Cellular Localization of Clathridimine, an Antimicrobial 2-Aminoimidazole Alkaloid Produced by the Mediterranean Calcareous Sponge Clathrina Clathrus

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Cellular Localization of Clathridimine, an Antimicrobial 2-Aminoimidazole Alkaloid Produced by the Mediterranean Calcareous Sponge Clathrina Clathrus J. Nat. Prod. XXXX, xxx, 000 A Cellular Localization of Clathridimine, an Antimicrobial 2-Aminoimidazole Alkaloid Produced by the Mediterranean Calcareous Sponge Clathrina clathrus Me´lanie Roue´,† Isabelle Domart-Coulon,‡ Alexander Ereskovsky,§,⊥ Chakib Djediat,| Thierry Perez,⊥ and Marie-Lise Bourguet-Kondracki*,† Laboratoire Mole´cules de Communication et Adaptation des Micro-organismes, FRE 3206 CNRS, Muse´um National d’Histoire Naturelle, 57 Rue CuVier (C.P. 54), 75005 Paris, France, Laboratoire de Biologie des Organismes et des Ecosyste`mes Aquatiques, UMR 7208 MNHN-CNRS-IRD-UPMC, Muse´um National d’Histoire Naturelle, 57 Rue CuVier (C.P. 26), 75005 Paris, France, Biological Faculty, Saint-Petersburg State UniVersity, UniVersitetskaya nab. 7/9, 199034 Saint-Petersburg, Russian Federation, Centre d’Oce´anologie de Marseille, UMR 6540 DIMAR CNRS-UniVersite´delaMe´diterrane´e, Station Marine d’Endoume, Rue de la Batterie des Lions, 13007 Marseille, France, and SerVice de Microscopie Electronique, Muse´um National d’Histoire Naturelle, 57 Rue CuVier (C.P.39), 75005 Paris, France ReceiVed March 12, 2010 Chemical investigation of the Mediterranean calcareous sponge Clathrina clathrus led to the isolation of large amounts of a new 2-aminoimidazole alkaloid, named clathridimine (1), along with the known clathridine (2) and its zinc complex (3). The structure of the new metabolite was assigned by detailed spectroscopic analysis. Clathridimine (1) displayed selective anti-Escherichia coli and anti-Candida albicans activities. Clathridine (2) showed only anti-Candida albicans activity, and its zinc complex (3) exhibited selective anti-Staphylococcus aureus activity. The isolation of analogues of 2-amino-imidazole derivatives from several Leucetta species from various sites in the Pacific Ocean and the Red Sea raises the question of their biosynthetic origin. Microscopic studies revealed abundant extracellular bacteria located in the mesohyl of the sponge, with two predominant morphotypes including spiral bacteria and long, narrow bacilli. Chemical analysis with HPLC/UV/ELSD profiles of sponge cells separated from bacteria by differential centrifugation and trypsinization of the sponge cell surface revealed that clathridine (2) was localized in the sponge cells. Marine sponges are a rich source of structurally unique natural cytotoxic,23-25 anti-inflammatory,30 and antitumor activities.31 Most compounds, with many of them displaying a wide variety of biological of them have been isolated from species belonging to the genus activities.1 They are also known to host a wide diversity of microor- Leucetta (Haeckel 1872), in the subclass Calcinea, order Clathrinida, ganisms that can amount up to 40-60% of the biomass of the sponge and family Leucettidae in specimens collected from various 2-4 and exceed seawater concentrations by 2-4 orders of magnitude. geographical sites (Pacific Ocean and Red Sea). These compounds Recently, these associations have raised questions about the origins have also been isolated from nudibranchs of the genus Notodoris, 5,6 of the metabolites isolated from sponges. However, despite this which feed on these sponges and sequester the alkaloid pigments growing interest in marine symbiotic association research, the complex in their dorsal mantle.16-18,31 To date there is no hypothesis interactions between sponges and associated microsymbionts remain regarding their biosynthesis, but their isolation from several Leucetta difficult to investigate. Thus the putative origin of natural compounds species from various sites raises the question of their biosynthetic isolated from sponges is often inferred from cellular localization - origin. Currently, there is little microbiological information available data.7 12 on sponges belonging to the Clathrinidae family. There is only one As part of our ongoing investigations on sponges within the ultrastructural report of a homogeneous population of one mor- framework of the French program ECIMAR (Ecologie Chimique: phological type of Gram-negative elongated bacterium inhabiting Indicateurs de Biodiversite´ et Valorisation), we studied the chem- the aquiferous canal system of Clathrina cerebrum (Haeckel, 1872) istry and microbiology of the Mediterranean calcareous sponge and of rare coiled bacteria associated with choanocytes of Clathrina Clathrina clathrus (Schmidt, 1864) (Calcispongia, Calcinea, Clath- 33 rinida, Clathrinidae). Unlike Demospongiae, Calcispongia have been clathrus. minimally studied in terms of both chemistry and microbiology. The 1:1 CH2Cl2/MeOH extract of C. clathrus revealed interesting Furthermore, their relatively low microbial density and diversity, broad-spectrum antimicrobial activities against both Gram-positive as reported for example for the Calcinea species Pericharax (Staphylococcus aureus) and Gram-negative (Escherichia coli) heteroraphis (Pole´jaeff, 1883)3,13 and for the Calcaronea species bacterial strains and against the yeast Candida albicans. The HPLC/ 2,13 Grantia compressa (Fabricius, 1780), might represent an UV/ELSD/MS profile of the 1:1 CH2Cl2/MeOH extract revealed advantage to better understand the origin of the secondary the presence of four metabolites belonging to the 2-aminoimidazole metabolites they produce and the putative role of their endosymbionts. alkaloid family: the new clathridimine (1), the known clathridine Calcareous sponges of the Calcinea subclass are known as sources (2), and two minor metabolites, namely, clathridine-zinc complex of 2-aminoimidazole alkaloids with more than 40 reported compounds (3) and preclathridine (4). including clathridines,14-17 naamidines and isonnamidines,17-25 and 18,19,21,22,26-29 The current report describes the isolation and purification of naamines and isonaamines. Some of these alkaloids - have promising biological activities such as antifungal,14,21 compounds 1 3, the structure elucidation of clathridimine (1), and the antimicrobial activities of 1-3. Furthermore, due to the detection of an abundant bacterial community within the sponge, morphologi- * To whom correspondence should be addressed. Tel: +33 140 795 606. Fax: +33 140 793 135. E-mail: [email protected]. cally characterized with scanning (SEM) and transmission (TEM) † Laboratoire Mole´cules de Communication et Adaptation des Micro- electron microscopy, we investigated the cellular localization of organismes. these secondary metabolites. Chemical profiles of populations ‡ Laboratoire Biologie des Organismes et des Ecosyste`mes Aquatiques. enriched either in bacteria or in cell types of C. clathrus, separated § Saint-Petersbourg State University. ⊥ Centre d’Oce´anologie de Marseille. by differential centrifugation and trypsinization of the sponge cell | Service de Microscopie Electronique. surface, are presented. 10.1021/np100175x XXXX American Chemical Society and American Society of Pharmacognosy B Journal of Natural Products, XXXX, Vol. xxx, No. xx Roue´ et al. Figure 1. HPLC/ELSD chromatogram of the CH2Cl2/MeOH extract of Clathrina clathrus. Table 1. NMR Spectroscopic Data (CDCl3) for Clathridimine (1) a no. δC, mult. δH (J in Hz) HMBC 2 147.6, C Results and Discussion 4 133.9, C 5 115.9, CH 6.39, s 2, 4 The HPLC/ELSD chromatogram of the 1:1 CH2Cl2/MeOH 7 n.o.b extract (Figure 1), after desalinization on a C18 SPE column, 9 158.5, C revealed the presence of two major compounds, 1 and 2. Successive 11 163.2, C chromatographies of the extract on reversed-phase columns led to 12 32.2, CH3 3.67, s 2, 5 the isolation of three 2-aminoimidazole alkaloids, 1-3, belonging 13 25.6, CH3 3.17, s 9, 11 ′ ′ ′ to the clathridine family, as first suggested by the UV profiles. The 14 32.8, CH2 3.88, s 4, 5, 1 ,2,6 1′ 131.2, C structures of these natural products were determined by mass 2′ 109.1, CH 6.72, s 14, 3′,4′,6′ analysis and 1D and 2D NMR spectroscopic studies. Preclathridine 3′ 147.9, C (4), previously isolated from the nudibranch Notodoris gardineri,16 4′ 146.6, C was also observed in the sponge extract, as deduced from LC/MS 5′ 105.4, CH 6.76, d (7.8) 1′,3′,4′ experiments, but the molecule was present in an amount too small 6′ 121.9, CH 6.70, d (7.8) 14, 2′,4′ ′ ′ ′ to be isolated. 7 101.0, CH2 5.93, s 3 ,4 Compound 2 was obtained as yellow crystals. Its molecular a HMBC correlations, optimized for 7 Hz, are from proton(s) stated to the indicated carbon. b n.o.: signal not unambiguously observed. formula C16H15N5O4 was obtained from its ESIMS, which showed the pseudomolecular ion [M + H]+ at m/z 342.1189, indicating the presence of 12 unsaturations in the molecule. Detailed examina- 163.2), were also reminiscent of clathridine (2) (Table 1). Com- tion of the spectroscopic data readily established its identity as parison of all these data indicated that in 1 one carbonyl group clathridine, an antifungal compound previously isolated from C. was replaced by one imino group. Its localization, out of the two 14 clathrus. possibilities (C-9 or C-11), was solved by the resonance at δC 158.5 Compound 1 was obtained as a yellow-orange solid. ESIMS corresponding to the carbon bearing the imino group in position showed the pseudomolecular ion [M + H]+ at m/z 341.1354, which C-9, as previously reported for (2E,9E)-pyronaamidine 9-(N- differed from that of clathridine (2) by only one dalton, and led to methylimine) (5), in which the ambiguity in the structure was 25 the molecular formula C16H16N6O3, implying the presence of 12 resolved through X-ray single-crystal diffraction analysis. There- unsaturations in the molecule. Comparison of its 1H
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