Neosaurus Cynodus, and Related Material, from the Permo-Carboniferous of France
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Distributions of Extinction Times from Fossil Ages and Tree Topologies: the Example of Some Mid-Permian Synapsid Extinctions Gilles Didier, Michel Laurin
Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier, Michel Laurin To cite this version: Gilles Didier, Michel Laurin. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions. 2021. hal-03258099v2 HAL Id: hal-03258099 https://hal.archives-ouvertes.fr/hal-03258099v2 Preprint submitted on 20 Sep 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier1 and Michel Laurin2 1 IMAG, Univ Montpellier, CNRS, Montpellier, France 2 CR2P (\Centre de Pal´eontologie { Paris"; UMR 7207), CNRS/MNHN/SU, Mus´eumNational d'Histoire Naturelle, Paris, France September 16, 2021 Abstract Given a phylogenetic tree that includes only extinct, or a mix of extinct and extant taxa, where at least some fossil data are available, we present a method to compute the distribution of the extinction time of a given set of taxa under the Fossilized-Birth-Death model. Our approach differs from the previous ones in that it takes into account (i) the possibility that the taxa or the clade considered may diversify before going extinct and (ii) the whole phylogenetic tree to estimate extinction times, whilst previous methods do not consider the diversification process and deal with each branch independently. -
Reptile Family Tree
Reptile Family Tree - Peters 2015 Distribution of Scales, Scutes, Hair and Feathers Fish scales 100 Ichthyostega Eldeceeon 1990.7.1 Pederpes 91 Eldeceeon holotype Gephyrostegus watsoni Eryops 67 Solenodonsaurus 87 Proterogyrinus 85 100 Chroniosaurus Eoherpeton 94 72 Chroniosaurus PIN3585/124 98 Seymouria Chroniosuchus Kotlassia 58 94 Westlothiana Casineria Utegenia 84 Brouffia 95 78 Amphibamus 71 93 77 Coelostegus Cacops Paleothyris Adelospondylus 91 78 82 99 Hylonomus 100 Brachydectes Protorothyris MCZ1532 Eocaecilia 95 91 Protorothyris CM 8617 77 95 Doleserpeton 98 Gerobatrachus Protorothyris MCZ 2149 Rana 86 52 Microbrachis 92 Elliotsmithia Pantylus 93 Apsisaurus 83 92 Anthracodromeus 84 85 Aerosaurus 95 85 Utaherpeton 82 Varanodon 95 Tuditanus 91 98 61 90 Eoserpeton Varanops Diplocaulus Varanosaurus FMNH PR 1760 88 100 Sauropleura Varanosaurus BSPHM 1901 XV20 78 Ptyonius 98 89 Archaeothyris Scincosaurus 77 84 Ophiacodon 95 Micraroter 79 98 Batropetes Rhynchonkos Cutleria 59 Nikkasaurus 95 54 Biarmosuchus Silvanerpeton 72 Titanophoneus Gephyrostegeus bohemicus 96 Procynosuchus 68 100 Megazostrodon Mammal 88 Homo sapiens 100 66 Stenocybus hair 91 94 IVPP V18117 69 Galechirus 69 97 62 Suminia Niaftasuchus 65 Microurania 98 Urumqia 91 Bruktererpeton 65 IVPP V 18120 85 Venjukovia 98 100 Thuringothyris MNG 7729 Thuringothyris MNG 10183 100 Eodicynodon Dicynodon 91 Cephalerpeton 54 Reiszorhinus Haptodus 62 Concordia KUVP 8702a 95 59 Ianthasaurus 87 87 Concordia KUVP 96/95 85 Edaphosaurus Romeria primus 87 Glaucosaurus Romeria texana Secodontosaurus -
Origin and Beyond
EVOLUTION ORIGIN ANDBEYOND Gould, who alerted him to the fact the Galapagos finches ORIGIN AND BEYOND were distinct but closely related species. Darwin investigated ALFRED RUSSEL WALLACE (1823–1913) the breeding and artificial selection of domesticated animals, and learned about species, time, and the fossil record from despite the inspiration and wealth of data he had gathered during his years aboard the Alfred Russel Wallace was a school teacher and naturalist who gave up teaching the anatomist Richard Owen, who had worked on many of to earn his living as a professional collector of exotic plants and animals from beagle, darwin took many years to formulate his theory and ready it for publication – Darwin’s vertebrate specimens and, in 1842, had “invented” the tropics. He collected extensively in South America, and from 1854 in the so long, in fact, that he was almost beaten to publication. nevertheless, when it dinosaurs as a separate category of reptiles. islands of the Malay archipelago. From these experiences, Wallace realized By 1842, Darwin’s evolutionary ideas were sufficiently emerged, darwin’s work had a profound effect. that species exist in variant advanced for him to produce a 35-page sketch and, by forms and that changes in 1844, a 250-page synthesis, a copy of which he sent in 1847 the environment could lead During a long life, Charles After his five-year round the world voyage, Darwin arrived Darwin saw himself largely as a geologist, and published to the botanist, Joseph Dalton Hooker. This trusted friend to the loss of any ill-adapted Darwin wrote numerous back at the family home in Shrewsbury on 5 October 1836. -
Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha)
Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha) by Richard Kissel A thesis submitted in conformity with the requirements for the degree of doctor of philosophy Graduate Department of Ecology & Evolutionary Biology University of Toronto © Copyright by Richard Kissel 2010 Morphology, Phylogeny, and Evolution of Diadectidae (Cotylosauria: Diadectomorpha) Richard Kissel Doctor of Philosophy Graduate Department of Ecology & Evolutionary Biology University of Toronto 2010 Abstract Based on dental, cranial, and postcranial anatomy, members of the Permo-Carboniferous clade Diadectidae are generally regarded as the earliest tetrapods capable of processing high-fiber plant material; presented here is a review of diadectid morphology, phylogeny, taxonomy, and paleozoogeography. Phylogenetic analyses support the monophyly of Diadectidae within Diadectomorpha, the sister-group to Amniota, with Limnoscelis as the sister-taxon to Tseajaia + Diadectidae. Analysis of diadectid interrelationships of all known taxa for which adequate specimens and information are known—the first of its kind conducted—positions Ambedus pusillus as the sister-taxon to all other forms, with Diadectes sanmiguelensis, Orobates pabsti, Desmatodon hesperis, Diadectes absitus, and (Diadectes sideropelicus + Diadectes tenuitectes + Diasparactus zenos) representing progressively more derived taxa in a series of nested clades. In light of these results, it is recommended herein that the species Diadectes sanmiguelensis be referred to the new genus -
Distributions of Extinction Times from Fossil Ages and Tree Topologies: the Example of Some Mid-Permian Synapsid Extinctions
bioRxiv preprint doi: https://doi.org/10.1101/2021.06.11.448028; this version posted June 11, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Distributions of extinction times from fossil ages and tree topologies: the example of some mid-Permian synapsid extinctions Gilles Didier1 and Michel Laurin2 1IMAG, Univ Montpellier, CNRS, Montpellier, France 2CR2P (“Centre de Recherches sur la Paléobiodiversité et les Paléoenvironnements”; UMR 7207), CNRS/MNHN/UPMC, Sorbonne Université, Muséum National d’Histoire Naturelle, Paris, France June 11, 2021 Abstract Given a phylogenetic tree of extinct and extant taxa with fossils where the only temporal infor- mation stands in the fossil ages, we devise a method to compute the distribution of the extinction time of a given set of taxa under the Fossilized-Birth-Death model. Our approach differs from the previous ones in that it takes into account the possibility that the taxa or the clade considered may diversify before going extinct, whilst previous methods just rely on the fossil recovery rate to estimate confidence intervals. We assess and compare our new approach with a standard previous one using simulated data. Results show that our method provides more accurate confidence intervals. This new approach is applied to the study of the extinction time of three Permo-Carboniferous synapsid taxa (Ophiacodontidae, Edaphosauridae, and Sphenacodontidae) that are thought to have disappeared toward the end of the Cisuralian, or possibly shortly thereafter. The timing of extinctions of these three taxa and of their component lineages supports the idea that a biological crisis occurred in the late Kungurian/early Roadian. -
Early Tetrapod Relationships Revisited
Biol. Rev. (2003), 78, pp. 251–345. f Cambridge Philosophical Society 251 DOI: 10.1017/S1464793102006103 Printed in the United Kingdom Early tetrapod relationships revisited MARCELLO RUTA1*, MICHAEL I. COATES1 and DONALD L. J. QUICKE2 1 The Department of Organismal Biology and Anatomy, The University of Chicago, 1027 East 57th Street, Chicago, IL 60637-1508, USA ([email protected]; [email protected]) 2 Department of Biology, Imperial College at Silwood Park, Ascot, Berkshire SL57PY, UK and Department of Entomology, The Natural History Museum, Cromwell Road, London SW75BD, UK ([email protected]) (Received 29 November 2001; revised 28 August 2002; accepted 2 September 2002) ABSTRACT In an attempt to investigate differences between the most widely discussed hypotheses of early tetrapod relation- ships, we assembled a new data matrix including 90 taxa coded for 319 cranial and postcranial characters. We have incorporated, where possible, original observations of numerous taxa spread throughout the major tetrapod clades. A stem-based (total-group) definition of Tetrapoda is preferred over apomorphy- and node-based (crown-group) definitions. This definition is operational, since it is based on a formal character analysis. A PAUP* search using a recently implemented version of the parsimony ratchet method yields 64 shortest trees. Differ- ences between these trees concern: (1) the internal relationships of aı¨stopods, the three selected species of which form a trichotomy; (2) the internal relationships of embolomeres, with Archeria -
Morphology and Evolutionary Significance of the Atlas−Axis Complex in Varanopid Synapsids
Morphology and evolutionary significance of the atlas−axis complex in varanopid synapsids NICOLÁS E. CAMPIONE and ROBERT R. REISZ Campione, N.E. and Reisz, R.R. 2011. Morphology and evolutionary significance of the atlas−axis complex in varanopid synapsids. Acta Palaeontologica Polonica 56 (4): 739–748. The atlas−axis complex has been described in few Palaeozoic taxa, with little effort being placed on examining variation of this structure within a small clade. Most varanopids, members of a clade of gracile synapsid predators, have well pre− served atlas−axes permitting detailed descriptions and examination of morphological variation. This study indicates that the size of the transverse processes on the axis and the shape of the axial neural spine vary among members of this clade. In particular, the small mycterosaurine varanopids possess small transverse processes that point posteroventrally, and the axial spine is dorsoventrally short, with a flattened dorsal margin in lateral view. The larger varanodontine varanopids have large transverse processes with a broad base, and a much taller axial spine with a rounded dorsal margin in lateral view. Based on outgroup comparisons, the morphology exhibited by the transverse processes is interpreted as derived in varanodontines, whereas the morphology of the axial spine is derived in mycterosaurines. The axial spine anatomy of Middle Permian South African varanopids is reviewed and our interpretation is consistent with the hypothesis that at least two varanopid taxa are present in South Africa, a region overwhelmingly dominated by therapsid synapsids and parareptiles. Key words: Synapsida, Varanopidae, Mycterosaurinae, Varanodontinae, atlas−axis complex, axial skeleton, Middle Permian, South Africa. -
Origin and Phylogenetic Relationships of Living Amphibians
Points of View Syst. Biol. 51(2):364–369, 2002 Tetrapod Phylogeny, Amphibian Origins, and the Denition of the Name Tetrapoda MICHEL LAURIN Equip´ e “Formations squelettiques” UMR CNRS 8570, Case 7077, Universite´ Paris 7, 75005 Paris, France; E-mail: [email protected] The most detailed, computer-generated Ahlberg and Milner, 1994) or did not include phylogeny of early amphibians has been amphibians (Gauthier et al., 1988), thus published recently (Anderson, 2001). The precluding identication of the dichotomy study was based on an analysis of 182 os- between amphibians and reptiliomorphs teological characters and 49 taxa, including (the clade that includes amniotes and the 41 “lepospondyls,” 7 other Paleozoic taxa extinct taxa that are more closely related representing other major groups (seymouri- to amniotes than to lissamphibians). The amorphs, embolomeres, temnospondyls, latest phylogeny (Anderson, 2001) suggests Downloaded By: [University of Tennessee] At: 00:39 18 January 2008 etc.), and a single lissamphibian (the oldest that despite initial skepticism (Coates et al., known apodan, the Jurassic taxon Eocae- 2000), the new pattern of stegocephalian cilia). The publication of this phylogeny is relationships appears to be well supported welcome, but several points raised in that and relatively stable, at least as it pertains to paper deserve to be discussed further. Espe- the relationships between major taxa such cially problematic are the views Anderson as Temnospondyli, Embolomeri, Seymouri- expressed about the polyphyletic origin of amorpha, Amniota, and the paraphyletic extant amphibians and about the application group informally called lepospondyls of phylogenetic nomenclature. (Figs. 1a, 1b). TETRAPOD PHYLOGENY Anderson (2001) found that the lep- Origin of Extant Amphibians ospondyls are more closely related to This brings us to the more difcult ques- amniotes than to seymouriamorphs and em- tion of amphibian origins. -
Curriculum Vitae
CURRICULUM VITAE AMY C. HENRICI Collection Manager Section of Vertebrate Paleontology Carnegie Museum of Natural History 4400 Forbes Avenue Pittsburgh, Pennsylvania 15213-4080, USA Phone:(412)622-1915 Email: [email protected] BACKGROUND Birthdate: 24 September 1957. Birthplace: Pittsburgh. Citizenship: USA. EDUCATION B.A. 1979, Hiram College, Ohio (Biology) M.S. 1989, University of Pittsburgh, Pennsylvania (Geology) CAREER Carnegie Museum of Natural History (CMNH) Laboratory Technician, Section of Vertebrate Paleontology, 1979 Research Assistant, Section of Vertebrate Paleontology, 1980 Curatorial Assistant, Section of Vertebrate Paleontology, 1980-1984 Scientific Preparator, Section of Paleobotany, 1985-1986 Scientific Preparator, Section of Vertebrate Paleontology, 1985-2002 Acting Collection Manager/Scientific Preparator, 2003-2004 Collection Manager, 2005-present PALEONTOLOGICAL FIELD EXPERIENCE Late Pennsylvanian through Early Permian of Colorado, New Mexico and Utah (fish, amphibians and reptiles) Early Permian of Germany, Bromacker quarry (amphibians and reptiles) Triassic of New Mexico, Coelophysis quarry (Coelophysis and other reptiles) Upper Jurassic of Colorado (mammals and herps) Tertiary of Montana, Nevada, and Wyoming (mammals and herps) Pleistocene of West Virginia (mammals and herps) Lake sediment cores and lake sediment surface samples, Wyoming (pollen and seeds) PROFESSIONAL APPOINTMENTS Associate Editor, Society of Vertebrate Paleontology, 1998-2000. Research Associate in the Science Division, New Mexico Museum of Natural History and Science, 2007-present. PROFESSIONAL ASSOCIATIONS Society of Vertebrate Paleontology Paleontological Society LECTURES and TUTORIALS (Invited and public) 1994. Middle Eocene frogs from central Wyoming: ontogeny and taphonomy. California State University, San Bernardino 1994. Mechanical preparation of vertebrate fossils. California State University, San Bernardino 1994. Mechanical preparation of vertebrate fossils. University of Chicago 2001. -
Frequently Asked Questions Reverse-Engineering the Locomotion of a Stem Amniote John A
Frequently Asked Questions Reverse-engineering the locomotion of a stem amniote John A. Nyakatura, Kamilo Melo, Tomislav Horvat, Kostas Karakasiliotis, Vivian R. Allen, Amir Andikfar, Emanuel Andrada, Patrick Arnold, Jonas Lauströer, John R. Hutchinson, Martin S. Fischer and Auke J. Ijspeert. Nature 565, 351–355; 2019. Why was a robot useful for this study? 2 Why is Orobates important? 2 Why do you use the term reverse engineering? 2 Who Funded the project? 2 Where was Orobates found? 2 Where could this method or research be taken in the future? 2 What were some of the considerations that came into play as you reconstructed the way this animal walked? 3 What was the most surprising finding in this work? 3 What made Orobates such a good candidate for this kind of analysis? 3 What is new compared to other projects involving simulations or robots? 3 What is a stem amniote? 3 What does the term ‘stem’ mean? 3 What does the term “advanced locomotion” in the context of the study mean? 4 What do the terms amniote and anamniote mean? 4 What did you learn that you didn't know before? 4 What are the dimensions of the OroBot? 4 Were you surprised at the result that Orobates had a more "advanced" locomotion? 4 How was it possible to link the fossil trackways to the body fossil of Orobates? 4 How useful is this work to other fields? 4 How long did the project take and who was involved? 5 How expensive is the robot? 5 How did you validate your simulations? 5 Have there been similar robotic or simulation studies of fossils before? Can you give some examples? 5 Is Orobates older than dinosaurs? 6 Can the robot swim? 6 Can OroBOT be used to study other extinct animals as well? 6 1 Why was a robot useful for this study? Our robotic model allowed us to test our hypotheses about the animal’s locomotion dynamics, otherwise elusive to explore in an extinct animal. -
Physical and Environmental Drivers of Paleozoic Tetrapod Dispersal Across Pangaea
ARTICLE https://doi.org/10.1038/s41467-018-07623-x OPEN Physical and environmental drivers of Paleozoic tetrapod dispersal across Pangaea Neil Brocklehurst1,2, Emma M. Dunne3, Daniel D. Cashmore3 &Jӧrg Frӧbisch2,4 The Carboniferous and Permian were crucial intervals in the establishment of terrestrial ecosystems, which occurred alongside substantial environmental and climate changes throughout the globe, as well as the final assembly of the supercontinent of Pangaea. The fl 1234567890():,; in uence of these changes on tetrapod biogeography is highly contentious, with some authors suggesting a cosmopolitan fauna resulting from a lack of barriers, and some iden- tifying provincialism. Here we carry out a detailed historical biogeographic analysis of late Paleozoic tetrapods to study the patterns of dispersal and vicariance. A likelihood-based approach to infer ancestral areas is combined with stochastic mapping to assess rates of vicariance and dispersal. Both the late Carboniferous and the end-Guadalupian are char- acterised by a decrease in dispersal and a vicariance peak in amniotes and amphibians. The first of these shifts is attributed to orogenic activity, the second to increasing climate heterogeneity. 1 Department of Earth Sciences, University of Oxford, South Parks Road, Oxford OX1 3AN, UK. 2 Museum für Naturkunde, Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Invalidenstraße 43, 10115 Berlin, Germany. 3 School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham B15 2TT, UK. 4 Institut -
Cranial Anatomy of Ennatosaurus Tecton (Synapsida: Caseidae) from the Middle Permian of Russia and the Evolutionary Relationships of Caseidae
Journal of Vertebrate Paleontology 28(1):160–180, March 2008 © 2008 by the Society of Vertebrate Paleontology ARTICLE CRANIAL ANATOMY OF ENNATOSAURUS TECTON (SYNAPSIDA: CASEIDAE) FROM THE MIDDLE PERMIAN OF RUSSIA AND THE EVOLUTIONARY RELATIONSHIPS OF CASEIDAE HILLARY C. MADDIN,*,1 CHRISTIAN A. SIDOR,2 and ROBERT R. REISZ1 1University of Toronto at Mississauga, 3359 Mississauga Rd, Mississauga, Ontario, L5L 1C6, Canada; 2Department of Biology and Burke Museum, University of Washington, Seattle, Washington, 98195, U.S.A. ABSTRACT—Detailed description of the Middle Permian Russian caseid Ennatosaurus tecton shows that three aut- apomorphies distinguish it from other caseids: a broad anterior ramus of the jugal, a large contribution of the frontal to the dorsal orbital margin, and a relatively narrow parasphenoid body. Phylogenetic analysis of Caseidae yields a single most parsimonious tree and its topology posits Ennatosaurus tecton as the sister taxon to the clade of the North American caseids Angelosaurus dolani and Cotylorhynchus romeri. Phylogenetic analysis supports the position of Oromycter dole- sorum from the Lower Permian Richards Spur locality as the most basal member of Caseidae. In addition, the genus Casea is resolved as paraphyletic, whereby C. rutena forms the sister taxon to the clade containing E. tecton, C. romeri, and A. dolani. The current topology reveals that the pattern of dental complexity in terms of the number of apical cuspules is homoplasious, cautioning against its use as a unidirectional phylogenetic character. INTRODUCTION Phreatophrasma aenigmaticum is known only from a single iso- lated femur, which possesses both caseid and edaphosaurid fea- Caseidae are a monophyletic clade of basal synapsids charac- tures (Olson, 1962; 1968).