful relation between exposure and outcome—can rarely be defnitively determined from observational studies because intentional, controlled manipu- lations of exposures are not involved. In this article, we review several types of observa- tional clinical research: case series, comparative case-control and cohort studies, and hybrid designs in which case-control analyses are performed on selected members of cohorts. We also discuss the analytic issues that arise when groups to be compared in an observational study, such as patients receiving different therapies, are not comparable in other respects. (Anesth Analg 2015;121:1043–51) bservational clinical studies are attractive because Group, and the American Society of Anesthesiologists they are relatively inexpensive and, perhaps more Anesthesia Quality Institute. importantly, can be performed quickly if the required Recent retrospective perioperative studies include data O 1,2 data are already available. -
The Value of Case Reports in Systematic Reviews from Rare Diseases
International Journal of Environmental Research and Public Health Article The Value of Case Reports in Systematic Reviews from Rare Diseases. The Example of Enzyme Replacement Therapy (ERT) in Patients with Mucopolysaccharidosis Type II (MPS-II) Miguel Sampayo-Cordero 1,2,*, Bernat Miguel-Huguet 3, Andrea Malfettone 1,2, José Manuel Pérez-García 1,2,4, Antonio Llombart-Cussac 1,2,5, Javier Cortés 1,2,4,6, Almudena Pardo 7 and Jordi Pérez-López 8 1 Medica Scientia Innovation Research (MedSIR), Ridgewood, NJ 07450, USA; [email protected] (A.M.); [email protected] (J.M.P.-G.); [email protected] (A.L.-C.); [email protected] (J.C.) 2 Medica Scientia Innovation Research (MedSIR), 08018 Barcelona, Spain 3 Department of Surgery, Hospital de Bellvitge, L’Hospitalet de Llobregat, 08907 Barcelona, Spain; [email protected] 4 Institute of Breast Cancer, Quiron Group, 08023 Barcelona, Spain 5 Hospital Arnau de Vilanova, Universidad Católica de Valencia “San Vicente Mártir”, 46015 Valencia, Spain 6 Vall d’Hebron Institute of Oncology (VHIO), 08035 Barcelona, Spain 7 Albiotech Consultores y Redacción Científica S.L., 28035 Madrid, Spain; [email protected] 8 Department of Internal Medicine, Hospital Vall d’Hebron, 08035 Barcelona, Spain; [email protected] * Correspondence: [email protected] Received: 3 August 2020; Accepted: 7 September 2020; Published: 10 September 2020 Abstract: Background: Case reports are usually excluded from systematic reviews. Patients with rare diseases are more dependent on novel individualized strategies than patients with common diseases. We reviewed and summarized the novelties reported by case reports in mucopolysaccharidosis type II (MPS-II) patients treated with enzyme replacement therapy (ERT). -
Download, And
medRxiv preprint doi: https://doi.org/10.1101/19002121; this version posted July 15, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. Evaluation of Indicators of Reproducibility and Transparency in Published Cardiology Literature Short Title: Anderson et al.; Indicators of Reproducibility in Cardiology J. Michael Anderson, B.S.1, Bryan Wright, B.G.S.1, Daniel Tritz, B.S.1, Jarryd Horn, B.S.1, Ian Parker, D.O.2, Daniel Bergeron, D.O.2, Sharolyn Cook, D.O.2, Matt Vassar, PhD1 1. Oklahoma State University Center for Health Sciences, Tulsa, Oklahoma, USA 2. Oklahoma State University Medical Center - Department of Cardiology, Tulsa, Oklahoma, USA Corresponding Author: Mr. J. Michael Anderson, Oklahoma State University Center for Health Sciences, 1111 W 17th St Tulsa, OK 74107, United States; Fax: 918-561-8428; Telephone: 918-521-8774; Email: [email protected] Word Count: 7041 NOTE: This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice. medRxiv preprint doi: https://doi.org/10.1101/19002121; this version posted July 15, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission. Abstract: Background The extent of reproducibility in cardiology research remains unclear. Therefore, our main objective was to determine the quality of research published in cardiology journals using eight indicators of reproducibility. -
Top Ten Cool Things About 250B Exam 1
Cohort Studies Madhukar Pai, MD, PhD McGill University Montreal 1 Cohort: origins of the word http://www.caerleon.net/ 2 Introduction • Measurement of the occurrence of events over time is a central goal of epidemiologic research • Regardless of any particular study design or hypothesis, interest is ultimately in the disease or outcome-causing properties of factors that are antecedent to the disease or outcome. • All study designs (including case control and cross- sectional studies) are played out in some populations over time (either well defined cohorts or not) – They differ in how they acknowledge time and how they sample exposed and non-exposed as these groups develop disease over time 3 All the action happens within a “sea of person-time” in which events occur 4 Morgenstern IJE 1980 Cohort studies Intuitive approach to studying disease incidence and risk factors: 1. Start with a population at risk 2. Measure exposures and covariates at baseline 3. Follow-up the cohort over time with a) Surveillance for events or b) re-examination 4. Keep track of attrition, withdrawals, drop-outs and competing risks 5. For covariates that change over time, measure them again during follow up 6. Compare event rates in people with and without exposures of interest - Incidence Density Ratio (IDR) is the most natural and appropriate measure of effect - Adjust for confounders and compute adjusted IDR - Look for effect measure modification, if appropriate 5 Cohort studies • Can be large or small • Can be long or short duration • Can be simple or elaborate • Can look at multiple exposures and multiple outcomes • Can look at changes in exposures over time • For rare outcomes need many people and/or lengthy follow- up • Are usually very expensive because of the numbers and follow-up requirements • But once a cohort is established, can sustain research productivity for a long, long time! 6 Cohort: keeping track of people 7 Szklo & Nieto. -
Study Types Transcript
Study Types in Epidemiology Transcript Study Types in Epidemiology Welcome to “Study Types in Epidemiology.” My name is John Kobayashi. I’m on the Clinical Faculty at the Northwest Center for Public Health Practice, at the School of Public Health and Community Medicine, University of Washington in Seattle. From 1982 to 2001, I was the state epidemiologist for Communicable Diseases at the Washington State Department of Health. Since 2001, I’ve also been the foreign adviser for the Field Epidemiology Training Program of Japan. About this Module The modules in the epidemiology series from the Northwest Center for Public Health Practice are intended for people working in the field of public health who are not epidemiologists, but who would like to increase their understanding of the epidemiologic approach to health and disease. This module focuses on descriptive and analytic epide- miology and their respective study designs. Before you go on with this module, we recommend that you become familiar with the following modules, which you can find on the Center’s Web site: What is Epidemiology in Public Health? and Data Interpretation for Public Health Professionals. We introduce a number of new terms in this module. If you want to review their definitions, the glossary in the attachments link at the top of the screen may be useful. Objectives By now, you should be familiar with the overall approach of epidemiology, the use of various kinds of rates to measure disease frequency, and the various ways in which epidemiologic data can be presented. This module offers an overview of descriptive and analytic epidemiology and the types of studies used to review and investigate disease occurrence and causes. -
Epidemiologic Study Designs
Epidemiologic Study Designs Jacky M Jennings, PhD, MPH Associate Professor Associate Director, General Pediatrics and Adolescent Medicine Director, Center for Child & Community Health Research (CCHR) Departments of Pediatrics & Epidemiology Johns Hopkins University Learning Objectives • Identify basic epidemiologic study designs and their frequent sequence of study • Recognize the basic components • Understand the advantages and disadvantages • Appropriately select a study design Research Question & Hypotheses Analytic Study Plan Design Basic Study Designs and their Hierarchy Clinical Observation Hypothesis Descriptive Study Case-Control Study Cohort Study Randomized Controlled Trial Systematic Review Causality Adapted from Gordis, 1996 MMWR Study Design in Epidemiology • Depends on: – The research question and hypotheses – Resources and time available for the study – Type of outcome of interest – Type of exposure of interest – Ethics Study Design in Epidemiology • Includes: – The research question and hypotheses – Measures and data quality – Time – Study population • Inclusion/exclusion criteria • Internal/external validity Epidemiologic Study Designs • Descriptive studies – Seeks to measure the frequency of disease and/or collect descriptive data on risk factors • Analytic studies – Tests a causal hypothesis about the etiology of disease • Experimental studies – Compares, for example, treatments EXPOSURE Cross-sectional OUTCOME EXPOSURE OUTCOME Case-Control EXPOSURE OUTCOME Cohort TIME Cross-sectional studies • Measure existing disease and current exposure levels at one point in time • Sample without knowledge of exposure or disease • Ex. Prevalence studies Cross-sectional studies • Advantages – Often early study design in a line of investigation – Good for hypothesis generation – Relatively easy, quick and inexpensive…depends on question – Examine multiple exposures or outcomes – Estimate prevalence of disease and exposures Cross-sectional studies • Disadvantages – Cannot infer causality – Prevalent vs. -
Overview of Epidemiological Study Designs
University of Massachusetts Medical School eScholarship@UMMS PEER Liberia Project UMass Medical School Collaborations in Liberia 2018-11 Overview of Epidemiological Study Designs Richard Ssekitoleko Yale University Let us know how access to this document benefits ou.y Follow this and additional works at: https://escholarship.umassmed.edu/liberia_peer Part of the Clinical Epidemiology Commons, Epidemiology Commons, Family Medicine Commons, Infectious Disease Commons, Medical Education Commons, and the Quantitative, Qualitative, Comparative, and Historical Methodologies Commons Repository Citation Ssekitoleko R. (2018). Overview of Epidemiological Study Designs. PEER Liberia Project. https://doi.org/ 10.13028/fp3z-mv12. Retrieved from https://escholarship.umassmed.edu/liberia_peer/5 This material is brought to you by eScholarship@UMMS. It has been accepted for inclusion in PEER Liberia Project by an authorized administrator of eScholarship@UMMS. For more information, please contact [email protected]. Overview of Epidemiological study Designs Richard Ssekitoleko Department of Global Health Yale University 1.1 Objectives • Understand the different epidemiological study types • Get to know what is involved in each type of study • Understand the strengths and Limitations of each study type Key terms • Population • Consists of all elements and is the group from which a sample is drawn • A sample is a subset of a population • Parameters • Summary data from a population • Statistics • Summary data from a sample • Validity • Extent to which a conclusion or statistic is well-founded and likely corresponds accurately to the parameter. Hierarchy of Evidence Study type Observational Interventional Descriptive Experiment Ecological Randomized Controlled Trial Cross-sectional Case-control Cohort Overview of Epidemiologic Study Designs Validity *anecdotes Cost Understanding What Physicians Mean: In my experience … once.