Historical Background of the Trust
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Twenty Thousand Parasites Under The
ADVERTIMENT. Lʼaccés als continguts dʼaquesta tesi queda condicionat a lʼacceptació de les condicions dʼús establertes per la següent llicència Creative Commons: http://cat.creativecommons.org/?page_id=184 ADVERTENCIA. El acceso a los contenidos de esta tesis queda condicionado a la aceptación de las condiciones de uso establecidas por la siguiente licencia Creative Commons: http://es.creativecommons.org/blog/licencias/ WARNING. The access to the contents of this doctoral thesis it is limited to the acceptance of the use conditions set by the following Creative Commons license: https://creativecommons.org/licenses/?lang=en Departament de Biologia Animal, Biologia Vegetal i Ecologia Tesis Doctoral Twenty thousand parasites under the sea: a multidisciplinary approach to parasite communities of deep-dwelling fishes from the slopes of the Balearic Sea (NW Mediterranean) Tesis doctoral presentada por Sara Maria Dallarés Villar para optar al título de Doctora en Acuicultura bajo la dirección de la Dra. Maite Carrassón López de Letona, del Dr. Francesc Padrós Bover y de la Dra. Montserrat Solé Rovira. La presente tesis se ha inscrito en el programa de doctorado en Acuicultura, con mención de calidad, de la Universitat Autònoma de Barcelona. Los directores Maite Carrassón Francesc Padrós Montserrat Solé López de Letona Bover Rovira Universitat Autònoma de Universitat Autònoma de Institut de Ciències Barcelona Barcelona del Mar (CSIC) La tutora La doctoranda Maite Carrassón Sara Maria López de Letona Dallarés Villar Universitat Autònoma de Barcelona Bellaterra, diciembre de 2016 ACKNOWLEDGEMENTS Cuando miro atrás, al comienzo de esta tesis, me doy cuenta de cuán enriquecedora e importante ha sido para mí esta etapa, a todos los niveles. -
Reported Siphonostomatoid Copepods Parasitic on Marine Fishes of Southern Africa
REPORTED SIPHONOSTOMATOID COPEPODS PARASITIC ON MARINE FISHES OF SOUTHERN AFRICA BY SUSAN M. DIPPENAAR1) School of Molecular and Life Sciences, University of Limpopo, Private Bag X1106, Sovenga 0727, South Africa ABSTRACT Worldwide there are more than 12000 species of copepods known, of which 4224 are symbiotic. Most of the symbiotic species belong to two orders, Poecilostomatoida (1771 species) and Siphonos- tomatoida (1840 species). The order Siphonostomatoida currently consists of 40 families that are mostly marine and infect invertebrates as well as vertebrates. In a report on the status of the marine biodiversity of South Africa, parasitic invertebrates were highlighted as taxa about which very little is known. A list was compiled of all the records of siphonostomatoids of marine fishes from southern African waters (from northern Angola along the Atlantic Ocean to northern Mozambique along the Indian Ocean, including the west coast of Madagascar and the Mozambique channel). Quite a few controversial reports exist that are discussed. The number of species recorded from southern African waters comprises a mere 9% of the known species. RÉSUMÉ Dans le monde, il y a plus de 12000 espèces de Copépodes connus, dont 4224 sont des symbiotes. La plupart de ces espèces symbiotes appartiennent à deux ordres, les Poecilostomatoida (1771 espèces) et les Siphonostomatoida (1840 espèces). L’ordre des Siphonostomatoida comprend actuellement 40 familles, qui sont pour la plupart marines, et qui infectent des invertébrés aussi bien que des vertébrés. Dans un rapport sur l’état de la biodiversité marine en Afrique du Sud, les invertébrés parasites ont été remarqués comme étant très peu connus. -
The Salmon Louse Genome: Copepod Features and Parasitic Adaptations
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.15.435234; this version posted March 16, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. The salmon louse genome: copepod features and parasitic adaptations. Supplementary files are available here: DOI: 10.5281/zenodo.4600850 Rasmus Skern-Mauritzen§a,1, Ketil Malde*1,2, Christiane Eichner*2, Michael Dondrup*3, Tomasz Furmanek1, Francois Besnier1, Anna Zofia Komisarczuk2, Michael Nuhn4, Sussie Dalvin1, Rolf B. Edvardsen1, Sindre Grotmol2, Egil Karlsbakk2, Paul Kersey4,5, Jong S. Leong6, Kevin A. Glover1, Sigbjørn Lien7, Inge Jonassen3, Ben F. Koop6, and Frank Nilsen§b,1,2. §Corresponding authors: [email protected]§a, [email protected]§b *Equally contributing authors 1Institute of Marine Research, Postboks 1870 Nordnes, 5817 Bergen, Norway 2University of Bergen, Thormøhlens Gate 53, 5006 Bergen, Norway 3Computational Biology Unit, Department of Informatics, University of Bergen 4EMBL-The European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, UK 5 Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, UK 6 Department of Biology, University of Victoria, Victoria, British Columbia, V8W 3N5, Canada 7 Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, Oluf Thesens vei 6, 1433, Ås, Norway 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.15.435234; this version posted March 16, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. -
Inventory of Parasitic Copepods and Their Hosts in the Western Wadden Sea in 1968 and 2010
INVENTORY OF PARASITIC COPEPODS AND THEIR HOSTS IN THE WESTERN WADDEN SEA IN 1968 AND 2010 Wouter Koch NNIOZIOZ KKoninklijkoninklijk NNederlandsederlands IInstituutnstituut vvooroor ZZeeonderzoekeeonderzoek INVENTORY OF PARASITIC COPEPODS AND THEIR HOSTS IN THE WESTERN WADDEN SEA IN 1968 AND 2010 Wouter Koch Texel, April 2012 NIOZ Koninklijk Nederlands Instituut voor Zeeonderzoek Cover illustration The parasitic copepod Lernaeenicus sprattae (Sowerby, 1806) on its fish host, the sprat (Sprattus sprattus) Copyright by Hans Hillewaert, licensed under the Creative Commons Attribution-Share Alike 3.0 Unported license; CC-BY-SA-3.0; Wikipedia Contents 1. Summary 6 2. Introduction 7 3. Methods 7 4. Results 8 5. Discussion 9 6. Acknowledgements 10 7. References 10 8. Appendices 12 1. Summary Ectoparasites, attaching mainly to the fins or gills, are a particularly conspicuous part of the parasite fauna of marine fishes. In particular the dominant copepods, have received much interest due to their effects on host populations. However, still little is known on the copepod fauna on fishes for many localities and their temporal stability as long-term observations are largely absent. The aim of this project was two-fold: 1) to deliver a current inventory of ectoparasitic copepods in fishes in the southern Wadden Sea around Texel and 2) to compare the current parasitic copepod fauna with the one from 1968 in the same area, using data published in an internal NIOZ report and additional unpublished original notes. In total, 47 parasite species have been recorded on 52 fish species in the southern Wadden Sea to date. The two copepod species, where quantitative comparisons between 1968 and 2010 were possible for their host, the European flounder (Platichthys flesus), showed different trends: Whereas Acanthochondria cornuta seems not to have altered its infection rate or per host abundance between years, Lepeophtheirus pectoralis has shifted towards infection of smaller hosts, as well as to a stronger increase of per-host abundance with increasing host length. -
Population Ecology and Epidemiology of Sea Lice in Canadian Waters Sonja M
The University of Maine DigitalCommons@UMaine Maine Sea Grant Publications Maine Sea Grant 2-2015 Population Ecology and Epidemiology of Sea Lice in Canadian Waters Sonja M. Saksida British Columbia Centre for Aquatic Health Sciences Ian Bricknell University of Maine, [email protected] Shawn M. C. Robinson Fisheries and Oceans Canada, St. Andrews Biological Station Simon Jones Fisheries and Oceans Canada, Pacific ioB logical Station Follow this and additional works at: https://digitalcommons.library.umaine.edu/seagrant_pub Part of the Aquaculture and Fisheries Commons, and the Population Biology Commons Repository Citation Saksida, Sonja M.; Bricknell, Ian; Robinson, Shawn M. C.; and Jones, Simon, "Population Ecology and Epidemiology of Sea Lice in Canadian Waters" (2015). Maine Sea Grant Publications. 75. https://digitalcommons.library.umaine.edu/seagrant_pub/75 This Report is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Maine Sea Grant Publications by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. Canadian Science Advisory Secretariat (CSAS) Research Document 2015/004 National Capital Region Population ecology and epidemiology of sea lice in Canadian waters S. Saksida1, I. Bricknell2, S. Robinson3 and S. Jones4 1 British Columbia Centre for Aquatic Health Sciences 871A Island Highway, Campbell River, BC V9W 2C2 2 School of Marine Sciences, University of Maine Orono, ME 04469 3 Fisheries and Oceans Canada, St. Andrews Biological Station 531 Brandy Cove Road, St. Andrews, NB E5B 2L9 4 Fisheries and Oceans Canada, Pacific Biological Station 3190 Hammond Bay Rd., Nanaimo, BC V9T 6N7 February 2015 Foreword This series documents the scientific basis for the evaluation of aquatic resources and ecosystems in Canada. -
Shellfish Diseases and Their Management in Commercial Recirculating Systems
Shellfish Diseases and Their Management in Commercial Recirculating Systems Ralph Elston AquaTechnics & Pacific Shellfish Institute PO Box 687 Carlsborg, WA 98324 Introduction Intensive culture of early life stages of bivalve shellfish culture has been practiced since at least the late 1950’s on an experimental basis. Production scale culture emerged in the 1970’s and today, hathcheries and nurseries produce large numbers of a variety of species of oysters, clams and scallops. The early life stage systems may be entirely or partially recirculating or static. Management of infectious diseases in these systems has been a challenge since their inception and effective health management is a requisite to successful culture. The diseases which affect early life stage shellfish in intensive production systems and the principles and practice of health management are the subject of this presentation. Shellfish Diseases and Management Diseases of bivalve shellfish affecting those reared or harvested from extensive culture primarily consist of parasitic infections and generally comprise the reportable or certifiable diseases. Due to the extensive nature of such culture, intervention options or disease control are limited. In contrast, infectious diseases known from early life stages in intensive culture systems tend to be opportunistic in nature and offer substantial opportunity for management due to the control that can be exerted at key points in the systems. In marine shellfish hatcheries, infectious organisms can enter the system from three sources: brood stock, seawater source and algal food source. Once an organism is established in the system, it may persist without further introduction. Bacterial infections are the most common opportunistic infection in shellfish hatcheries. -
Synopsis of the Parasites of Fishes of Canada
1 ci Bulletin of the Fisheries Research Board of Canada DFO - Library / MPO - Bibliothèque 12039476 Synopsis of the Parasites of Fishes of Canada BULLETIN 199 Ottawa 1979 '.^Y. Government of Canada Gouvernement du Canada * F sher es and Oceans Pëches et Océans Synopsis of thc Parasites orr Fishes of Canade Bulletins are designed to interpret current knowledge in scientific fields per- tinent to Canadian fisheries and aquatic environments. Recent numbers in this series are listed at the back of this Bulletin. The Journal of the Fisheries Research Board of Canada is published in annual volumes of monthly issues and Miscellaneous Special Publications are issued periodically. These series are available from authorized bookstore agents, other bookstores, or you may send your prepaid order to the Canadian Government Publishing Centre, Supply and Services Canada, Hull, Que. K I A 0S9. Make cheques or money orders payable in Canadian funds to the Receiver General for Canada. Editor and Director J. C. STEVENSON, PH.D. of Scientific Information Deputy Editor J. WATSON, PH.D. D. G. Co«, PH.D. Assistant Editors LORRAINE C. SMITH, PH.D. J. CAMP G. J. NEVILLE Production-Documentation MONA SMITH MICKEY LEWIS Department of Fisheries and Oceans Scientific Information and Publications Branch Ottawa, Canada K1A 0E6 BULLETIN 199 Synopsis of the Parasites of Fishes of Canada L. Margolis • J. R. Arthur Department of Fisheries and Oceans Resource Services Branch Pacific Biological Station Nanaimo, B.C. V9R 5K6 DEPARTMENT OF FISHERIES AND OCEANS Ottawa 1979 0Minister of Supply and Services Canada 1979 Available from authorized bookstore agents, other bookstores, or you may send your prepaid order to the Canadian Government Publishing Centre, Supply and Services Canada, Hull, Que. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
APPENDIX 1 Classified List of Fishes Mentioned in the Text, with Scientific and Common Names
APPENDIX 1 Classified list of fishes mentioned in the text, with scientific and common names. ___________________________________________________________ Scientific names and classification are from Nelson (1994). Families are listed in the same order as in Nelson (1994), with species names following in alphabetical order. The common names of British fishes mostly follow Wheeler (1978). Common names of foreign fishes are taken from Froese & Pauly (2002). Species in square brackets are referred to in the text but are not found in British waters. Fishes restricted to fresh water are shown in bold type. Fishes ranging from fresh water through brackish water to the sea are underlined; this category includes diadromous fishes that regularly migrate between marine and freshwater environments, spawning either in the sea (catadromous fishes) or in fresh water (anadromous fishes). Not indicated are marine or freshwater fishes that occasionally venture into brackish water. Superclass Agnatha (jawless fishes) Class Myxini (hagfishes)1 Order Myxiniformes Family Myxinidae Myxine glutinosa, hagfish Class Cephalaspidomorphi (lampreys)1 Order Petromyzontiformes Family Petromyzontidae [Ichthyomyzon bdellium, Ohio lamprey] Lampetra fluviatilis, lampern, river lamprey Lampetra planeri, brook lamprey [Lampetra tridentata, Pacific lamprey] Lethenteron camtschaticum, Arctic lamprey] [Lethenteron zanandreai, Po brook lamprey] Petromyzon marinus, lamprey Superclass Gnathostomata (fishes with jaws) Grade Chondrichthiomorphi Class Chondrichthyes (cartilaginous -
Observing Copepods Through a Genomic Lens James E Bron1*, Dagmar Frisch2, Erica Goetze3, Stewart C Johnson4, Carol Eunmi Lee5 and Grace a Wyngaard6
Bron et al. Frontiers in Zoology 2011, 8:22 http://www.frontiersinzoology.com/content/8/1/22 DEBATE Open Access Observing copepods through a genomic lens James E Bron1*, Dagmar Frisch2, Erica Goetze3, Stewart C Johnson4, Carol Eunmi Lee5 and Grace A Wyngaard6 Abstract Background: Copepods outnumber every other multicellular animal group. They are critical components of the world’s freshwater and marine ecosystems, sensitive indicators of local and global climate change, key ecosystem service providers, parasites and predators of economically important aquatic animals and potential vectors of waterborne disease. Copepods sustain the world fisheries that nourish and support human populations. Although genomic tools have transformed many areas of biological and biomedical research, their power to elucidate aspects of the biology, behavior and ecology of copepods has only recently begun to be exploited. Discussion: The extraordinary biological and ecological diversity of the subclass Copepoda provides both unique advantages for addressing key problems in aquatic systems and formidable challenges for developing a focused genomics strategy. This article provides an overview of genomic studies of copepods and discusses strategies for using genomics tools to address key questions at levels extending from individuals to ecosystems. Genomics can, for instance, help to decipher patterns of genome evolution such as those that occur during transitions from free living to symbiotic and parasitic lifestyles and can assist in the identification of genetic mechanisms and accompanying physiological changes associated with adaptation to new or physiologically challenging environments. The adaptive significance of the diversity in genome size and unique mechanisms of genome reorganization during development could similarly be explored. -
Ostergaard and Boxshall
Østergaard and Boxshall: Nuptial organs in female Chondracanthidae 1 Giant Females and Dwarf Males: A Comparative Study of Nuptial Organs in Female Chondracanthidae (Crustacea: Copepoda). Pia Østergaard and Geoff A. Boxshall Department of Zoology The Natural History Museum Cromwell Road London SW7 5BD England Email: [email protected] Østergaard and Boxshall: Nuptial organs in female Chondracanthidae 2 Abstract. Male chondracanthids attach to specific structures located near the genital apertures of the female. The term nuptial organ is proposed here for these structures. The morphology of the single median nuptial organ in Blias prionoti and Pseudoblias lyrifera, and of the paired nuptial organs in Acanthochondria cornuta, A. limandae, Acanthochondrites annulatus, Chondracanthodes deflexus, Chondracanthus lophii, and Lernentoma asellina is described. Nuptial organs in C. lophii were found to contain glandular tissue, so in addition to providing a site for male attachment it is possible that these glands may either play a role in pheromone production or alternatively may function in supplying nutrients for the male. It is concluded that male chondracanthids are not parasitic, but might be dependent on the female for food, which would be another rare case of nuptial feeding of males by females. Key words. Parasitic copepod, nuptial organ, morphology, ultrastructure Østergaard and Boxshall: Nuptial organs in female Chondracanthidae 3 1. INTRODUCTION Several families of parasitic copepods show marked sexual dimorphism in body size, including the Lernaeopodidae (order Siphonostomatoida) and Chondracanthidae (order Poecilostomatoida), both of which have been cited as examples of dwarf males (e.g. DE BEER 1951; CLAUS 1861; HEEGAARD 1947; KABATA 1979; NORDMANN 1864; ROUSSET & RAIBAUT 1983; WILSON 1915). -
A Synthesis Tree of the Copepoda: Integrating Phylogenetic and Taxonomic Data Reveals Multiple Origins of Parasitism
A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism James P. Bernot1,2, Geoffrey A. Boxshall3 and Keith A. Crandall1,2 1 Department of Invertebrate Zoology, Smithsonian National Museum of Natural History, Washington, DC, United States of America 2 Computational Biology Institute, Milken Institute School of Public Health, George Washington University, Washington, DC, United States of America 3 Department of Life Sciences, Natural History Museum, London, United Kingdom ABSTRACT The Copepoda is a clade of pancrustaceans containing 14,485 species that are extremely varied in their morphology and lifestyle. Not only do copepods dominate marine plank- ton and sediment communities and make up a sizeable component of the freshwater plankton, but over 6,000 species are symbiotically associated with every major phylum of marine metazoans, mostly as parasites. Unfortunately, our understanding of copepod evolutionary relationships is relatively limited in part because of their extremely divergent morphology, sparse taxon sampling in molecular phylogenetic analyses, a reliance on only a handful of molecular markers, and little taxonomic overlap between phylogenetic studies. Here, a synthesis tree method is used to integrate published phylogenies into a more comprehensive tree of copepods by leveraging phylogenetic and taxonomic data. A literature review in this study finds fewer than 500 species of copepods have been sampled in molecular phylogenetic studies. Using the Open Tree of Life platform, those taxa that have been sampled in previous phylogenetic studies are grafted together and combined with the underlying copepod taxonomic hierarchy from the Open Tree of Life Taxonomy to make a synthesis phylogeny of all copepod species.