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APBC 2013 Final Program Conference Program Image by Magnus Larsson under Creative Commons APBC 2013 | 1 Contents Welcome ....................................................................... 2 APBC 2013 Organization ............................................... 3 General Information ...................................................... 5 Keynote Speakers ..........................................................12 Conference Schedule .................................................. 14 Posters Index ................................................................. 21 Sponsors ........................................................................ 26 Notes ............................................................................. 28 2 | APBC 2013 APBC 2013 | 3 Welcome APBC 2013 Organization Dear APBC 2013 attendee, Conference Chair • Steven Jones, BC Genome Sciences Centre, Canada On behalf of the APBC 2013 organizing committee, it is a pleasure to welcome you in Vancouver, British Columbia. This is the 11th Asia-Pacific Bioinformatics Conference, and the first to extend to the Pacific coast of North America. Program Chair • S. Cenk Sahinalp, Simon Fraser University, Canada This year we will have 40 papers presented in APBC selected out of more than 100 submissions. We will also feature 3 distinguished plenary speakers Local Organizing Committee who will each provide salient insights into the application of next-generation • Inanc Birol, University of British Columbia, Canada DNA sequencing. Additionally, an industry panel on application of bioinformatics in genomic medicine will be equally thought provoking. • Cedric Chauve, Simon Fraser University, Canada With more than 40 posters in the main conference, we are expecting • Jack Chen, Simon Fraser University, Canada an exciting and lively conference. The conference is also enhanced by • Anne Condon, University of British Columbia, Canada the satellite tutorials, focusing on the issues of applying next-generation • Paul Pavlidis, University of British Columbia, Canada sequencing in cancer research. We are grateful for the efforts of Mr. Shaun • Sohrab Shah, University of British Columbia, Canada Dunn Jackman and Drs. Sohrab Shah and Olena Morozova and their colleagues for their efforts in providing these pertinent tutorial topics. Steering Committee • Phoebe Chen (Chair), La Trobe University, Australia We hope that the high quality of the technical program coupled with • Sang Yup Lee, KAIST, Korea the attractions of beautiful Vancouver will help make this APBC 2013 a memorable meeting. • Satoru Miyano, University of Tokyo, Japan • Mark Ragan, University of Queensland, Australia APBC 2013 has benefited from the voluntary contributions of many members • Limsoon Wong, National University of Singapore of the computational biology and bioinformatics community in Vancouver. • Michael Q Zhang, CHSL, USA and Tsinghua University, China Special thanks to Pheobe Chen, Steering Committee Chair, Shira Gordon, Conference Organizer, Jack Chen, Tutorial Organizer and Inanc Birol, Program Committee Industry Liason. We also thank all members of the Program, Steering and the • Tatsuya Akutsu Kyoto U, Japan Organization Committees, as well as our event coordinators and volunteers. • Rolf Backofen U Freiburg, Germany The conference would not be financially viable without our Canadian and • Joel Bader Johns Hopkins U, USA International sponsors, including, Genome BC, Genome Canada, Simon Fraser • Vineet Bafna UCSD, USA University, the UBC Genome Sciences and Technology Program, the CIHR • Niko Beerenwinkel ETH, Switzerland Bioinformatics Training Program, the Canadian Institutes of Health Research, • Inanc Birol University of British Columbia, Canada Oxford Nanopore and the Canadian Cancer Society. • Mathieu Blanchette McGill U, Canada • Paul Boutros U Toronto, Canada We wish you all a great meeting, • Vladimir Brusic Harvard U, USA • Cedric Chauve SFU, Canada Sincerely, • Phoebe Chen LaTrobe U, Australia Steven J.M. Jones & S. Cenk Sahinalp • Ting Chen USC, USA Conference Chairs • Jack Chen SFU, Canada 4 | APBC 2013 APBC 2013 | 5 General Information • Francis Chin Hong Kong U, China Conference Venue • Dirk Evers New York Genome C, USA • Robert Giegerich Bielefeld U, Germany The Hyatt Regency Vancouver • Kyungsook Han Inha U, Korea 655 Burrard Street • Wenlian Hsu Academia Sinica, Taiwan Vancouver, British Columbia • Jun Huan U Kansas, USA Canada V6C 2R7 Tel: +1 (604) 683-1234 • Hsien-Da Huang National Chiao Tung U, Taiwan Toll Free: +1 (888) 591-1234 • Steven Jones BCGSC, Canada Email: [email protected] • Tamer Kahveci U Florida, USA Website: http://vancouver.hyatt.com/ • Sun Kim Seoul National U, Korea hyatt/hotels-vancouver/ • Mehmet Koyuturk Case Western Reserve U, USA • Wentian Li Feinstein Institute, USA • Stefano Lonardi UC Riverside, USA • Bin Ma U Waterloo, Canada • Satoru Miyano U Tokyo, Japan • Shinichi Morishita U Tokyo, Japan • Teresa Przytycka NCBI, NLM, NIH, USA • Mark A. Ragan U. Queensland, Australia • S. Cenk Sahinalp SFU, Canada • Raheleh Salari Stanford U, USA • David Sankoff U Ottawa, Canada • Alexander Schoenhuth CWI, Netherlands • Russell Schwartz Carnegie Mellon U, USA • Ugur Sezerman Sabanci U, Turkey • Sohrab Shah BC Cancer Agency, Canada • Mona Singh Princeton U, USA • Fengzhu Sun USC, USA • Hong Yan City U Hong Kong, China • Yuzhen Ye Indiana U, USA • S.M. Yiu Hong Kong U, China • Xuegong Zhang Tsinghua U, China • Shuigeng Zhou Fudan U, China 6 | APBC 2013 APBC 2013 | 7 Let the luxurious Hyatt Regency Vancouver be your ideal starting point to Have a Question? explore everything this dynamic city offers. Freshly updated to reflect the Speak with someone at the conference registration desk, or ask anyone excitement and vibrancy of Vancouver, the hotel is located within the city’s with a blue staff badge. bustling business centre and is within close proximity of the unique shops of Robson Street, the greenery of Stanley Park, the Vancouver Convention Centre, and Rogers Arena, home of the National Hockey League’s Vancouver Message Board Canucks.Hyatt For business Regency Vancouver travel or vacation, reward yourself with a stay at the There will a message board at the conference registration desk. favouredHyatt Regency choice Vancouver of hotels in Vancouver, British Columbia. Conference Name Badge Hyatt Regency Vancouver Floor Plans Please wear your name badge at all times. It is your ticket for attending the tutorials, conference sessions, welcome reception and conference dinner. CONVENTION LEVEL (THIRD FLOOR) CONVENTION LEVEL (THIRD FLOOR) Name Badge Key • Staff/Volunteers - Blue • Delegates/Speakers – White Specific Requirements We have accommodated for general needs in order to make your conference experience comfortable. Should you require additional assistance, please speak with staff at the conference registration desk. Dietary Requirements We want to ensure that lunches and dinners cater to special dietary requirements. We hope you indicated any special dietary preference in FOURTH FLOOR PERSPECTIVES LEVEL (34th FLOOR) your registration form. If you missed doing so, please advise someone at The conference will take place on the third floor the conference registration desk right away. You may also need to identify of the Hyatt Regency Vancouver in meeting yourself to the catering staff. rooms entitled Regency A, B, C. Meals will be FOURTH FLOOR PERSPECTIVES LEVEL (34th FLOOR) served in Regency D, E, F. The registration desk No Smoking Policy will be located in the Regency Foyer. The Hyatt Regency Vancouver is a 100% non-smoking property. As per city bylaws you are permitted to smoke outside the hotel, at a distance The Welcome Reception and Conference Dinner of 8 meters from any doorway or air intake point. will take place on the 34th floor of the Hyatt Regency Vancouver in the English Bay, Cypress, Seymour, Grouse and Stanley rooms. Internet Access If you are a hotel guest, you will have complimentary access to the Internet. Internet is only available in your room and in the lobby area of the hotel. It is Conference Registration Desk not available on the conference level. The conference registration desk is located in the Regency Hallway of Coat Check and Baggage Storage the Hyatt Regency Vancouver and is open during the following times: There will be coat racks available inside Regency A, B, C. Please note there are no rooms for holding baggage and coats will not be monitored. • January 20, Sunday: 1:00pm – 7:00pm 06.12 • January 21, Monday: 7:00am – 2:00pm • January 22, Tuesday: 7:00am – 2:00pm Mobile Phones Please ensure that your mobile phones are turned off during all • January 23, Wednesday: 7:00am – 12:00pm conference sessions. 06.12 8 | APBC 2013 APBC 2013 | 9 Lost and Found Emergency Assistance/Medical Please provide any lost items to the conference registration desk during The emergency number in Canada is 911. Hospitals provide 24-hour registration hours. Any items that are not claimed during registration hours emergency service. The closest hospital is St. Paul’s Hospital: will be given to the Hyatt Regency Vancouver concierge. Address: 1081 Burrard Street Phone: +1(604) 682-2344 Speaker Ready Room Speakers who would like a quiet space to review their presentations can The nearest pharmacy to the hotel is Shoppers Drug Mart: use the Queen Charlotte room in the Hyatt Regency Vancouver during Address: 586 Granville Street the following times: Phone: +1 (604) 683-4063 • January 21, Monday: 7:00am – 3:00pm Post Office • January 22, Tuesday: 7:00am – 3:00pm The
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