Differential Physiological Responses of Small Thalassiosira Pseudonana and Large Thalassiosira Punctigera to the Shifted-High Light and Nitrogen
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Periodic and Coordinated Gene Expression Between a Diazotroph and Its Diatom Host
The ISME Journal (2019) 13:118–131 https://doi.org/10.1038/s41396-018-0262-2 ARTICLE Periodic and coordinated gene expression between a diazotroph and its diatom host 1 1,2 1 3 4 Matthew J. Harke ● Kyle R. Frischkorn ● Sheean T. Haley ● Frank O. Aylward ● Jonathan P. Zehr ● Sonya T. Dyhrman1,2 Received: 11 April 2018 / Revised: 28 June 2018 / Accepted: 28 July 2018 / Published online: 16 August 2018 © International Society for Microbial Ecology 2018 Abstract In the surface ocean, light fuels photosynthetic carbon fixation of phytoplankton, playing a critical role in ecosystem processes including carbon export to the deep sea. In oligotrophic oceans, diatom–diazotroph associations (DDAs) play a keystone role in ecosystem function because diazotrophs can provide otherwise scarce biologically available nitrogen to the diatom host, fueling growth and subsequent carbon sequestration. Despite their importance, relatively little is known about the nature of these associations in situ. Here we used metatranscriptomic sequencing of surface samples from the North Pacific Subtropical Gyre (NPSG) to reconstruct patterns of gene expression for the diazotrophic symbiont Richelia and we – 1234567890();,: 1234567890();,: examined how these patterns were integrated with those of the diatom host over day night transitions. Richelia exhibited significant diel signals for genes related to photosynthesis, N2 fixation, and resource acquisition, among other processes. N2 fixation genes were significantly co-expressed with host nitrogen uptake and metabolism, as well as potential genes involved in carbon transport, which may underpin the exchange of nitrogen and carbon within this association. Patterns of expression suggested cell division was integrated between the host and symbiont across the diel cycle. -
Control of Phytoplankton Growth in Nutrient Recycling Ecosystems
MARINE ECOLOGY PROGRESS SERIES Published May 29 Mar. Ecol. Prog. Ser. Control of phytoplankton growth in nutrient recycling ecosystems. Theory and terminology T. Frede ~hingstadl,Egil sakshaug2 ' Department of Microbiology and Plant Physiology, University of Bergen, Jahnebk. 5,N-5007 Bergen, Norway Trondhjem Biological Station, The Museum. University of Trondheim, Bynesvn. 46, N-7018 Trondheim, Norway ABSTRACT: Some of the principles governing phytoplankton growth, biomass, and species composi- tion in 2-layered pelagic ecosystems are explored using an idealized, steady-state, mathematical model, based on simple extensions of Lotka-Volterra type equations. In particular, the properties of a food web based on 'small' and 'large' phytoplankton are investigated. Features of the phytoplankton community that may be derived from this conceptually simple model include CO-existenceof more than one species on one limiting nutrient, a rapid growth rate for a large fraction of the phytoplankton community in oligotrophic waters, a long food chain starting from a population of small phytoplankton in waters with moderate mixing over the nutricline, and a transition to dominance of a food chain based on large phytoplankton when mixing is increased. As pointed out by other authors, careless use of the concept of one limiting factor may be potentially confusing in such systems. To avoid this, a distinction in terminology between 'controlling' and 'limiting' factors is suggested. INTRODUCTION dominance of short food chains in upwelling areas (Ryther 1969). Various aspects of nutrient cycling in pelagic ecosys- Many authors have addressed various aspects of the tems are of prime importance to our understanding of planktonic ecosystem using mathematical models how productivity of the oceans is controlled, and to our which are idealized and conceptual. -
Measurements of Plankton Distribution in the Ocean Using
Measurements of Plankton Distribution in the Ocean Using Submersible Holography Edwin Malkiel, Omar Alquaddoomi and Joseph Katz Department of Mechanical Engineering, The Johns Hopkins University Baltimore, MD 21218 USA Abstract A submersible holography system for in situ recordings of the spatial distribution of plankton has been developed and deployed. The system utilizes a ruby laser with an in-line recording configuration and has a sample volume of 732 ml. The reconstructed images have a resolution ranging from 10 - 20 µm for spherical particles and 3 µm for linear particles that lie within 100 mm from the film. Reconstructed volumes from holograms recorded during two recent deployments in the Strait of Georgia are scanned to obtain focused images of the particles, their position, size, orientation. The particles are also classified to several groups based on their morphological characteristics. One of the sets includes holograms recorded during a 15 minute vertical transect of the top 30 m of the water column. Along with the holograms, the data includes records of depth, temperature, salinity, dissolved oxygen and optical transmissivity. The results show substantial variations in population makeup between layers spaced a short distance apart, particle concentration maxima at and near a pycnocline and evidence of zooplankton migration. A predominant horizontal diatom orientation is indicated in the region of peak diatom concentration. Individual holograms show clustering within different classes of plankton. Keywords: holography, plankton distribution, thin layer, copepod 1.0 Introduction As demand on the world's fisheries increase, there is considerable concern over the sustainability of such resources. There is also concern over the increasing frequency of harmful algal blooms in coastal waters, not only because of their effect on the fisheries, but also because their effect on people. -
Marine Plankton Diatoms of the West Coast of North America
MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. CUPP UNIVERSITY OF CALIFORNIA PRESS BERKELEY AND LOS ANGELES 1943 BULLETIN OF THE SCRIPPS INSTITUTION OF OCEANOGRAPHY OF THE UNIVERSITY OF CALIFORNIA LA JOLLA, CALIFORNIA EDITORS: H. U. SVERDRUP, R. H. FLEMING, L. H. MILLER, C. E. ZoBELL Volume 5, No.1, pp. 1-238, plates 1-5, 168 text figures Submitted by editors December 26,1940 Issued March 13, 1943 Price, $2.50 UNIVERSITY OF CALIFORNIA PRESS BERKELEY, CALIFORNIA _____________ CAMBRIDGE UNIVERSITY PRESS LONDON, ENGLAND [CONTRIBUTION FROM THE SCRIPPS INSTITUTION OF OCEANOGRAPHY, NEW SERIES, No. 190] PRINTED IN THE UNITED STATES OF AMERICA Taxonomy and taxonomic names change over time. The names and taxonomic scheme used in this work have not been updated from the original date of publication. The published literature on marine diatoms should be consulted to ensure the use of current and correct taxonomic names of diatoms. CONTENTS PAGE Introduction 1 General Discussion 2 Characteristics of Diatoms and Their Relationship to Other Classes of Algae 2 Structure of Diatoms 3 Frustule 3 Protoplast 13 Biology of Diatoms 16 Reproduction 16 Colony Formation and the Secretion of Mucus 20 Movement of Diatoms 20 Adaptations for Flotation 22 Occurrence and Distribution of Diatoms in the Ocean 22 Associations of Diatoms with Other Organisms 24 Physiology of Diatoms 26 Nutrition 26 Environmental Factors Limiting Phytoplankton Production and Populations 27 Importance of Diatoms as a Source of food in the Sea 29 Collection and Preparation of Diatoms for Examination 29 Preparation for Examination 30 Methods of Illustration 33 Classification 33 Key 34 Centricae 39 Pennatae 172 Literature Cited 209 Plates 223 Index to Genera and Species 235 MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. -
Dynamics of Late Spring and Summer Phytoplankton Communities on Georges Bank, with Emphasis on Diatoms, Alexandrium Spp., and Other Dinoflagellates
Deep-Sea Research II 103 (2014) 120–138 Contents lists available at ScienceDirect Deep-Sea Research II journal homepage: www.elsevier.com/locate/dsr2 Dynamics of late spring and summer phytoplankton communities on Georges Bank, with emphasis on diatoms, Alexandrium spp., and other dinoflagellates Rachel M. Gettings, David W. Townsend n, Maura A. Thomas, Lee Karp-Boss School of Marine Sciences, University of Maine, Orono, ME, USA article info abstract Available online 18 May 2013 We analyzed the distribution, abundance, and succession patterns of major phytoplankton taxa on Keywords: Georges Bank in relation to hydrography, nutrients, and size-fractionated chlorophyll concentrations 4 μ o μ – Georges Bank ( 20 m; 20 m) on three oceanographic cruises from late spring through summer 2008 (28 April 5 Alexandrium May, 27 May–4 June, and 27 June–3 July). The April–May phytoplankton community was dominated Dinoflagellates numerically by the diatoms Skeletonema spp., Thalassiosira spp., Coscinodiscus spp., and Chaetoceros spp., Diatoms with highest total diatom cell densities exceeding 200,000 cells l−1 on the Northeast Peak. In May–June, Phytoplankton community low nitrate and silicate concentrations over the Bank, along with patches of slightly elevated ammonium, were apparently supporting a predominantly dinoflagellate population; the toxic dinoflagellate Alexan- drium spp. reached 13,000 cells l−1. Diatom cell densities on the second cruise in May–June were less than 60,000 cells l−1 and their spatial distributions did not overlap with the highest cell densities of Alexandrium spp. or other dinoflagellates. On the third and last cruise, in June–July, reduced nitrate and silicate concentrations were accompanied by a shift in the phytoplankton community: Alexandrium spp. -
Marine Ecology Progress Series 346:75
Vol. 346: 75–88, 2007 MARINE ECOLOGY PROGRESS SERIES Published September 27 doi: 10.3354/meps07026 Mar Ecol Prog Ser OPENPEN ACCESSCCESS Tropical phytoplankton community development in mesocosms inoculated with different life stages Karolina Härnström1,*, Anna Godhe1, V. Saravanan2, Indrani Karunasagar2, Iddya Karunasagar2, Ann-Sofi Rehnstam-Holm3 1Department of Marine Ecology, Marine Botany, Göteborg University, PO Box 461, 405 30 Göteborg, Sweden 2Department of Fishery Microbiology, College of Fisheries, Karnataka Veterinary Animal and Fisheries Sciences University, PO Box 527, Mangalore 575 002, India 3Institution of Mathematics and Natural Sciences, Kristianstad University, 291 88 Kristianstad, Sweden ABSTRACT: Many diatom species have the ability to form benthic resting stages, but the importance of these stages as a supply for planktonic blooms is uncertain. A mesocosm study was carried out in December 2005 to January 2006 in Mangalore, India. Mesocosms were inoculated with various com- binations of benthic and/or planktonic cells, sampled from the coastal SE Arabian Sea, and the devel- opment of the planktonic community was followed. Diatoms dominated the phytoplankton commu- nity in all mesocosms, irrespective of inoculum. The most significant differences among inoculum types were altered species composition, and the timings of the maximum cell abundances, which lagged behind in the sediment mesocosms. Populations of Thalassiosira were initiated by both plank- ton and benthic propagules. Taxa known from temperate coastal areas to seed bloom by benthic propagules, such as Chaetoceros and Skeletonema, were predominantly seeded by planktonic cells in this experiment; this implies differential seeding strategy within the same species at different latitudes. The species assemblage encountered in the plankton and sediment was similar, which indicates that the benthic resting stages seed an autochthonous phytoplankton flora in the area. -
Sedimentation Patterns of Diatoms, Radiolarians, and Silicoflagellates in Santa Barbara Basin, California
LANGE ET AL.: SEDIMENTATION OF SILICEOUS MICROFOSSILS IN SANTA BARBARA BASIN CalCOFl Rep., Vol. 38, 1997 SEDIMENTATION PATTERNS OF DIATOMS, RADIOLARIANS, AND SILICOFLAGELLATES IN SANTA BARBARA BASIN, CALIFORNIA CARINA B. LANGE, AMY L. WEINHEIMER, FKEDA M. H. REID KOBERT C. THUNELL Scripps Institution of Oceanography University of South Carolina University of California, San Uiego Lkpartment of Geological Sciences 9.500 Gilman Drive Columbia. South Carolina 29208 La Jolla, California 92093-0215 ABSTRACT neously and are observed within the surface sediment We report on fluxes of siliceous microorganisms (di- layer in pristine conchtions, we assume that dissolution atoms, radiolarians, and silicoflagellates),organic carbon, is minimized by rapid descent through the water col- calcium carbonate, biogenic silica, and lithogenic parti- umn. Dissolution seems to take place immediately below cles in the Santa Barbara Basin (34"14'N, 12O0O2'W), the sedmendwater interface, and weakly silicified species offshore of California, in a sediment trap set 540 m deep, are removed from the sedimentary record. from August 1993 to November 1994. Although total mass flux was dominated by lithogenic components INTRODUCTION throughout the sampling period, we believe that over- In order to use the fossil record to interpret past cli- all flux variations at 540 m were closely coupled with matic conditions it is necessary to understand the nature oceanographic conditions at the surface. Organic car- of seasonal representation in the sediments (see review bon and biogenic silica fluxes show distinct variations, of Anderson 1996). With the increasing interest in high- with maxima during the upwelling period, from May resolution paleoceanographic studies and the closer link- to July 1994, and low fluxes from September to March. -
The Potential of Chaetoceros Muelleri in Bioremediation of Antibiotics: Performance and Optimization
International Journal of Environmental Research and Public Health Article The Potential of Chaetoceros muelleri in Bioremediation of Antibiotics: Performance and Optimization Amin Mojiri 1,*,† , Maedeh Baharlooeian 2,† and Mohammad Ali Zahed 3 1 Department of Civil and Environmental Engineering, Graduate School of Advanced Science and Engineering, Hiroshima University, Higashihiroshima 739-8527, Japan 2 Department of Marine Biology, Faculty of Marine Science and Oceanography, Khorramshahr University of Marine Science and Technology, Khorramshahr 64199-34619, Iran; [email protected] 3 Faculty of Biological Sciences, Kharazmi University, Tehran 15719-14911, Iran; [email protected] * Correspondence: [email protected] † These authors contributed equally to this work. Abstract: Antibiotics are frequently applied to treat bacterial infections in humans and animals. However, most consumed antibiotics are excreted into wastewater as metabolites or in their original form. Therefore, removal of antibiotics from aquatic environments is of high research interest. In this study, we investigated the removal of sulfamethoxazole (SMX) and ofloxacin (OFX) with Chaetoceros muelleri, a marine diatom. The optimization process was conducted using response surface methodology (RSM) with two independent parameters, i.e., the initial concentration of antibiotics and contact time. The optimum removal of SMX and OFX were 39.8% (0.19 mg L−1) and 42.5% (0.21 mg L−1) at the initial concentration (0.5 mg L−1) and contact time (6.3 days). Apart from that, the toxicity effect of antibiotics on the diatom was monitored in different SMX and OFX concentrations (0 to 50 mg L−1). The protein (mg L−1) and carotenoid (µg L−1) content increased Citation: Mojiri, A.; Baharlooeian, when the antibiotic concentration increased up to 20 mg L−1, while cell viability was not significantly M.; Zahed, M.A. -
Proquest Dissertations
THE INTEGRON AND ITS GENE CASSETTES: MOLECULAR ECOLOGY OF A MOBILE GENE POOL by Jeremy Edmund Koenig Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at Dalhousie University Halifax, Nova Scotia June 2009 © Copyright by Jeremy Edmund Koenig, 2009 Library and Archives Bibliotheque et 1*1 Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington Ottawa ON K1A 0N4 Ottawa ON K1A 0N4 Canada Canada Your file Votre refinance ISBN: 978-0-494-56421-9 Our file Notre reference ISBN: 978-0-494-56421-9 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library and permettant a la Bibliotheque et Archives Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par I'lnternet, prefer, telecommunication or on the Internet, distribuer et vendre des theses partout dans le loan, distribute and sell theses monde, a des fins commerciales ou autres, sur worldwide, for commercial or non support microforme, papier, electronique et/ou commercial purposes, in microform, autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in this et des droits moraux qui protege cette these. Ni thesis. Neither the thesis nor la these ni des extraits substantiels de celle-ci substantial extracts from it may be ne doivent §tre imprimes ou autrement printed or otherwise reproduced reproduits sans son autorisation. -
A Genomic Journey Through a Genus of Large DNA Viruses
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Virology Papers Virology, Nebraska Center for 2013 Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses Adrien Jeanniard Aix-Marseille Université David D. Dunigan University of Nebraska-Lincoln, [email protected] James Gurnon University of Nebraska-Lincoln, [email protected] Irina V. Agarkova University of Nebraska-Lincoln, [email protected] Ming Kang University of Nebraska-Lincoln, [email protected] See next page for additional authors Follow this and additional works at: https://digitalcommons.unl.edu/virologypub Part of the Biological Phenomena, Cell Phenomena, and Immunity Commons, Cell and Developmental Biology Commons, Genetics and Genomics Commons, Infectious Disease Commons, Medical Immunology Commons, Medical Pathology Commons, and the Virology Commons Jeanniard, Adrien; Dunigan, David D.; Gurnon, James; Agarkova, Irina V.; Kang, Ming; Vitek, Jason; Duncan, Garry; McClung, O William; Larsen, Megan; Claverie, Jean-Michel; Van Etten, James L.; and Blanc, Guillaume, "Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses" (2013). Virology Papers. 245. https://digitalcommons.unl.edu/virologypub/245 This Article is brought to you for free and open access by the Virology, Nebraska Center for at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Virology Papers by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Adrien Jeanniard, David D. Dunigan, James Gurnon, Irina V. Agarkova, Ming Kang, Jason Vitek, Garry Duncan, O William McClung, Megan Larsen, Jean-Michel Claverie, James L. Van Etten, and Guillaume Blanc This article is available at DigitalCommons@University of Nebraska - Lincoln: https://digitalcommons.unl.edu/ virologypub/245 Jeanniard, Dunigan, Gurnon, Agarkova, Kang, Vitek, Duncan, McClung, Larsen, Claverie, Van Etten & Blanc in BMC Genomics (2013) 14. -
Host-Microbe Relations: a Phylogenomics-Driven Bioinformatic Approach to the Characterization of Microbial DNA from Heterogeneous Sequence Data
Host-Microbe Relations: A Phylogenomics-Driven Bioinformatic Approach to the Characterization of Microbial DNA from Heterogeneous Sequence Data Timothy Patrick Driscoll Dissertation submitted to the faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy In Genetics, Bioinformatics, and Computational Biology Joseph J Gillespie David R Bevan Madhav V Marathe T M Murali May 1st, 2013 Blacksburg, Virginia Keywords: phylogenomics, genome-mining, host-microbe interactions, genomics, bioinformatics, symbiosis, bacteria, lateral gene transfer Copyright 2013 Host-Microbe Relations: A Phylogenomics-Driven Bioinformatic Approach to the Characterization of Microbial DNA from Heterogeneous Sequence Data Timothy Patrick Driscoll ABSTRACT Plants and animals are characterized by intimate, enduring, often indispensable, and always complex associations with microbes. Therefore, it should come as no surprise that when the genome of a eukaryote is sequenced, a medley of bacterial sequences are produced as well. These sequences can be highly informative about the interactions between the eukaryote and its bacterial cohorts; unfortunately, they often comprise a vanishingly small constituent within a heterogeneous mixture of microbial and host sequences. Genomic analyses typically avoid the bacterial sequences in order to obtain a genome sequence for the host. Metagenomic analysis typically avoid the host sequences in order to analyze community composition and functional diversity of the bacterial component. This dissertation describes the development of a novel approach at the intersection of genomics and metagenomics, aimed at the extraction and characterization of bacterial sequences from heterogeneous sequence data using phylogenomic and bioinformatic tools. To achieve this objective, three interoperable workflows were constructed as modular computational pipelines, with built-in checkpoints for periodic interpretation and refinement.