Gondwanan Origin of Major Monocot Groups Inferred from Dispersal-Vicariance Analysis Kåre Bremer Uppsala University
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Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
VESSELS in ERIOCAULACEAE By
IAWA Journ al, Vol. 17 (2), 1996: 183-204 VESSELS IN ERIOCAULACEAE by Jennifer A. Thorsch & Vernon I. Cheadle I Department of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, CA 93 106, U.S.A. SUMMARY The occ urrence and level of specialization of vesse ls in 70 species representing 12 genera of Eriocaulaceae are presented. In alI species of Eriocaulaceae and in alI parts of the plant examined, vessels with simple perforations have been identified . Correlations between level of specia lization of vessel members and ecological conditi ons are reported for species from diverse habitats and species with distinct differences in habit. The pattern of origin and specialization of tracheary celIs in Erio caulaceae was compared to tracheary data for Xyridaceae , Rapateaceae, Restionaceae and Centrolepidaceae. The evolutionary position of these families has been regarded as close to Eriocaulaceae. Key words: Eriocaulaceae, vessels, perforation plates, phylogenetic posi tion. INTRODUCTION This paper provides detailed information about perforation plates of vessels in Erio caulaceae, the 29th family we have similarly examined in monocotyledons. The near ly complete list of families analyzed in detail is given in the literature cited in the paper on Commelinales (Cheadle & Kosakai 1980). Our studies on the tracheary elements in monocotyledons have included families and species from a broad range of habits, habitats and geographical sites around the world. Families for study were selected based on three criteria: I) presence of alI plant parts, 2) variety of habits and habitats, and 3) broad representation of the species within the family. The data on tracheids and vessels from these broadly based studies led to the folIowing brief conclusions. -
Appendix 1: Maps and Plans Appendix184 Map 1: Conservation Categories for the Nominated Property
Appendix 1: Maps and Plans Appendix184 Map 1: Conservation Categories for the Nominated Property. Los Alerces National Park, Argentina 185 Map 2: Andean-North Patagonian Biosphere Reserve: Context for the Nominated Proprty. Los Alerces National Park, Argentina 186 Map 3: Vegetation of the Valdivian Ecoregion 187 Map 4: Vegetation Communities in Los Alerces National Park 188 Map 5: Strict Nature and Wildlife Reserve 189 Map 6: Usage Zoning, Los Alerces National Park 190 Map 7: Human Settlements and Infrastructure 191 Appendix 2: Species Lists Ap9n192 Appendix 2.1 List of Plant Species Recorded at PNLA 193 Appendix 2.2: List of Animal Species: Mammals 212 Appendix 2.3: List of Animal Species: Birds 214 Appendix 2.4: List of Animal Species: Reptiles 219 Appendix 2.5: List of Animal Species: Amphibians 220 Appendix 2.6: List of Animal Species: Fish 221 Appendix 2.7: List of Animal Species and Threat Status 222 Appendix 3: Law No. 19,292 Append228 Appendix 4: PNLA Management Plan Approval and Contents Appendi242 Appendix 5: Participative Process for Writing the Nomination Form Appendi252 Synthesis 252 Management Plan UpdateWorkshop 253 Annex A: Interview Guide 256 Annex B: Meetings and Interviews Held 257 Annex C: Self-Administered Survey 261 Annex D: ExternalWorkshop Participants 262 Annex E: Promotional Leaflet 264 Annex F: Interview Results Summary 267 Annex G: Survey Results Summary 272 Annex H: Esquel Declaration of Interest 274 Annex I: Trevelin Declaration of Interest 276 Annex J: Chubut Tourism Secretariat Declaration of Interest 278 -
Complete Chloroplast Genomes Shed Light on Phylogenetic
www.nature.com/scientificreports OPEN Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae) Ju Namgung1,4, Hoang Dang Khoa Do1,2,4, Changkyun Kim1, Hyeok Jae Choi3 & Joo‑Hwan Kim1* Allioideae includes economically important bulb crops such as garlic, onion, leeks, and some ornamental plants in Amaryllidaceae. Here, we reported the complete chloroplast genome (cpDNA) sequences of 17 species of Allioideae, fve of Amaryllidoideae, and one of Agapanthoideae. These cpDNA sequences represent 80 protein‑coding, 30 tRNA, and four rRNA genes, and range from 151,808 to 159,998 bp in length. Loss and pseudogenization of multiple genes (i.e., rps2, infA, and rpl22) appear to have occurred multiple times during the evolution of Alloideae. Additionally, eight mutation hotspots, including rps15-ycf1, rps16-trnQ-UUG, petG-trnW-CCA , psbA upstream, rpl32- trnL-UAG , ycf1, rpl22, matK, and ndhF, were identifed in the studied Allium species. Additionally, we present the frst phylogenomic analysis among the four tribes of Allioideae based on 74 cpDNA coding regions of 21 species of Allioideae, fve species of Amaryllidoideae, one species of Agapanthoideae, and fve species representing selected members of Asparagales. Our molecular phylogenomic results strongly support the monophyly of Allioideae, which is sister to Amaryllioideae. Within Allioideae, Tulbaghieae was sister to Gilliesieae‑Leucocoryneae whereas Allieae was sister to the clade of Tulbaghieae‑ Gilliesieae‑Leucocoryneae. Molecular dating analyses revealed the crown age of Allioideae in the Eocene (40.1 mya) followed by diferentiation of Allieae in the early Miocene (21.3 mya). The split of Gilliesieae from Leucocoryneae was estimated at 16.5 mya. -
Plant Life of Western Australia
INTRODUCTION The characteristic features of the vegetation of Australia I. General Physiography At present the animals and plants of Australia are isolated from the rest of the world, except by way of the Torres Straits to New Guinea and southeast Asia. Even here adverse climatic conditions restrict or make it impossible for migration. Over a long period this isolation has meant that even what was common to the floras of the southern Asiatic Archipelago and Australia has become restricted to small areas. This resulted in an ever increasing divergence. As a consequence, Australia is a true island continent, with its own peculiar flora and fauna. As in southern Africa, Australia is largely an extensive plateau, although at a lower elevation. As in Africa too, the plateau increases gradually in height towards the east, culminating in a high ridge from which the land then drops steeply to a narrow coastal plain crossed by short rivers. On the west coast the plateau is only 00-00 m in height but there is usually an abrupt descent to the narrow coastal region. The plateau drops towards the center, and the major rivers flow into this depression. Fed from the high eastern margin of the plateau, these rivers run through low rainfall areas to the sea. While the tropical northern region is characterized by a wet summer and dry win- ter, the actual amount of rain is determined by additional factors. On the mountainous east coast the rainfall is high, while it diminishes with surprising rapidity towards the interior. Thus in New South Wales, the yearly rainfall at the edge of the plateau and the adjacent coast often reaches over 100 cm. -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M. -
GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
Generic Classification of Amaryllidaceae Tribe Hippeastreae Nicolás García,1 Alan W
TAXON 2019 García & al. • Genera of Hippeastreae SYSTEMATICS AND PHYLOGENY Generic classification of Amaryllidaceae tribe Hippeastreae Nicolás García,1 Alan W. Meerow,2 Silvia Arroyo-Leuenberger,3 Renata S. Oliveira,4 Julie H. Dutilh,4 Pamela S. Soltis5 & Walter S. Judd5 1 Herbario EIF & Laboratorio de Sistemática y Evolución de Plantas, Facultad de Ciencias Forestales y de la Conservación de la Naturaleza, Universidad de Chile, Av. Santa Rosa 11315, La Pintana, Santiago, Chile 2 USDA-ARS-SHRS, National Germplasm Repository, 13601 Old Cutler Rd., Miami, Florida 33158, U.S.A. 3 Instituto de Botánica Darwinion, Labardén 200, CC 22, B1642HYD, San Isidro, Buenos Aires, Argentina 4 Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Postal Code 6109, 13083-970 Campinas, SP, Brazil 5 Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611, U.S.A. Address for correspondence: Nicolás García, [email protected] DOI https://doi.org/10.1002/tax.12062 Abstract A robust generic classification for Amaryllidaceae has remained elusive mainly due to the lack of unequivocal diagnostic characters, a consequence of highly canalized variation and a deeply reticulated evolutionary history. A consensus classification is pro- posed here, based on recent molecular phylogenetic studies, morphological and cytogenetic variation, and accounting for secondary criteria of classification, such as nomenclatural stability. Using the latest sutribal classification of Hippeastreae (Hippeastrinae and Traubiinae) as a foundation, we propose the recognition of six genera, namely Eremolirion gen. nov., Hippeastrum, Phycella s.l., Rhodolirium s.str., Traubia, and Zephyranthes s.l. A subgeneric classification is suggested for Hippeastrum and Zephyranthes to denote putative subclades. -
Pollen Morphology of Rapateaceae Sherwin Carlquist Claremont Graduate School
Aliso: A Journal of Systematic and Evolutionary Botany Volume 5 | Issue 1 Article 7 1961 Pollen Morphology of Rapateaceae Sherwin Carlquist Claremont Graduate School Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Carlquist, Sherwin (1961) "Pollen Morphology of Rapateaceae," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 5: Iss. 1, Article 7. Available at: http://scholarship.claremont.edu/aliso/vol5/iss1/7 ALISO VoL. 5, No. 1, pp. 39-66 MAY 15, 1961 POLLEN MORPHOLOGY OF RAPATEACEAE SHERWIN CARLQUIST1 Claremont Graduate School, Claremont, California INTRODUCTION Several circumstances prompt the presentation of studies on pollen morphology of Rapa teaceae at this time. First, recent explorations in the Guayana Highland region of northern South America have amassed excellent collections in this interesting monocotyledonous family. The family is restricted to South America with the exception of a monotypic genus in western tropical Africa (Maguire et al., 1958). Although there is no reason to believe that all new species in the family have been described, the remarkable collections of material certainly do furnish an extensive basis for pollen study which has not been available previ ously. Of great significance in this regard are the collections of Maguire and his associates at the New York Botanical Garden. Many of these collections included liquid-preserved portions. A second reason for presentation of pollen studies is the excellent condition in which pollen-bearing material of many species was preserved. Because the delicate nature of pollen grains of Rapateaceae, as described below, makes preparation of pollen-grain slides from dried material often unsatisfactory, liquid-preserved material is especially im portant. -
Crown Pastoral-Tenure Review-Beaumont-Conservation
Crown Pastoral Land Tenure Review Lease name : BEAUMONT STATION Lease number : PO 362 Conservation Resources Report - Part 2 As part of the process of Tenure Review, advice on significant inherent values within the pastoral lease is provided by Department of Conservation officials in the form of a Conservation Resources Report. This report is the result of outdoor survey and inspection. It is a key piece of information for the development of a preliminary consultation document. Note: Plans which form part of the Conservation Resources Report are published separately. These documents are all released under the Official information Act 1982. December 10 RELEASED UNDER THE OFFICIAL INFORMATION ACT APPENDIX 5: Plant Species List – Beaumont Pastoral Lease Scientific name Plant type Family Abundance Localities Threat ranking Common at site name Abrotanella caespitosa DICOTYLEDONOUS HERBS Asteraceae Local Wetlands Not threatened Abrotanella inconspicua DICOTYLEDONOUS HERBS Asteraceae Local Ridgetops Not threatened Abrotanella patearoa DICOTYLEDONOUS HERBS Asteraceae Local Tops Naturally Uncommon Acaena anserinifolia DICOTYLEDONOUS HERBS Rosaceae Occasional Throughout Not threatened bidibid Acaena caesiiglauca DICOTYLEDONOUS HERBS Rosaceae Occasional Tussockland Not threatened bidibid Acaena inermis DICOTYLEDONOUS HERBS Rosaceae Rare Gravels Not threatened bidibid Acaena novae-zelandiae DICOTYLEDONOUS HERBS Rosaceae Rare Lower altitudes Not threatened bidibid Acaena tesca DICOTYLEDONOUS HERBS Rosaceae Rare Rock outcrops Naturally Uncommon bidibid -
Biogeography of the Monocotyledon Astelioid Clade (Asparagales): a History of Long-Distance Dispersal and Diversification with Emerging Habitats
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2021 Biogeography of the monocotyledon astelioid clade (Asparagales): A history of long-distance dispersal and diversification with emerging habitats Birch, Joanne L ; Kocyan, Alexander Abstract: The astelioid families (Asteliaceae, Blandfordiaceae, Boryaceae, Hypoxidaceae, and Lanari- aceae) have centers of diversity in Australasia and temperate Africa, with secondary centers of diversity in Afromontane Africa, Asia, and Pacific Islands. The global distribution of these families makes this an excellent lineage to test if current distribution patterns are the result of vicariance or long-distance dispersal and to evaluate the roles of tertiary climatic and geological drivers in lineage diversification. Sequence data were generated from five chloroplast regions (petL-psbE, rbcL, rps16-trnK, trnL-trnLF, trnS-trnSG) for 104 ingroup species sampled across global diversity. The astelioid phylogeny was inferred using maximum parsimony, maximum likelihood, and Bayesian inference methods. Divergence dates were estimated with a relaxed clock applied in BEAST. Ancestral ranges were reconstructed in ’BioGeoBEARS’ applying the corrected Akaike information criterion to test for the best-fit biogeographic model. Diver- sification rates were estimated in Bayesian Analysis of Macroevolutionary Mixtures [BAMM]. Astelioid relationships were inferred as Boryaceae(Blandfordiaceae(Asteliaceae(Hypoxidaceae plus Lanariaceae))). The crown astelioid node was dated to the Late Cretaceous (75.2 million years; 95% highest posterior densities interval 61.0-90.0 million years) with an inferred Eastern Gondwanan origin. However, aste- lioid speciation events have not been shaped by Gondwanan vicariance. Rather long-distance dispersal since the Eocene is inferred to account for current distributions. -
JABG22P101 Barker
JOURNAL of the ADELAIDE BOTANIC GARDENS AN OPEN ACCESS JOURNAL FOR AUSTRALIAN SYSTEMATIC BOTANY flora.sa.gov.au/jabg Published by the STATE HERBARIUM OF SOUTH AUSTRALIA on behalf of the BOARD OF THE BOTANIC GARDENS AND STATE HERBARIUM © Board of the Botanic Gardens and State Herbarium, Adelaide, South Australia © Department of Environment, Water and Natural Resources, Government of South Australia All rights reserved State Herbarium of South Australia PO Box 2732 Kent Town SA 5071 Australia © 2008 Board of the Botanic Gardens & State Herbarium, Government of South Australia J. Adelaide Bot. Gard. 22 (2008) 101 –104 © 2008 Department for Environment & Heritage, Government of South Australia NOTES & SH ORT COMMUNICATIONS New combinations in Pterostylis and Caladenia and other name changes in the Orchidaceae of South Australia R.M. Barker & R.J. Bates State Herbarium of South Australia, Plant Biodiversity Centre, P.O. Box 2732, Kent Town, South Australia 5071 E-mail: [email protected] Abstract Combinations are provided in Pterostylis and Caladenia (Orchidaceae) for new species initially described in the segregate genera Arachnorchis, Bunochilus and Oligochaetochilus. Recircumscription of existing species has led to some new species being recognised for South Australia and Prasophyllum sp. West Coast (R.Tate AD96945167) is now known as Prasophyllum catenemum D.L.Jones. Introduction within Pterostylis2 R.Br. will not be adopted. Both In the past, when there have been disagreements genera in the wider sense are recognised as monophyletic between botanists about the level at which species (Hopper & Brown 2004; Jones & Clements 2002b) should be recognised, the arguments have not impinged and for the practical purpose of running Australia’s particularly on the outside community.