ENDEMISM: ORIGINS and IMPLICATIONS a Myers, S De Grave
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A Classification of Living and Fossil Genera of Decapod Crustaceans
RAFFLES BULLETIN OF ZOOLOGY 2009 Supplement No. 21: 1–109 Date of Publication: 15 Sep.2009 © National University of Singapore A CLASSIFICATION OF LIVING AND FOSSIL GENERA OF DECAPOD CRUSTACEANS Sammy De Grave1, N. Dean Pentcheff 2, Shane T. Ahyong3, Tin-Yam Chan4, Keith A. Crandall5, Peter C. Dworschak6, Darryl L. Felder7, Rodney M. Feldmann8, Charles H. J. M. Fransen9, Laura Y. D. Goulding1, Rafael Lemaitre10, Martyn E. Y. Low11, Joel W. Martin2, Peter K. L. Ng11, Carrie E. Schweitzer12, S. H. Tan11, Dale Tshudy13, Regina Wetzer2 1Oxford University Museum of Natural History, Parks Road, Oxford, OX1 3PW, United Kingdom [email protected] [email protected] 2Natural History Museum of Los Angeles County, 900 Exposition Blvd., Los Angeles, CA 90007 United States of America [email protected] [email protected] [email protected] 3Marine Biodiversity and Biosecurity, NIWA, Private Bag 14901, Kilbirnie Wellington, New Zealand [email protected] 4Institute of Marine Biology, National Taiwan Ocean University, Keelung 20224, Taiwan, Republic of China [email protected] 5Department of Biology and Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602 United States of America [email protected] 6Dritte Zoologische Abteilung, Naturhistorisches Museum, Wien, Austria [email protected] 7Department of Biology, University of Louisiana, Lafayette, LA 70504 United States of America [email protected] 8Department of Geology, Kent State University, Kent, OH 44242 United States of America [email protected] 9Nationaal Natuurhistorisch Museum, P. O. Box 9517, 2300 RA Leiden, The Netherlands [email protected] 10Invertebrate Zoology, Smithsonian Institution, National Museum of Natural History, 10th and Constitution Avenue, Washington, DC 20560 United States of America [email protected] 11Department of Biological Sciences, National University of Singapore, Science Drive 4, Singapore 117543 [email protected] [email protected] [email protected] 12Department of Geology, Kent State University Stark Campus, 6000 Frank Ave. -
Redalyc.Assessment of the Decapod Crustacean Diversity in the Guayana
Biota Neotropica ISSN: 1676-0611 [email protected] Instituto Virtual da Biodiversidade Brasil Magalhães, Célio; Pereira, Guido Assessment of the decapod crustacean diversity in the Guayana Shield region aiming at conservation decisions Biota Neotropica, vol. 7, núm. 2, mayo-agosto, 2007, pp. 111-124 Instituto Virtual da Biodiversidade Campinas, Brasil Available in: http://www.redalyc.org/articulo.oa?id=199114293013 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Assessment of the decapod crustacean diversity in the Guayana Shield region aiming at conservation decisions Célio Magalhães1,3 & Guido Pereira2 Biota Neotropica v7 (n2) – http://www.biotaneotropica.org.br/v7n2/pt/abstract?article+bn02007022007 Recebido em 13/09/06 Versão Reformulada recebida em 04/04/07 Publicado em 15/05/07 1Instituto Nacional de Pesquisas da Amazônia, CP 478, CEP 69011-970, Manaus, AM, Brazil 2Instituto de Zoología Tropical, Universidad Central de Venezuela, Apartado 47058, Caracas, 1041-A, Venezuela 3Autor para correspondência: Célio Magalhães, e-mail: [email protected] Abstract Magalhães C. & Pereira, G. Assessment of the decapod crustacean diversity in the Guayana Shield region aiming at conservation decisions. Biota Neotrop. May/Aug 2007 vol. 7, no. 2. http://www.biotaneotropica.org. br/v7n2/pt/abstract?article+bn02007022007. ISSN 1676-0603. The current state of knowledge of freshwater decapod crustacean diversity of the Guayana Shield Region is briefly assessed, based upon information gathered from the scientific literature as well as unpublished data from academic theses, technical reports, and carcinological collections. -
Chapter 7 Phylogenesis Versus
108 The Evolution of Culturol Diversity Clades Lineages CHAPTER 7 PHYLOGENESIS VERSUS ETHNOGENESIS IN vvvv TURKMEN CULTURAL EVOLUTION vv v Mark Collard and Jamshid Tehrani INTRODUCTION The processes responsible for producing the similarities and differences among cultures have been the focus of much debate in recent years, as has the corollary vv issue of linking cultural data with the patterns recorded by linguists and Figure 6.10 Clodes versus lineages. All nine diagrams represent the same hiologists working with human populations (eg, Romney 1957; Vogt 1964; phylogeny, with clades highlighted on the left and lineages on the tight Chakraborty ct a11976; Brace and Hinton 1981; Cavalli-Sforza and Feldman 1981; Additional lineages can be counted from various internal nodes to the branch Lumsden and Wilson 1981~ Ammerman and Cavalli-Sforza 1984; Boyd and tips (after de Quelroz 1998). Richerson 1985; Terrell 1986, 1988; Kirch and Green 1987, 2001; Renfrew 19H7, 1992, 2000b, 2001; Atkinson 1989; Croes 1989; Bateman et a11990; Durham 1990, Archaeologists are uniquely capable of ans\vering these questions, and cladistics 1991,1992; Moore 1994b; Cavalli-Sforza and Cavalli-Sforza 1995; Guglielmino et a[ offers a means to answer them. 19Q5; Laland et af 1995; Zvelebil 1995; Bellwood 1996a, 2001; Boyd clal 1997~ But are we simply borrowing techniques of biological origin \vithout a firm Shennan 2000, 2002; Smith 2001; Whaley 2001; Terrell cI ill 20CH; Jordan dnd basis for so doing? No. We view cultural phenomena as residing in a series of Shennan 2003). To date, this debate has concentrated on two cornpeting nested hierarchies that comprise traditions, or lineages, at ever more-inclusive hypotheses, which have been termed the 'genetic', 'demie diffusion', 'branching' scales and that are held together by cultural as \veU as genetic transmission. -
Thesis (PDF, 13.51MB)
Insects and their endosymbionts: phylogenetics and evolutionary rates Daej A Kh A M Arab The University of Sydney Faculty of Science 2021 A thesis submitted in fulfilment of the requirements for the degree of Doctor of Philosophy Authorship contribution statement During my doctoral candidature I published as first-author or co-author three stand-alone papers in peer-reviewed, internationally recognised journals. These publications form the three research chapters of this thesis in accordance with The University of Sydney’s policy for doctoral theses. These chapters are linked by the use of the latest phylogenetic and molecular evolutionary techniques for analysing obligate mutualistic endosymbionts and their host mitochondrial genomes to shed light on the evolutionary history of the two partners. Therefore, there is inevitably some repetition between chapters, as they share common themes. In the general introduction and discussion, I use the singular “I” as I am the sole author of these chapters. All other chapters are co-authored and therefore the plural “we” is used, including appendices belonging to these chapters. Part of chapter 2 has been published as: Bourguignon, T., Tang, Q., Ho, S.Y., Juna, F., Wang, Z., Arab, D.A., Cameron, S.L., Walker, J., Rentz, D., Evans, T.A. and Lo, N., 2018. Transoceanic dispersal and plate tectonics shaped global cockroach distributions: evidence from mitochondrial phylogenomics. Molecular Biology and Evolution, 35(4), pp.970-983. The chapter was reformatted to include additional data and analyses that I undertook towards this paper. My role was in the paper was to sequence samples, assemble mitochondrial genomes, perform phylogenetic analyses, and contribute to the writing of the manuscript. -
New Records of Fredius Denticulatus (H. Milne-Edwards, 1853) and F. Reflexifrons (Ortmann, 1897), and the Eastern Limits Of
New records of Fredius denticulatus (H. Milne-Edwards, 1853) and F. reflexifrons (Ortmann, 1897), and the eastern limits of the distribution of pseudothelphusid crabs (Crustacea: Decapoda) in Brazil. Célio MAGALHÃES1,4; Fernando Araujo ABRUNHOSA2; Milena de Oliveira PEREIRA3; Marlon Aguiar MELO2 ABSTRACT The occurence of Fredius reflexifrons (Ortmann, 1897), a pseudothelphusid crab widely distributed in the Amazon region and the Atlantic Guianas, is recorded from the state of Ceará, northeastern Brazil. Other records of this species and Fredius denticulatus (H. Milne-Edwards, 1853) from the Amazon region are also presented. A discussion is made on the eastern limits of the distribution of the family Pseudothelphusidae in Brazil. KEY WORDS Pseudothelphusidae, Fredius, taxonomy, geographical distribution, new records Novos registros de Fredius denticulatus (H. Milne-Edwards, 1853) e F. reflexifrons Ortmann, 1897) e o limite oriental da distribuição dos carangueijos da família Pseudothelphusidae (Crustacea: Decapoda) no Brasil. RESUMO É registrada pela primeira vez a ocorrência de Fredius reflexifrons (Ortmann, 1897), um caranguejo da família Pseudothelphusidae de ampla distribuição na Amazônia e nas Guianas, no estado do Ceará, Nordeste do Brazil. São feitos registros adicionais de dessa espécie e de Fredius denticulatus (H. Milne-Edwards, 1853) para a região amazônica. É feita uma discussão sobre os limites orientais da distribuição da família Pseudothelphusidae no Brasil. PALAVRAS-CHAVE Pseudothelphusidae, Fredius, taxonomia, distribuição geográfica, novos registros INTRODUCTION poorly know in the region, especially in its southern and eastern parts, in spite of recent descriptions of new species from these The distributional range of the freshwater crab family areas (Magalhães, 2003, 2004). Pseudothelphusidae spans from northern Mexico to Peru and Three species of Fredius Pretzmann, 1965 are known from Brazil, in South America (Rodríguez, 1982), where it reaches as Brazil. -
Journal of Pharmacology and Toxicological Studies
e-ISSN: 2319-9873 p-ISSN: 2347-2324 Research & Reviews: Journal of Pharmacology and Toxicological Studies A Short Study on Phylogenetics Indu Sama* Department of plant Pathology and forest genetics, Bharat University, India Review Article ABSTRACT Received: 06/09/2016 Accepted : 09/09/2016 Published: 12/09/2016 In science, phylogenetics is the investigation of transformative *For Correspondence connections among gatherings of life forms (e.g. species,populations), which are found through atomic sequencing information and morphological information grids. The term phylogeneticsderives from the Greek Department of plant Pathology expressions phylé (φυλή) and phylon (φῦλον), meaning "tribe", "faction", and forest genetics, Bharat "race" and the descriptive structure, genetikós(γενετικός), of the word University, India genesis (γένεσις) "source", "source", "conception". Indeed, phylogenesis is the procedure, phylogeny is science on this procedure, and phylogenetics is E-mail: [email protected] phylogeny in view of examination of successions of organic macromolecules (DNA, RNA and proteins, in the first). The consequence of phylogenetic Keywords: Phylogenetics, studies is a speculation about the developmental history of taxonomic Devolopment, Computation gatherings: their phylogeny. INTRODUCTION Development is a procedure whereby populaces are modified over the long run and may part into particular branches, hybridize together, or end by elimination [1 -15]. The transformative expanding procedure may be portrayed as a phylogenetic tree, and the spot of each of the different living beings on the tree is in view of a speculation about the arrangement in which developmental spreading occasions happened. Inhistorical phonetics, comparative ideas are utilized regarding connections in the middle of dialects; and in literary feedback withstemmatics [15-25]. -
Recent Advances in the Biology of the Neotropical Freshwater Crab Family Pseudothelphusidae (Crustacea, Decapoda, Brachyura)
Recent advances in the biology of the Neotropical freshwater crab family Pseudothelphusidae (Crustacea, Decapoda, Brachyura) Gilberto Rodríguez 1 & Célio Magalhães 2 1 Centro de Ecología, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela. (In memoriam) 2 Author for correspondence. Instituto Nacional de Pesquisas do Amazônia, Caixa postal 478, 69011-970 Manaus, Amazonas, Brasil. Research fellow of the CNPq. E-mail: [email protected] ABSTRACT. Pseudothelphusidae is a well diversified group of Neotropical freshwater crabs currently compris- ing 40 genera and at least 255 species and subspecies. The biology of these crabs has been an active field of research in the last 20 years. The aim of the present contribution is to discuss the significance of the new knowledge on the biology of these freshwater crabs after September 1992, to stress the interconnection of the diverse lines of research and at the same time to suggest promising new lines of investigation. All taxa described from September 1992 to October 2004 are listed, including one genus, one subgenus, 62 species and five subspecies. The implications of this new knowledge on the taxonomy, systematic and biogeography of the family are commented. KEY WORDS. Biodiversity, biogeography, Neotropical region, taxonomy. RESUMO. Avanços recentes no estudo da biologia dos caranguejos de água doce neotropicais da família Pseudothelphusidae (Crustaceaustacea, Decapodapoda, Brachyura). Pseudothelphusidae é um grupo bem diversificado de caranguejos de água doce neotropicais que compreende atualmente 40 gêneros e pelo menos 255 espécies e subespécies. A biologia desses caranguejos vem sendo um ativo campo de pesquisa nos últimos 20 anos. O objetivo desta contribuição é discutir o significado do conhecimento adquirido sobre a biologia desses caran- guejos dulcícolas após setembro de 1992, enfatizar a relação das diversas linhas de pesquisa e, ao mesmo tempo, sugerir novas linhas promissoras de investigação. -
Phylogenomics of Reichenowia Parasitica, an Alphaproteobacterial Endosymbiont of the Freshwater Leech Placobdella Parasitica
City University of New York (CUNY) CUNY Academic Works Publications and Research CUNY Graduate Center 2011 Phylogenomics of Reichenowia parasitica, an Alphaproteobacterial Endosymbiont of the Freshwater Leech Placobdella parasitica Sebastian Kvist American Museum of Natural History Apurva Narechania American Museum of Natural History Alejandro Oceguera-Figueroa CUNY Graduate Center Bella Fuks Long Island University Mark E. Siddall American Museum of Natural History How does access to this work benefit ou?y Let us know! More information about this work at: https://academicworks.cuny.edu/gc_pubs/365 Discover additional works at: https://academicworks.cuny.edu This work is made publicly available by the City University of New York (CUNY). Contact: [email protected] Phylogenomics of Reichenowia parasitica,an Alphaproteobacterial Endosymbiont of the Freshwater Leech Placobdella parasitica Sebastian Kvist1,2*, Apurva Narechania3, Alejandro Oceguera-Figueroa2,4, Bella Fuks5, Mark E. Siddall2,3 1 Richard Gilder Graduate School, American Museum of Natural History, New York, New York, United States of America, 2 Division of Invertebrate Zoology, American Museum of Natural History, New York, New York, United States of America, 3 Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, United States of America, 4 Department of Biology, The Graduate Center, The City University of New York, New York, New York, United States of America, 5 Long Island University Brooklyn Campus, Brooklyn, New York, United States of America Abstract Although several commensal alphaproteobacteria form close relationships with plant hosts where they aid in (e.g.,) nitrogen fixation and nodulation, only a few inhabit animal hosts. Among these, Reichenowia picta, R. -
New Species, Cladistic Relationships, and Biogeography of the Genus Fredius (Decapoda: Brachyura: Pseudothelphusidae) from South America
JOURNAL OF CRUSTACEAN BIOLOGY, 12(2): 298-311, 1992 NEW SPECIES, CLADISTIC RELATIONSHIPS, AND BIOGEOGRAPHY OF THE GENUS FREDIUS (DECAPODA: BRACHYURA: PSEUDOTHELPHUSIDAE) FROM SOUTH AMERICA Gilberto Rodriguez and Guido Pereira ABSTRACT The taxonomy of the genus Fredius Pretzmann, 1967, is reviewed, and new taxa are described: Fredius adpressus, F. adpressus piaroensis, F. platyacanthus, and F. estevisi siapensis. The 8 species of this genus inhabit 4 major basins of different geological age in northern South America. The Orinoco basin is the oldest, followed by the Essequibo-Cuyuni basin. The lower Amazon basin, formed from Tertiary to Holocene by alluvionic deposition, is younger than these two. The Atlantic area, formed mainly by marine regressions, is the youngest. The phy- logenetic relationships within Fredius, studied by means of a cladistic analysis, were compared with the relationships of these areas using Brooks parsimony analysis. The phylogenetic data fully agree with the area cladogram. The position of the ancestors within the area cladogram shows that most of them were present in a hypothetical major basin comprising the present Orinoco, Essequibo, and Cuyuni rivers, and that much of the evolution of the group occurred there. There is some ambiguity about the possible origin of 2 widespread species. The most parsimonious explanation for one of them is that it originated in the Atlantic drainage and then dispersed into the lower Amazon basin. The genus Fredius Pretzmann, 1967, near Puerto Ayacucho; (2) The Cuao River, a minor comprises five species of large fresh-water tributary of the Orinoco, near Puerto Ayacucho; (3) The Parguaza River, another minor tributary of the crabs restricted to the Guianas and the Am Orinoco, north of the Cuao River; (4) The Cunucun- azon basin, where they inhabit, with one uma River, an affluent of the Orinoco, with its head exception, the lowland rivers. -
Assessing Phylogenetic Accuracy
Assessing Phylogenetic Accuracy A simulation study Theodoor Heijerman CENTRALE LANDBOUW CATALO GU S 0000067 0060 9 Promotor: Dr R. J. Post, hoogleraar in de diertaxonomie fiuoft-iof, \*iQy Assessing Phylogenetic Accuracy A simulation study Theodoor Heijerman Proefschrift ter verkrijging van de graad van doctor in de landbouw- en milieuwetenschappen op gezag van de rector magnificus, dr C. M. Karssen, in het openbaar te verdedigen op woensdag 27 september 1995 des namiddags te vier uur in de Aula van de Landbouwuniversiteit te Wageningen 0 SVI a1 (H>^ LA2\!ï>(JüL",VLK'V;:F.>i^lïiT YY*/.-::^- i-'.N CIP-GEGEVENS KONINKLIJKE BIBLIOTHEEK, DEN HAAG Heijerman, Theodoor Assessing phylogenetic accuracy : a simulation study / Theodoor Heijerman. - [S.I. : s.n.] (Wageningen : Ponsen & Looijen) Thesis Landbouw Universiteit Wageningen. - With réf. - With summary in Dutch. ISBN 90-5485-422-7 Subject headings: phylogenesis / animal taxonomy. Cover: 'n kroezen boom Stellingen Het getuigt van te veel optimisme ten aanzien van het prestatievermogen van numeriek taxonomische methoden, wanneer deze worden aangeduid als fylogenie-reconstructie-methoden. (dit proefschrift; F. J. Rohlf & M. C. Wooten, 1988. Evaluation of the restricted maximum-likelihood method for estimating phylogenetic trees using simulated allele-frequency data. — Evolution 42: 581-595). Het beschikbaar komen van steeds gebruikersvriendelijker programma's voor cladistische analyses, zal de gemiddelde kwaliteit van de resultaten van deze programma's doen afnemen. Het is sterk aan te bevelen om bij de presentatie van de resultaten van een cladistische analyse, niet alleen de meest parsimone, maar ook sub-optimale oplossingen te geven. De toepassing van fenetische technieken om verwantschapsrelaties te bepalen, is ten onrechte in onbruik geraakt. -
Crustacea: Decapoda: Pseudothelphusidae
ANARTIA, 25 (2013 “2015”): 64 - 94 ISSN: 1315-642X urn:lsid:zoobank.org:pub:5A6BF416-41F9-46AD-88B0-47CBC9674966 Six New Species of Freshwater Crabs from Pantepui, Venezuela (Crustacea: Decapoda: Pseudothelphusidae) Héctor Suárez Centro de Ecología, Instituto Venezolano de Investigaciones Científicas, Apartado Postal 21827, Caracas 1020A, Venezuela. Correo electrónico: [email protected] Abstract Six new species of pseudothelphusid crabs (Crustacea: Deca- poda: Brachyura) are described from several rivers of the Pantepui re- gion of Venezuela, in the states of Amazonas and Bolívar: Microthel- phusa aracamuniensis, n. sp., M. guaiquinimaensis, n. sp., M. maiguali- daensis, n. sp., M. marahuacaensis, n. sp., M. roraimaensis, n. sp., and Fredius cuaoensis, n. sp. Keywords: Brachyura, Cerro Guaiquinima, Cerro Marahuaca, Fre- dius, Microtelphusa, Monte Aracamuni, Serranía de Mai- gualida, Río Cuao, Roraima. Seis nuevas especies de cangrejos de agua dulce del Pantepui, Venezuela (Crustacea: Decapoda: Pseudothelphusidae) Resumen Se describen seis nuevas especies de cangrejos pseudotelfúsidos (Crustacea: Decapoda: Brachyura) procedentes de varios ríos de la región pantepuyana de Venezuela, en los estados Amazonas y Bolí- var: Microthelphusa aracamuniensis, n. sp., M. guaiquinimaensis, n. sp., New species of freshwater crabs from Pantepui 65 M. maigualidaensis, n. sp. M. marahuacaensis, n. sp., M. roraimaensis, n. sp.,yFredius cuaoensis, n. sp. Palabras clave: Brachyura, Cerro Guaiquinima, Cerro Marahuaca, Fredius, Microtelphusa, Monte Aracamuni, Serranía de Maigualida, Río Cuao, Roraima. INTRODUCTION The mountains of the Guiana Shield are located between the Río Orinoco to the North and the Río Negro to the South, in North- ern South America. Its highest prominence is the Pico da Neblina (3045 m). This group of mountain systems is developed essentially over two geological substrates: a basement of igneous-metamorphic rocks (acid granites) and a layer of sedimentary rocks (sandstones) deposited over that basement (Maguire 1979). -
PHYLOGENETIC SYSTEMATICS OR NELSON's VERSION of CLADISTICS? Kevin De Queiroz''^ and Michael J. Donoghue^ ^Department of Zoology
FORUM Cladistics (1990)6:61-75 PHYLOGENETIC SYSTEMATICS OR NELSON'S VERSION OF CLADISTICS? Kevin de Queiroz''^ and Michael J. Donoghue^ ^Department of Zoology and Museum of Vertebrate Zoology, University of California, Berkeley, CA 94720, U.S.A. '^Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, U.S.A. In as much as our paper (de Queiroz and Donoghue, 1988) was intended to be a contribution to, rather than a criticism of, phylogenetic systematics, it seems odd that Nelson (1989: 277) views our efforts as being "potentially destructive to the independence of cladistics". On closer inspection, however, Nelson's reaction is understandable as a manifestation of fundamental differences between what he means by "cladistics" and what we mean by "phylogenetic systematics". Here we argue that (1) contrary to the impression given by Nelson, his version of cladistics is no more independent of a "model", as he terms it, than is phylogenetic systematics; (2) the tenet (model) underlying phylogenetic systematics has greater explanatory power than that underlying what Nelson calls "cladistics"; (3) while Nelson's version of cladistics may "not yet have found a comfortable home within one or another of the. .. metatheories of biology" (Nelson, 1989: 275), phylogenetic systematics is secure within the two general disciplines from which it derives its name; and (4) the perspective of phylogenetic systematics clarifies or provides deeper insight into several issues raised by Nelson, including the antagonism over paraphyletic taxa that developed between gradists and cladists, the primacy of common ancestry over characters, and the generality of the concept of monophyly and, consequently, of phylogenetic analysis.