Lianas As a Microhabitat for Myxomycetes in Tropical Forests
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Biodiversity of Plasmodial Slime Moulds (Myxogastria): Measurement and Interpretation
Protistology 1 (4), 161–178 (2000) Protistology August, 2000 Biodiversity of plasmodial slime moulds (Myxogastria): measurement and interpretation Yuri K. Novozhilova, Martin Schnittlerb, InnaV. Zemlianskaiac and Konstantin A. Fefelovd a V.L.Komarov Botanical Institute of the Russian Academy of Sciences, St. Petersburg, Russia, b Fairmont State College, Fairmont, West Virginia, U.S.A., c Volgograd Medical Academy, Department of Pharmacology and Botany, Volgograd, Russia, d Ural State University, Department of Botany, Yekaterinburg, Russia Summary For myxomycetes the understanding of their diversity and of their ecological function remains underdeveloped. Various problems in recording myxomycetes and analysis of their diversity are discussed by the examples taken from tundra, boreal, and arid areas of Russia and Kazakhstan. Recent advances in inventory of some regions of these areas are summarised. A rapid technique of moist chamber cultures can be used to obtain quantitative estimates of myxomycete species diversity and species abundance. Substrate sampling and species isolation by the moist chamber technique are indispensable for myxomycete inventory, measurement of species richness, and species abundance. General principles for the analysis of myxomycete diversity are discussed. Key words: slime moulds, Mycetozoa, Myxomycetes, biodiversity, ecology, distribu- tion, habitats Introduction decay (Madelin, 1984). The life cycle of myxomycetes includes two trophic stages: uninucleate myxoflagellates General patterns of community structure of terrestrial or amoebae, and a multi-nucleate plasmodium (Fig. 1). macro-organisms (plants, animals, and macrofungi) are The entire plasmodium turns almost all into fruit bodies, well known. Some mathematics methods are used for their called sporocarps (sporangia, aethalia, pseudoaethalia, or studying, from which the most popular are the quantita- plasmodiocarps). -
Slime Molds: Biology and Diversity
Glime, J. M. 2019. Slime Molds: Biology and Diversity. Chapt. 3-1. In: Glime, J. M. Bryophyte Ecology. Volume 2. Bryological 3-1-1 Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 18 July 2020 and available at <https://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 3-1 SLIME MOLDS: BIOLOGY AND DIVERSITY TABLE OF CONTENTS What are Slime Molds? ....................................................................................................................................... 3-1-2 Identification Difficulties ...................................................................................................................................... 3-1- Reproduction and Colonization ........................................................................................................................... 3-1-5 General Life Cycle ....................................................................................................................................... 3-1-6 Seasonal Changes ......................................................................................................................................... 3-1-7 Environmental Stimuli ............................................................................................................................... 3-1-13 Light .................................................................................................................................................... 3-1-13 pH and Volatile Substances -
Physarum Polycephalum) by SPME
Analysis of the volatiles in the headspace above the plasmodium and sporangia of the slime mould (Physarum polycephalum) by SPME- GCMS Huda al Kateb1 and Ben de Lacy Costello1 1Institute for biosensing technology, University of the West of England, Bristol, BS161QY, UK E-mail: [email protected] Abstract Solid phase micro-extraction (SPME) coupled with Gas Chromatography Mass Spectrometry (GC-MS) was used to extract and analyse the volatiles in the headspace above the plasmodial and sporulating stages of the slime mould Physarum Polycephalum. In total 115 compounds were identified from across a broad range of chemical classes. Although more (87) volatile organic compounds (VOCs) were identified when using a higher incubation temperature of 75oC, a large number of compounds (79) were still identified at the lower extraction temperature of 30oC and where the plasmodial stage was living. Far fewer compounds were extracted after sporulation at the two extraction temperatures. There were some marked differences between the VOCs identified in the plasmodial stage and after sporulation. In particular the nitrogen containing compounds acetonitrile, pyrrole, 2, 5-dimethyl-pyrazine and trimethyl pyrazine seemed to be associated with the sporulating stage. There were many compounds associated predominantly with the plasmodial stage including a number of furans and alkanes. Interestingly, a number of known fungal metabolites were identified including 1-octen-3- ol, 3-octanone, 1-octen-3-one, 3-octanol. In addition known metabolites of cyanobacteria and actinobacteria in particular geosmin was identified in the headspace. Volatile metabolites that had previously been identified as having a positive chemotactic response to the plasmodial stage of P. -
Physarum Polycephalum (Plasmodial Slime Mold)
Physarum polycephalum (plasmodial slime mold) Species: polycephalum Genus: Physarum Family: Physaraceae Order: Physarales Class: Myxomycetes Phylum: Mycetozoa Kingdom: Amoebozoa Conditions for Customer Ownership We hold permits allowing us to transport these organisms. To access permit conditions, click here. Never purchase living specimens without having a disposition strategy in place. There are currently no USDA permits required for this organism. In order to protect our environment, never release a live laboratory organism into the wild. Primary Hazard Considerations Always wash your hands thoroughly before and after you handle your cultures, or anything it has touched. It is recommended to use gloves when working with mold, fungus, or bacteria. Availability Physarum is available year round. Care Habitat • Plasmodial stage are shipped in a Petri dish on Physarum agar with oats. Your Physarum should be bright yellow in color, and fan shaped. If your Physarum takes on a different appearance it may be contaminated. Contaminated cultures occur when a foreign specimen (something other than Physarum) makes its way onto your culture. This culture should be stored at room temperature in a dark place. The culture should be viable for about 1–2 weeks in its current container. • Sclerotia are hardened masses of irregular form consisting of many minute cell-like components. These are shipped on cut strips of filter paper in a tube. The culture should be stored at room temperature and can be stored in this stage for several months. Care: • Physarum is subcultured onto Physarum agar, and is incubated at room temperature or 25 °C. To maintain viability, plasmodial Physarum should be subcultured weekly. -
Myxomycetes of Taiwan XXIV. the Genus Physarum
Taiwania, 58(3): 176‒188, 2013 DOI: 10.6165/tai.2013.58.176 RESEARCH ARTICLE Myxomycetes of Taiwan XXIV. The genus Physarum Chin-Hui Liu(1*), Jong-How Chang(1) and Fu-Ya Yeh(2) 1. Institute of Plant Science, National Taiwan University, Taipei, Taiwan 10617, R.O.C. 2. Department and Graduate School of Biotechnology, Fooyin University, Kaohsiung, Taiwan 83102, R.O.C. * Corresponding author. Email: [email protected] (Manuscript received 25 Febuary 2013; accepted 11 July 2013) ABSTRACT: Species of the genus Physarum collected from Taiwan were critically reviewed. In this paper, we also described and illustrated three new records of Taiwan: Physarum dictyosporum, P. nasuense, and P. tenerum, and a rediscovered species P. flavicomum. A key to the 51 Physarum species of Taiwan is also provided. KEY WORDS: Myxomycetes, Physaraceae, Physarum, Taiwan, taxonomy. INTRODUCTION 4’. Spores free, not in clusters ………………………………………. 5 5. Peridium double or triple …………………………………….…... 6 5’.Peridium single or appearing single ……………………………. 15 The genus Physarum, known as the largest genus in 6. Fructification strongly flattened, approximately isodiametric, Physaraceae and in Myxomycetes as well, comprises closely appressed and angular from pressure, and almost forming a pseudoaethalium; spores 12‒14 μm in diameter ...… P. tessellatum more than 141 species in the world records (Lado, 6’. Fructification not flattened, sporangiate or plasmodiocarpous, 2005–2013). As might be expected that members in this rarely forming a pseudoaethalium ……………………………….. 7 genus possess a wide range of characters as shown in 7. Fructification laterally compressed, usually dehiscing more or less the key to the species in this paper. They are, however, along a preformed longitudinal fissure ………………………..… 8 7’. -
Adaptive Behavior and Learning in Slime Moulds: the Role of Oscillations
Adaptive behavior and learning in slime moulds: the role of oscillations Aurèle Boussard, Adrian Fessel, Christina Oettmeier, Léa Briard, Hans-Gunther Dobereiner, Audrey Dussutour To cite this version: Aurèle Boussard, Adrian Fessel, Christina Oettmeier, Léa Briard, Hans-Gunther Dobereiner, et al.. Adaptive behavior and learning in slime moulds: the role of oscillations. Philosophical Transactions of the Royal Society of London. B (1887–1895), Royal Society, The, 2021. hal-02992905v1 HAL Id: hal-02992905 https://hal.archives-ouvertes.fr/hal-02992905v1 Submitted on 6 Nov 2020 (v1), last revised 25 Nov 2020 (v2) HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Submitted to Phil. Trans. R. Soc. B - Issue Adaptive behavior and learning in slime moulds: the role of oscillations Journal: Philosophical Transactions B Manuscript ID RSTB-2019-0757.R1 Article Type:ForReview Review Only Date Submitted by the n/a Author: Complete List of Authors: Boussard, Aurèle; CNRS, Research Center on Animal Cognition Fessel, Adrian; University of Bremen, Institut für Biophysik -
The Evolution of Ogres: Cannibalistic Growth in Giant Phagotrophs
bioRxiv preprint doi: https://doi.org/10.1101/262378; this version posted February 12, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bloomfield, 2018-02-08 – preprint copy - bioRχiv The evolution of ogres: cannibalistic growth in giant phagotrophs Gareth Bloomfell MRC Laboratory of Molecular Biology, Cambrilge, UK [email protected] twitter.com/iliomorph Abstract Eukaryotes span a very large size range, with macroscopic species most often formel in multicellular lifecycle stages, but sometimes as very large single cells containing many nuclei. The Mycetozoa are a group of amoebae that form macroscopic fruiting structures. However the structures formel by the two major mycetozoan groups are not homologous to each other. Here, it is proposel that the large size of mycetozoans frst arose after selection for cannibalistic feeling by zygotes. In one group, Myxogastria, these zygotes became omnivorous plasmolia; in Dictyostelia the evolution of aggregative multicellularity enablel zygotes to attract anl consume surrounling conspecifc cells. The cannibalism occurring in these protists strongly resembles the transfer of nutrients into metazoan oocytes. If oogamy evolvel early in holozoans, it is possible that aggregative multicellularity centrel on oocytes coull have precelel anl given rise to the clonal multicellularity of crown metazoa. Keyworls: Mycetozoa; amoebae; sex; cannibalism; oogamy Introduction – the evolution of Mycetozoa independently in several diverse lineages, presumably reflecting strong selection for effective dispersal [9]. The dictyostelids (social amoebae or cellular slime moulds) and myxogastrids (also known as myxomycetes and true or The close relationship between dictyostelia and myxogastria acellular slime moulds) are protists that form macroscopic suggests that they shared a common ancestor that formed fruiting bodies (Fig. -
Myxomycetes (Myxogastria) of Nampo Shoto (Bonin & Volcano Islands)
Bull. Natl. Mus. Nat. Sci., Ser. B, 43(3), pp. 63–68, August 22, 2017 Myxomycetes (Myxogastria) of Nampo Shoto (Bonin & Volcano Islands) (3) Tsuyoshi Hosoya1,*, Kentaro Hosaka1 and Yukinori Yamamoto2 1 Department of Botany, National Museum of Nature and Science, Amakubo 4–1–1, Tsukuba, Ibaraki 305–0005, Japan 2 1010–53 Ohtsu-ko, Kochi, Kochi 781–5102, Japan *E-mail: [email protected] (Received 18 April, 2017, accepted 28 June, 2017) Abstract In an exploration of Nampo Shoto (Southern Islands, consisting of the Ogasawara and Volcano islands) in June 2009, 22 myxomycete taxa were documented based on 44 specimens. Of these, Fuligo candida and Stemonitis pallida were newly documented. Key words : Kita-Iwojima Island, taxonomy. mately 200 km south of the Ogasawara Islands. Introduction Although Minami-Iwojima has been uninhabited To date, approximately 1000 taxa of myxomy- since recorded history, Kita-Iwojima was colo- cetes have been described worldwide, with some nized in 1899, but has been uninhabited since 400 taxa being recorded in Japan (Yamamoto, 1944 when the inhabitants were forced to evacu- 1998). The majority of the Japanese records are ate the island during the war. Because of their based on Japan’s main islands, whereas smaller geographical isolation and the relative lack of islands have not been well surveyed, with the human activity, the natural life on both islands exception some areas that have been surveyed has been receiving attention from researchers. with special attention (e.g., the islands of Yaku- However, because of severe geographical and shima and Iriomote). environmental conditions, approaching these Located in the mid-Pacific Ocean, the so- islands is generally extremely difficult. -
Slime Mould: the Fundamental Mechanisms of Biological Cognition
CORE Metadata, citation and similar papers at core.ac.uk Provided by UWE Bristol Research Repository Slime mould: the fundamental mechanisms of biological cognition Jordi Vallverd´ua, Oscar Castroa, Richard Maynec, Max Talanovb, Michael Levinf, Frantisek Baluˇskae, Yukio Gunjid, Audrey Dussutourg, Hector Zenilh, Andrew Adamatzkyc aDepartment of Philosophy, Universitat Aut`onomade Barcelona, Catalonia bKazan Federal University, Kazan, Russia cUnconventional Computing Centre, University of the West of England, Bristol, UK dWaseda University, Tokyo, Japan eInstitute of Cellular and Molecular Botany, University of Bonn, Germany fAllen Discovery Center, Tufts University, Medford, MA,USA gUniversite Paul Sabatier, Toulouse, France hAlgorithmic Dynamics Lab, SciLifeLab, Karolinska Institute, Stockholm, Sweden Abstract The slime mould Physarum polycephalum has been used in developing un- conventional computing devices for in which the slime mould played a role of a sensing, actuating, and computing device. These devices treated the slime mould rather as an active living substrate yet the slime mould is a self- consistent living creature which evolved for millions of years and occupied most part of the world, but in any case, that living entity did not own true cognition, just automated biochemical mechanisms. To \rehabilitate" the slime mould from the rank of a purely living electronics element to a \crea- ture of thoughts" we are analyzing the cognitive potential of P. polycephalum. We base our theory of minimal cognition of the slime mould on a bottom-up approach, from the biological and biophysical nature of the slime mould and its regulatory systems using frameworks suh as Lyons biogenic cognition, Muller, di Primio-Lengeler´smodifiable pathways, Bateson's \patterns that connect" framework, Maturanas autopoetic network, or proto-consciousness and Morgans Canon. -
Towards Slime Mould Chemical Sensor: Mapping Chemical Inputs Onto Electrical Potential Dynamics of Physarum Polycephalum
Towards slime mould chemical sensor: Mapping chemical inputs onto electrical potential dynamics of Physarum Polycephalum James G.H. Whiting1, Ben P.J. de Lacy Costello 1,2 Andrew Adamatzky1 1 Unconventional Computing Centre; University of the West of England; Bristol, UK, 2 Institute of Biosensing Technology; University of the West of England; Bristol, UK ABSTRACT Plasmodium of slime mould Physarum polycephalum is a large single celled organism visible unaided by the eye. This slime mould is capable of optimising the shape of its protoplasmic networks in spatial configurations of attractants and repellents. Such adaptive behaviour can be interpreted as computation. When exposed to attractants and repellents, Physarum changes patterns of its electrical activity. We experimentally derived a unique one-to-one mapping between a range of selected bioactive chemicals and patterns of oscillations of the slime mould’s extracellular electrical potential. This direct and rapid change demonstrates detection of these chemicals in a similar manner to a biological contactless chemical sensor. We believe results could be used in future designs of slime mould based chemical sensors and computers. Keywords: Physarum polycephalum, electrical activity, oscillations, biosensor. 1. Introduction Cell based biosensors have been developed for several decades, they differ from traditional sensors as they use a cell or cell constituent as the sensing elements or transducers [24], with a range of applications from toxicity studies to environmental chemical sensing, a large majority of the cells used in this application are bacterial, due to the ease of genetic manipulation and the range of substrates they can detect; Other cells for biosensors are yeast or fungi based, which offer distinct advantages over bacterial based sensors [25]. -
DNA Barcoding As a Tool for Identification of Plasmodia and Sclerotia of Myxomycetes (Myxogastria) Appearing in Moist Chamber Cultures
Mycosphere 8(10): 1904–1913 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/10/13 Copyright © Guizhou Academy of Agricultural Sciences DNA barcoding as a tool for identification of plasmodia and sclerotia of myxomycetes (Myxogastria) appearing in moist chamber cultures Shchepin ON1,2*, Dagamac NH2, Sanchez OM2, Novozhilov YK1, Schnittler M2, Zemlyanskaya IV3 1Komarov Botanical Institute of the Russian Academy of Sciences, Laboratory of Systematics and Geography of Fungi, Prof. Popov Street 2, 197376 St. Petersburg, Russia 2Institute of Botany and Landscape Ecology, Ernst Moritz Arndt University Greifswald, Soldmannstr. 15, D-17487 Greifswald, Germany 3Volgograd State Medical University, Pavshikh Bortsov Square 1, 400131 Volgograd, Russia Shchepin ON, Dagamac NH, Sanchez OM, Novozhilov YK, Schnittler M, Zemlyanskaya IV 2017 – DNA barcoding as a tool for identification of plasmodia and sclerotia of myxomycetes (Myxogastria) appearing in moist chamber cultures. Mycosphere 8(10), 1904–1913, Doi 10.5943/mycosphere/8/10/13 Abstract Moist chamber culture experiments are one of the basic methods of detection of myxomycete diversity that is usually employed to complement field datasets based on fruit bodies (sporocarps). However, often a large fraction of plasmodia that appear in moist chamber cultures does not yield sporocarps that can be determined to species based on morphological traits. Instead, plasmodia convert to a dormant stage called sclerotium. Both structures essentially lack taxonomically valuable morphological characters, preventing assignment to a species. Here we report the results of application of DNA barcoding as a method of taxonomical identification of plasmodia and sclerotia that develop in moist chamber cultures. The first ca. -
Myxomycete Diversity in Costa Rica
Mycosphere 9(2): 227–255 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/2/6 Copyright © Guizhou Academy of Agricultural Sciences Myxomycete diversity in Costa Rica Rojas C1,2*, Rojas PA1 and Lado C3 1 Engineering Research Institute (INII), University of Costa Rica, San Pedro de Montes de Oca, 11501-Costa Rica 2 Experimental Interdisciplinary Station of Agroecological Models (FEIMA), University of Costa Rica, Turrialba, 30502-Costa Rica 3 Real Jardín Botánico (CSIC), Plaza de Murillo 2, 28014 Madrid - Spain Rojas C, Lado C, Rojas PA 2018 – Myxomycete diversity in Costa Rica. Mycosphere 9(2), 227– 255, Doi 10.5943/mycosphere/9/2/6 Abstract An updated analysis of myxomycete diversity in Costa Rica is provided herein as a product of an extensive data mining-based study intended to normalize the information on myxomycetes from that country. Within the context of the Mesoamerican Biodiversity Hotspot, the 242 species of myxomycetes are reported herein demonstrated the potential of this area for diversity-based studies. For the construction of the updated species list, a thorough analysis that included examination of vouchers and a literature review has been carried out, and some species previously included in other works have been rejected due to inconsistencies or misidentification. The present contribution is essential to address the Wallacean shortfall within Mesoamerica and important for providing updated data on microorganisms in the context of regional biodiversity monitoring. Key words – Amoebozoa – biogeography – Central America – checklist – distribution – myxogastrids – Myxomycetes – plasmodial slime moulds Introduction The myxomycetes of Costa Rica have been the subject of recent small-scale analyses (e.g., Rojas & Doss, 2013, Rojas & Valverde 2015, Lado & Rojas, in rev.) and the last overall assessment of the diversity in this country, based on morphospecies, reported 208 species for the entire territory (Rojas et al.