Malagasy bats shelter a considerable genetic diversity of pathogenic Leptospira suggesting notable host-specificity patterns. Yann Gomard1,2, Muriel Dietrich1,3, Nicolas Wieseke4, Beza Ramasindrazana1,2,5, Erwan Lagadec1,2, Steven M. Goodman5,6, Koussay Dellagi1,2,7, and Pablo Tortosa1,2,* 1 Centre de Recherche et de Veille sur les maladies émergentes dans l’Océan Indien (CRVOI), 97490 Sainte Clotilde, La 2 Réunion, France, Université de La Réunion, UMR PIMIT "Processus Infectieux en Milieu Insulaire Tropical", INSERM U 1187, CNRS 9192, IRD 249. Plateforme de Recherche CYROI, 97490 Sainte Clotilde, Saint-Denis, La Réunion, France, 3 Department of Microbiology and Plant Pathology, Faculty of Natural and Agricultural Sciences, University of Pretoria, 4 Pretoria 0002, South Africa, Parallel Computing and Complex Systems Group, Faculty of Mathematics and Computer 5 Science, University of Leipzig, Augustusplatz 10, D-04109 Leipzig, Germany, Association Vahatra, BP 3972, Antananarivo 6 101, Madagascar, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605-2496, United States of America, 7Institut de Recherche pour le Développement (IRD), 97490 Sainte Clotilde, La Réunion, France. *Corresponding author: CRVOI, UMR PIMIT, Université de La Réunion, INSERM 1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, 2 rue Maxime Rivière, 97490 Ste Clotilde, La Réunion, France. Tel: +262 262 938 820 Fax: +262 262 938 801. E-mail:
[email protected] Running title: Leptospira host-specificity in Malagasy Chiroptera One sentence summary: This study highlights the high genetic diversity of Leptospira in Madagascar bats and demonstrates that this genetic diversity is structured by a notable host-specifity pattern.