The Biogeochemical Cycling of Phosphorus in Marine Systems
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Experiment 4
Experiment Limiting Reactant 5 A limiting reactant is the reagent that is completely consumed during a chemical reaction. Once this reagent is consumed the reaction stops. An excess reagent is the reactant that is left over once the limiting reagent is consumed. The maximum theoretical yield of a chemical reaction is dependent upon the limiting reagent thus the one that produces the least amount of product is the limiting reagent. For example, if a 2.00 g sample of ammonia is mixed with 4.00 g of oxygen in the following reaction, use stoichiometry to determine the limiting reagent. 4NH3 + 5O2 4NO + 6H2O Since the 4.00 g of O2 produced the least amount of product, O2 is the limiting reagent. In this experiment you will be given a mixture of two ionic solids, AgNO3 and K2CrO4, that are both soluble in water. When the mixture is dissolved into water they will react to form an insoluble compound, Ag2CrO4, which can be collected and weighed. The reaction is the following: 2 AgNO3(aq) + K2CrO4(aq) Ag2CrO4(s) + 2 KNO3(aq) Colorless Yellow Red colorless Precipitate Precipitate is the term used for an insoluble solid which is produced by mixing two solutions. Often the solid particles are so fine that they will pass right through the pores of a filter. Heating the solution for a while causes the particles to clump together, a process called digesting. The precipitate coagulates upon cooling and eventually settles to the bottom of a solution container. The clear liquid above the precipitate is called the supernatant. -
Review of Calculations for Organic Reactions (Assignment #1B)
Review of Calculations for Organic Reactions (Assignment #1b) In your experiments the quantities of many reactants are given in mass or volume, though chemicals react in mole ratios, because it is not possible to measure a quantity in moles easily. You will have to convert mass or volume (mass = volume x density) to moles before beginning an experiment. You will also have to recognize stoichiometric relationships between reactants and products, which is based on mole ratio, in order to be able to calculate the theoretical yield of product you expect to isolate. You will apply the knowledge from this session to complete the theoretical yield calculation in your prelab reports and postlab reports. In this lab you are expected to be able to differentiate between a limiting reagent and excess reagents, solvents and catalysts which are crucial for the reaction to occur and go to completion. A limiting reagent is a reactant that has the lowest number of moles of all reactants in the chemical reaction and once it is completely consumed the reaction terminates. An excess reagent is a reactant that has a higher number of moles and therefore is not used up when a reaction goes to completion. Solvents and catalysts are not involved in the determination of limiting reagent. An example of calculations that you will be expected to perform is shown using the reaction of phenol with nitric acid. Preparation of picric acid requires the nitration of phenol. Given 5.00 grams of phenol and 15.0 mL concentrated nitric acid (15.9 M), one can determine the MAXIMUM theoretical amount of picric acid formed. -
Fluid Mixing and the Deep Biosphere of a Fossil Lost City-Type Hydrothermal System at the Iberia Margin
Fluid mixing and the deep biosphere of a fossil Lost City-type hydrothermal system at the Iberia Margin Frieder Kleina,1, Susan E. Humphrisb, Weifu Guob, Florence Schubotzc, Esther M. Schwarzenbachd, and William D. Orsia aDepartment of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA 02543; bDepartment of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, MA 02543; cDepartment of Geosciences and Center for Marine Environmental Sciences, University of Bremen, 28334 Bremen, Germany; and dDepartment of Geosciences, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061 Edited by David M. Karl, University of Hawaii, Honolulu, HI, and approved August 4, 2015 (received for review March 7, 2015) Subseafloor mixing of reduced hydrothermal fluids with seawater is aging, brucite undersaturated in seawater dissolves and aragonite believed to provide the energy and substrates needed to support recrystallizes to calcite (7). deep chemolithoautotrophic life in the hydrated oceanic mantle (i.e., Actively venting chimneys host a microbial community with a serpentinite). However, geosphere-biosphere interactions in serpen- relatively high proportion of methanogenic archaea (the Lost tinite-hosted subseafloor mixing zones remain poorly constrained. City Methanosarcinales), methanotrophic bacteria, and sulfur- Here we examine fossil microbial communities and fluid mixing oxidizing bacteria, whereas typical sulfate-reducing bacteria are processes in the subseafloor of a Cretaceous Lost City-type hydro- rare (8–10). Geochemical evidence for significant microbial sulfate thermal system at the magma-poor passive Iberia Margin (Ocean reduction in basement lithologies and distinct microbial commu- Drilling Program Leg 149, Hole 897D). Brucite−calcite mineral assem- nities in Lost City vent fluids and chimneys suggest that subsurface blages precipitated from mixed fluids ca. -
Photoremovable Protecting Groups Used for the Caging of Biomolecules
1 1 Photoremovable Protecting Groups Used for the Caging of Biomolecules 1.1 2-Nitrobenzyl and 7-Nitroindoline Derivatives John E.T. Corrie 1.1.1 Introduction 1.1.1.1 Preamble and Scope of the Review This chapter covers developments with 2-nitrobenzyl (and substituted variants) and 7-nitroindoline caging groups over the decade from 1993, when the author last reviewed the topic [1]. Other reviews covered parts of the field at a similar date [2, 3], and more recent coverage is also available [4–6]. This chapter is not an exhaustive review of every instance of the subject cages, and its principal focus is on the chemistry of synthesis and photocleavage. Applications of indi- vidual compounds are only briefly discussed, usually when needed to put the work into context. The balance between the two cage types is heavily slanted to- ward the 2-nitrobenzyls, since work with 7-nitroindoline cages dates essentially from 1999 (see Section 1.1.3.2), while the 2-nitrobenzyl type has been in use for 25 years, from the introduction of caged ATP 1 (Scheme 1.1.1) by Kaplan and co-workers [7] in 1978. Scheme 1.1.1 Overall photolysis reaction of NPE-caged ATP 1. Dynamic Studies in Biology. Edited by M. Goeldner, R. Givens Copyright © 2005 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim ISBN: 3-527-30783-4 2 1 Photoremovable Protecting Groups Used for the Caging of Biomolecules 1.1.1.2 Historical Perspective The pioneering work of Kaplan et al. [7], although preceded by other examples of 2-nitrobenzyl photolysis in synthetic organic chemistry, was the first to apply this to a biological problem, the erythrocytic Na:K ion pump. -
DOGAMI Short Paper 8, Strategic and Critical Minerals: a Guide for Oregon
STATE OF OREGON DEPARTMENT OF GEOLOGY AND MINERAL INDUSTRIES 702 Woodlark Building Portland, Oregon G M I SHORT PAPI:R No. 8 STRATEGIC AND CRITICAL MINERALS A GUIDE lOR OREGON PROSPECTORS. By Lloyd w. Staples; Ph.D, A••latant Proteaaor ot Geology University ot Oregon . • STATE GOVIEIIINING BOAIIID W. H. ITRAYIER, CHAIIIMAN . BAKU ALBIEIIIT BURC:H MIEDP'OIID IE MACNAUGHTON ••• PDIIT\.ANO EARL K. NIXON DIIIIIECTOIII PRICIE 15 CIENTI I Oat lORD In noraal tia•• ao1t pro•p•otor• look tor gold, 1inoe that aetal u1ually otter• the �uiok••t reward and i• generally tither •a•1ly reoogn1�•d or the or• 1• •usoept• 1ble or •••Y detera1nat1on. Pro1peotor11 ln general, thus gain llttlt or no experl tno• with other •inerai• who•• peaoetlae aarkttl otter little tnoentlve tor ltaroh tor new depo1it1. Under war oondltion• th••• aineral11 needed tor produotion ot war aat erial•, beooae ot priae iaportanoe and an in1i1tent deaand i1 created tor intoraation oonoernins ooourrenoe11 aineral oharaoteri1tio11 u1e1 and aarket1. fhe Dtpartaent i1 publllhins thil paper to help aeet thil deaand in1otar &I Oreson i1 �ono�rned. Dr. Staple• 11 tlptoially qualititd to write on the lubJeot or 1trateg1o aineral1. In rtoent rear• auoh ot hll work, both 1n private praotioe and 1n teaohing1 hat been oonoerntd with thll tubJeot. It 11 boptd that tht paptr will bt ot aattrial &1111t¬ to Oregon pro1ptotor1 &1 well al to 1aall operator• who have turned their attention troa gold aintns to thole alneral depo1it1 e11ential tor war netdl. It i1 believed that 1ohool1 will al1o t1nd the paper intoraatlve and tiaely. -
Protein Measurement with the Folin Phenol Reagent*
PROTEIN MEASUREMENT WITH THE FOLIN PHENOL REAGENT* BY OLIVER H. LOWRY, NIRA J. ROSEBROUGH, A. LEWIS FARR, AND ROSE J. RANDALL (From the Department of Pharmacology, Washington University School oj Medicine, St. Louis, Missouri) (Received for publication, May 28, 1951) Since 1922 when Wu proposed the use of the Folin phenol reagent for Downloaded from the measurement of proteins (l), a number of modified analytical pro- cedures ut.ilizing this reagent have been reported for the determination of proteins in serum (2-G), in antigen-antibody precipitates (7-9), and in insulin (10). Although the reagent would seem to be recommended by its great sen- sitivity and the simplicity of procedure possible with its use, it has not www.jbc.org found great favor for general biochemical purposes. In the belief that this reagent, nevertheless, has considerable merit for certain application, but that its peculiarities and limitations need to be at Washington University on June 25, 2009 understood for its fullest exploitation, it has been studied with regard t.o effects of variations in pH, time of reaction, and concentration of react- ants, permissible levels of reagents commonly used in handling proteins, and interfering subst.ances. Procedures are described for measuring pro- tein in solution or after precipitation wit,h acids or other agents, and for the determination of as little as 0.2 y of protein. Method Reagents-Reagent A, 2 per cent N&OX in 0.10 N NaOH. Reagent B, 0.5 per cent CuS04.5Hz0 in 1 per cent sodium or potassium tartrabe. Reagent C, alkaline copper solution. -
Biochemistry Panel Plus
Piccolo® BioChemistry Panel Plus For In Vitro Diagnostic Use and Professional Use Only Customer and Technical Service: 1-800-822-2947 Customers outside the US: +49 6155 780 210 Abaxis, Inc. ABAXIS Europe GmbH 3240 Whipple Rd. Bunsenstr. 9-11 Union City, CA 94587 64347 Griesheim USA Germany 1. Intended Use The Piccolo® BioChemistry Panel Plus, used with the Piccolo Xpress® chemistry analyzer, is intended to be used for the in vitro quantitative determination of alanine aminotransferase (ALT), albumin, alkaline phosphatase (ALP), amylase, aspartate aminotransferase (AST), c-reactive protein (CRP), calcium, creatinine, gamma glutamyltransferase (GGT), glucose, total protein, blood urea nitrogen (BUN), and uric acid in lithium heparinized whole blood, lithium heparinized plasma, or serum in a clinical laboratory setting or point-of-care location. The Abaxis CRP method is not intended for high sensitivity CRP measurement. 2. Summary and Explanation of Tests The Piccolo BioChemistry Panel Plus and the Piccolo Xpress chemistry analyzer comprise an in vitro diagnostic system that aids the physician in diagnosing the following disorders. Alanine aminotransferase (ALT): Liver diseases, including viral hepatitis and cirrhosis. Albumin: Liver and kidney diseases. Alkaline phosphatase (ALP): Liver, bone, parathyroid, and intestinal diseases. Amylase: Pancreatitis. Aspartate aminotransferase (AST): Liver disease including hepatitis and viral jaundice, shock. C-Reactive Protein (CRP): Infection, tissue injury, and inflammatory disorders. Calcium: Parathyroid, bone and chronic renal diseases; tetany. Creatinine: Renal disease and monitoring of renal dialysis. Gamma glutamyltransferase (GGT): Liver diseases, including alcoholic cirrhosis and primary and secondary liver tumors. Glucose: Carbohydrate metabolism disorders, including adult and juvenile diabetes mellitus and hypoglycemia. Total protein: Liver, kidney, bone marrow diseases; metabolic and nutritional disorders. -
Experimental Investigations of the Reaction Path in the Mgo–CO2
Available online at www.sciencedirect.com Applied Geochemistry Applied Geochemistry 23 (2008) 1634–1659 www.elsevier.com/locate/apgeochem Experimental investigations of the reaction path in the MgO–CO2–H2O system in solutions with various ionic strengths, and their applications to nuclear waste isolation Yongliang Xiong *, Anna Snider Lord Sandia National Laboratories, Carlsbad Programs Group, 4100 National Parks Highway, Carlsbad, NM 88220, USA1 Received 26 June 2007; accepted 25 December 2007 Editorial handling by Z. Cetiner Available online 9 February 2008 Abstract The reaction path in the MgO–CO2–H2O system at ambient temperatures and atmospheric CO2 partial pressure(s), especially in high-ionic-strength brines, is of both geological interest and practical significance. Its practical importance lies mainly in the field of nuclear waste isolation. In the USA, industrial-grade MgO, consisting mainly of the mineral peri- clase, is the only engineered barrier certified by the Environmental Protection Agency (EPA) for emplacement in the Waste Isolation Pilot Plant (WIPP) for defense-related transuranic waste. The German Asse repository will employ a Mg(OH)2- based engineered barrier consisting mainly of the mineral brucite. Therefore, the reaction of periclase or brucite with car- bonated brines with high-ionic-strength is an important process likely to occur in nuclear waste repositories in salt forma- tions where bulk MgO or Mg(OH)2 will be employed as an engineered barrier. The reaction path in the system MgO–CO2– H2O in solutions with a wide range of ionic strengths was investigated experimentally in this study. The experimental results at ambient laboratory temperature and ambient laboratory atmospheric CO2 partial pressure demonstrate that hyd- romagnesite (5424) (Mg5(CO3)4(OH)2 Á 4H2O) forms during the carbonation of brucite in a series of solutions with differ- ent ionic strengths. -
Brucite Mg(OH)2 C 2001-2005 Mineral Data Publishing, Version 1
Brucite Mg(OH)2 c 2001-2005 Mineral Data Publishing, version 1 Crystal Data: Hexagonal. Point Group: 32/m. Crystals tabular {0001}, to 19 cm, in platy or foliated masses and rosettes; also fibrous, to 50 cm; granular, massive. Physical Properties: Cleavage: {0001}, perfect. Tenacity: Sectile; separable plates are flexible, fibers are elastic. Hardness = 2.5 D(meas.) = 2.39 D(calc.) = 2.368 Pyroelectric. Optical Properties: Transparent. Color: White, pale green, blue, gray; honey-yellow to brownish red and deep brown in manganoan varieties; colorless in transmitted light. Streak: White. Luster: Waxy, pearly on cleavage surfaces. Optical Class: Uniaxial (+); anomalously biaxial. ω = 1.56–1.59 = 1.58–1.60 2V(meas.) = Small. Cell Data: Space Group: P 3m1..a = 3.142(1) c = 4.766(2) Z=1 X-ray Powder Pattern: Synthetic. 2.365 (100), 4.77 (90), 1.794 (55), 1.573 (35), 1.494 (18), 1.373 (16), 1.310 (12) Chemistry: (1) (2) (3) Fe2O3 0.10 1.95 FeO 9.57 MnO 0.84 MgO 68.29 60.33 69.11 H2O 30.74 28.60 30.89 Total 99.97 100.45 100.00 (1) Wood’s Chrome mine, Pennsylvania, USA; corresponds to (Mg0.99Fe0.01)Σ=1.00(OH)2. (2) Asbestos, Canada; after deduction of Fe2O3 impurity, corresponds to 2+ (Mg0.93Fe0.08)Σ=1.01(OH)2. (3) Mg(OH)2. Mineral Group: Brucite group. Occurrence: A common alteration of periclase in marble; a low-temperature hydrothermal vein mineral in metamorphic limestones and chlorite schists; formed during serpentinization of dunites. -
Chemical Redox Agents for Organometallic Chemistry
Chem. Rev. 1996, 96, 877−910 877 Chemical Redox Agents for Organometallic Chemistry Neil G. Connelly*,† and William E. Geiger*,‡ School of Chemistry, University of Bristol, U.K., and Department of Chemistry, University of Vermont, Burlington, Vermont 05405-0125 Received October 3, 1995 (Revised Manuscript Received January 9, 1996) Contents I. Introduction 877 A. Scope of the Review 877 B. Benefits of Redox Agents: Comparison with 878 Electrochemical Methods 1. Advantages of Chemical Redox Agents 878 2. Disadvantages of Chemical Redox Agents 879 C. Potentials in Nonaqueous Solvents 879 D. Reversible vs Irreversible ET Reagents 879 E. Categorization of Reagent Strength 881 II. Oxidants 881 A. Inorganic 881 1. Metal and Metal Complex Oxidants 881 2. Main Group Oxidants 887 B. Organic 891 The authors (Bill Geiger, left; Neil Connelly, right) have been at the forefront of organometallic electrochemistry for more than 20 years and have had 1. Radical Cations 891 a long-standing and fruitful collaboration. 2. Carbocations 893 3. Cyanocarbons and Related Electron-Rich 894 Neil Connelly took his B.Sc. (1966) and Ph.D. (1969, under the direction Compounds of Jon McCleverty) degrees at the University of Sheffield, U.K. Post- 4. Quinones 895 doctoral work at the Universities of Wisconsin (with Lawrence F. Dahl) 5. Other Organic Oxidants 896 and Cambridge (with Brian Johnson and Jack Lewis) was followed by an appointment at the University of Bristol (Lectureship, 1971; D.Sc. degree, III. Reductants 896 1973; Readership 1975). His research interests are centered on synthetic A. Inorganic 896 and structural studies of redox-active organometallic and coordination 1. -
Organic Chemistry I: Reactions and Overview
Organic Chemistry I: Reactions and Overview Andrew Rosen Editor: Raghav Malik January 13, 2013 Contents I Library of Synthetic Reactions 3 II Organic Trends and Essentials 4 1 The Basics: Bonding and Molecular Structure 4 1.1 Resonance Stability . 4 2 Families of Carbon Compounds 4 2.1 Strength of London Dispersion Forces (Polarizability) . 4 2.2 Degree of Unsaturation . 4 3 An Introduction to Organic Reactions and Their Mechanisms 4 3.1 Comparing Acid Strengths . 4 4 Nomenclature and Conformations of Alkanes and Cycloalkanes 5 4.1 Ring Flipping . 5 5 Stereochemistry 5 5.1 Naming Enantiomers via the -R and -S System . 5 5.2 Stereochemistry Examples . 6 6 Ionic Reactions - Overview 6 6.1 General Nucleophilic Substitution Reactions . 6 6.2 Carbocation Stability . 6 6.3 Factors Aecting the Rates of SN 1 and SN 2 Reactions . 6 6.4 Elimination Reactions . 7 6.5 Summary . 7 7 Alkenes and Alkynes I - Overview 8 7.1 The E-Z System . 8 7.2 Relative Stabilities of Alkenes . 8 7.3 Factors Aecting Elimination Reactions . 8 7.4 Acid-Catalyzed Dehydration of Alcohols . 8 1 III Reaction Mechanisms 9 8 Ionic Reactions - Mechanisms 9 8.1 The SN 2 Reaction . 9 8.2 The SN 1 Reaction . 10 8.3 The E2 Reaction . 10 8.4 The E1 Reaction . 11 9 Alkenes and Alkynes I - Mechanisms 11 9.1 Acid-Catalyzed Dehydration of Secondary or Tertiary Alcohols: An E1 Reaction . 11 9.2 Acid-Catalyzed Dehydration of Primary Alcohols: An E2 Reaction . 12 9.3 Synthesis of Alkynes from Vic-Dihalides . -
Granasen, a Dolomite-Brucite Deposit with Potential for Industrial Development
NGU -BULL 436, 2000 - PAGE 75 Granasen, a dolomite-brucite deposit with potential for industrial development ODD 0VERENG 0vereng, O. 2000: Granasen, a do lomite-brucite deposi t wi th pote ntial for indust rial develo pm ent. Norges geolog iske und ersekelse Bulletin 436, 75-84. Granasen, situated close to Mo sjoen in north ern Norway, is a deposit containing several milli on tonn es of dolomite and brucite. The deposit has been investig ated and characte rised in preparati on fo r future deve lopment and exploitation. The ore consists of dol omi te and brucite . Brucite has fo rmed as a result of hydro th ermal alte rat ion associated with intrusion of gabbro. Tests have been carried out to evaluate the com mercial value of the dolom ite resources. A variet y of different bene ficiation met hods were investigated to achieve co mmerc ial concent rates of brucite . The most successful result was obtai ned by selective flocculat ion , w hich up-gr ades th e ore to a maximum gra de of 95.5 % brucite, with a recovery of 80 %. As an alte rnative, or by-product of bru cite concent rate produ ction, th e deposit cou ld also be w orked for dolomite. Odd 0vereng, Norgesgeologi ske undersekelse,N-749 1 Trondh eim, Norw ay. of th e Granasen dol om it e marble (Faye & 0 vereng 1979). Introduction Extensive mi neralogical and geo log ical investigat ions, Since the beg inning of the 1970s, the Geologica l Survey of including diamond drill ing, were carried out in 1979 and Norway (NGU) has investigated a large number of indu strial 1980 (0 vereng 1981), and confirmed th e interpretation th at min eral occurrence s.