The Potential of Chaetoceros Muelleri in Bioremediation of Antibiotics: Performance and Optimization
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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Measurements of Plankton Distribution in the Ocean Using
Measurements of Plankton Distribution in the Ocean Using Submersible Holography Edwin Malkiel, Omar Alquaddoomi and Joseph Katz Department of Mechanical Engineering, The Johns Hopkins University Baltimore, MD 21218 USA Abstract A submersible holography system for in situ recordings of the spatial distribution of plankton has been developed and deployed. The system utilizes a ruby laser with an in-line recording configuration and has a sample volume of 732 ml. The reconstructed images have a resolution ranging from 10 - 20 µm for spherical particles and 3 µm for linear particles that lie within 100 mm from the film. Reconstructed volumes from holograms recorded during two recent deployments in the Strait of Georgia are scanned to obtain focused images of the particles, their position, size, orientation. The particles are also classified to several groups based on their morphological characteristics. One of the sets includes holograms recorded during a 15 minute vertical transect of the top 30 m of the water column. Along with the holograms, the data includes records of depth, temperature, salinity, dissolved oxygen and optical transmissivity. The results show substantial variations in population makeup between layers spaced a short distance apart, particle concentration maxima at and near a pycnocline and evidence of zooplankton migration. A predominant horizontal diatom orientation is indicated in the region of peak diatom concentration. Individual holograms show clustering within different classes of plankton. Keywords: holography, plankton distribution, thin layer, copepod 1.0 Introduction As demand on the world's fisheries increase, there is considerable concern over the sustainability of such resources. There is also concern over the increasing frequency of harmful algal blooms in coastal waters, not only because of their effect on the fisheries, but also because their effect on people. -
Marine Plankton Diatoms of the West Coast of North America
MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. CUPP UNIVERSITY OF CALIFORNIA PRESS BERKELEY AND LOS ANGELES 1943 BULLETIN OF THE SCRIPPS INSTITUTION OF OCEANOGRAPHY OF THE UNIVERSITY OF CALIFORNIA LA JOLLA, CALIFORNIA EDITORS: H. U. SVERDRUP, R. H. FLEMING, L. H. MILLER, C. E. ZoBELL Volume 5, No.1, pp. 1-238, plates 1-5, 168 text figures Submitted by editors December 26,1940 Issued March 13, 1943 Price, $2.50 UNIVERSITY OF CALIFORNIA PRESS BERKELEY, CALIFORNIA _____________ CAMBRIDGE UNIVERSITY PRESS LONDON, ENGLAND [CONTRIBUTION FROM THE SCRIPPS INSTITUTION OF OCEANOGRAPHY, NEW SERIES, No. 190] PRINTED IN THE UNITED STATES OF AMERICA Taxonomy and taxonomic names change over time. The names and taxonomic scheme used in this work have not been updated from the original date of publication. The published literature on marine diatoms should be consulted to ensure the use of current and correct taxonomic names of diatoms. CONTENTS PAGE Introduction 1 General Discussion 2 Characteristics of Diatoms and Their Relationship to Other Classes of Algae 2 Structure of Diatoms 3 Frustule 3 Protoplast 13 Biology of Diatoms 16 Reproduction 16 Colony Formation and the Secretion of Mucus 20 Movement of Diatoms 20 Adaptations for Flotation 22 Occurrence and Distribution of Diatoms in the Ocean 22 Associations of Diatoms with Other Organisms 24 Physiology of Diatoms 26 Nutrition 26 Environmental Factors Limiting Phytoplankton Production and Populations 27 Importance of Diatoms as a Source of food in the Sea 29 Collection and Preparation of Diatoms for Examination 29 Preparation for Examination 30 Methods of Illustration 33 Classification 33 Key 34 Centricae 39 Pennatae 172 Literature Cited 209 Plates 223 Index to Genera and Species 235 MARINE PLANKTON DIATOMS OF THE WEST COAST OF NORTH AMERICA BY EASTER E. -
Dynamics of Late Spring and Summer Phytoplankton Communities on Georges Bank, with Emphasis on Diatoms, Alexandrium Spp., and Other Dinoflagellates
Deep-Sea Research II 103 (2014) 120–138 Contents lists available at ScienceDirect Deep-Sea Research II journal homepage: www.elsevier.com/locate/dsr2 Dynamics of late spring and summer phytoplankton communities on Georges Bank, with emphasis on diatoms, Alexandrium spp., and other dinoflagellates Rachel M. Gettings, David W. Townsend n, Maura A. Thomas, Lee Karp-Boss School of Marine Sciences, University of Maine, Orono, ME, USA article info abstract Available online 18 May 2013 We analyzed the distribution, abundance, and succession patterns of major phytoplankton taxa on Keywords: Georges Bank in relation to hydrography, nutrients, and size-fractionated chlorophyll concentrations 4 μ o μ – Georges Bank ( 20 m; 20 m) on three oceanographic cruises from late spring through summer 2008 (28 April 5 Alexandrium May, 27 May–4 June, and 27 June–3 July). The April–May phytoplankton community was dominated Dinoflagellates numerically by the diatoms Skeletonema spp., Thalassiosira spp., Coscinodiscus spp., and Chaetoceros spp., Diatoms with highest total diatom cell densities exceeding 200,000 cells l−1 on the Northeast Peak. In May–June, Phytoplankton community low nitrate and silicate concentrations over the Bank, along with patches of slightly elevated ammonium, were apparently supporting a predominantly dinoflagellate population; the toxic dinoflagellate Alexan- drium spp. reached 13,000 cells l−1. Diatom cell densities on the second cruise in May–June were less than 60,000 cells l−1 and their spatial distributions did not overlap with the highest cell densities of Alexandrium spp. or other dinoflagellates. On the third and last cruise, in June–July, reduced nitrate and silicate concentrations were accompanied by a shift in the phytoplankton community: Alexandrium spp. -
Marine Ecology Progress Series 346:75
Vol. 346: 75–88, 2007 MARINE ECOLOGY PROGRESS SERIES Published September 27 doi: 10.3354/meps07026 Mar Ecol Prog Ser OPENPEN ACCESSCCESS Tropical phytoplankton community development in mesocosms inoculated with different life stages Karolina Härnström1,*, Anna Godhe1, V. Saravanan2, Indrani Karunasagar2, Iddya Karunasagar2, Ann-Sofi Rehnstam-Holm3 1Department of Marine Ecology, Marine Botany, Göteborg University, PO Box 461, 405 30 Göteborg, Sweden 2Department of Fishery Microbiology, College of Fisheries, Karnataka Veterinary Animal and Fisheries Sciences University, PO Box 527, Mangalore 575 002, India 3Institution of Mathematics and Natural Sciences, Kristianstad University, 291 88 Kristianstad, Sweden ABSTRACT: Many diatom species have the ability to form benthic resting stages, but the importance of these stages as a supply for planktonic blooms is uncertain. A mesocosm study was carried out in December 2005 to January 2006 in Mangalore, India. Mesocosms were inoculated with various com- binations of benthic and/or planktonic cells, sampled from the coastal SE Arabian Sea, and the devel- opment of the planktonic community was followed. Diatoms dominated the phytoplankton commu- nity in all mesocosms, irrespective of inoculum. The most significant differences among inoculum types were altered species composition, and the timings of the maximum cell abundances, which lagged behind in the sediment mesocosms. Populations of Thalassiosira were initiated by both plank- ton and benthic propagules. Taxa known from temperate coastal areas to seed bloom by benthic propagules, such as Chaetoceros and Skeletonema, were predominantly seeded by planktonic cells in this experiment; this implies differential seeding strategy within the same species at different latitudes. The species assemblage encountered in the plankton and sediment was similar, which indicates that the benthic resting stages seed an autochthonous phytoplankton flora in the area. -
Sedimentation Patterns of Diatoms, Radiolarians, and Silicoflagellates in Santa Barbara Basin, California
LANGE ET AL.: SEDIMENTATION OF SILICEOUS MICROFOSSILS IN SANTA BARBARA BASIN CalCOFl Rep., Vol. 38, 1997 SEDIMENTATION PATTERNS OF DIATOMS, RADIOLARIANS, AND SILICOFLAGELLATES IN SANTA BARBARA BASIN, CALIFORNIA CARINA B. LANGE, AMY L. WEINHEIMER, FKEDA M. H. REID KOBERT C. THUNELL Scripps Institution of Oceanography University of South Carolina University of California, San Uiego Lkpartment of Geological Sciences 9.500 Gilman Drive Columbia. South Carolina 29208 La Jolla, California 92093-0215 ABSTRACT neously and are observed within the surface sediment We report on fluxes of siliceous microorganisms (di- layer in pristine conchtions, we assume that dissolution atoms, radiolarians, and silicoflagellates),organic carbon, is minimized by rapid descent through the water col- calcium carbonate, biogenic silica, and lithogenic parti- umn. Dissolution seems to take place immediately below cles in the Santa Barbara Basin (34"14'N, 12O0O2'W), the sedmendwater interface, and weakly silicified species offshore of California, in a sediment trap set 540 m deep, are removed from the sedimentary record. from August 1993 to November 1994. Although total mass flux was dominated by lithogenic components INTRODUCTION throughout the sampling period, we believe that over- In order to use the fossil record to interpret past cli- all flux variations at 540 m were closely coupled with matic conditions it is necessary to understand the nature oceanographic conditions at the surface. Organic car- of seasonal representation in the sediments (see review bon and biogenic silica fluxes show distinct variations, of Anderson 1996). With the increasing interest in high- with maxima during the upwelling period, from May resolution paleoceanographic studies and the closer link- to July 1994, and low fluxes from September to March. -
Proquest Dissertations
THE INTEGRON AND ITS GENE CASSETTES: MOLECULAR ECOLOGY OF A MOBILE GENE POOL by Jeremy Edmund Koenig Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at Dalhousie University Halifax, Nova Scotia June 2009 © Copyright by Jeremy Edmund Koenig, 2009 Library and Archives Bibliotheque et 1*1 Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington Ottawa ON K1A 0N4 Ottawa ON K1A 0N4 Canada Canada Your file Votre refinance ISBN: 978-0-494-56421-9 Our file Notre reference ISBN: 978-0-494-56421-9 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library and permettant a la Bibliotheque et Archives Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par I'lnternet, prefer, telecommunication or on the Internet, distribuer et vendre des theses partout dans le loan, distribute and sell theses monde, a des fins commerciales ou autres, sur worldwide, for commercial or non support microforme, papier, electronique et/ou commercial purposes, in microform, autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in this et des droits moraux qui protege cette these. Ni thesis. Neither the thesis nor la these ni des extraits substantiels de celle-ci substantial extracts from it may be ne doivent §tre imprimes ou autrement printed or otherwise reproduced reproduits sans son autorisation. -
Taxonomic Variability of Phosphorus Stress in Sargasso Sea Phytoplankton
Notes 2303 P. R. PUGH, AND M. H. THURSTON. 1984. The diel migrations 2002. Midnight sinking behaviour in Calanus ®nmarchicus:A and distributions within a mesopelagic community in the north response to satiation or krill predation? Mar. Ecol. Prog. Ser. east Atlantic. 1. Introduction and sampling procedures. Prog. 240: 183±194. Oceanogr. 13: 245±268. THUESEN,E.V.,AND J. J. CHILDRESS. 1993. Enzymatic activities ROSS,T.,AND R. LUECK. 2003. Sound scattering from oceanic tur- and metabolic rates of pelagic chaetognaths: Lack of depth- bulence. Geophys. Res. Lett. 30: 10.1029/2002GL016733. related declines. Limnol. Oceanogr. 38: 935±948. SAMEOTO, D., N. COCHRANE, AND A. HERMAN. 1993. Convergence VOLK,T.,AND M. I. HOFFERT. 1985. Ocean carbon pumps: Analysis of acoustic, optical and net-catch estimates of Euphausiid of relative strengths and ef®ciencies in ocean-driven atmo- abundance: Use of arti®cial light to reduce net avoidance. Can. spheric pCO2 changes, p. 99±110. In E. T. Sundquist and W. J. Fish. Aquat. Sci. 50: 334±346. S. Broecker [eds.], The carbon cycle and atmospheric CO2, SCHNETZER, A., AND D. K. STEINBERG. 2002. Active transport of natural variations Archean to Present. American Geophysical particulate organic carbon and nitrogen by vertically migrating Union monograph 32. zooplankton in the Sargasso Sea. Mar. Ecol. Prog. Ser. 234: WIEBE, P. H. 1988. Functional regression equations for zooplankton 71±84. displacement volumes, wet weight, dry weight and carbon: A STEINBERG, D. K., C. A. CARLSON,N.R.BATES,S.A.GOLD- correction. Fish. Bull. 86: 833±835. THWAIT,L.P.MADIN, AND A. -
A Guide to Marine Plankton
"Knowledge of the oceans is more than a matter of curiosity. Our very survival may hinge upon it.“ - John F. Kennedy - Quick Plankton Guide Conscinodiscus Chaetoceros Chaetoceros Ditylum Navicula Cylindrotheca Stephanopyxis Thalassionema dinoflagellate dinoflagellate dinoflagellate Licmorpha Protoperidinium Ceratium Ceratium ciliates radiolarian foramniferan jelly medusa jelly medusa ctenophore ctenophore Oweniidae larva Quick Plankton Guide polychaete larvae arrow worm snail veliger pteropod bivalve veliger cladoceran copepod nauplius copepod cumacean krill barnacle nauplius barnacle cyprid shrimp crab zoea crab megalop urchin larva sea star larva tunicate larva fish egg fish larva Diatoms Taxonomy Size Kingdom: Protista 5-60 µm Phylum: Bacillariophyta chains can be longer Diatoms are single-celled algae, usually golden-brown or yellow-green. Diatoms typically dominate the phytoplankton community in temperate regions. They are important producers, forming the base of ocean food chains. Diatoms are probably the single most important food source in the ocean. Energy source Sun - Diatoms are photosynthesizers. Predators Zooplankton. Life span A few days to a few weeks. Viewing tips To see phytoplankton well, you typically need 100X magnification or greater. It is easy to flood plankton with too much light, so reduce light and illuminate the slide from below. Interesting facts Diatoms produce oxygen through the process of photosynthesis and, along with the other phytoplankton, are responsible for 50-85% of the Earth’s oxygen. Diatoms use oil and many spines to help stay afloat in the ocean. Some also form chains to increase their ability to float. Floating near the surface is important because diatoms need the sun to produce energy, and the sunlight only penetrates to approx. -
First Identification of Marine Diatoms with Anti-Tuberculosis Activity
www.nature.com/scientificreports Correction: Author Correction OPEN First identifcation of marine diatoms with anti-tuberculosis activity Received: 11 October 2017 Chiara Lauritano1, Jesús Martín2, Mercedes de la Cruz2, Fernando Reyes 2, Accepted: 21 January 2018 Giovanna Romano 1 & Adrianna Ianora1 Published: xx xx xxxx Marine microalgae are considered a potentially new and valuable source of biologically active compounds for applications in several biotechnology sectors. They can be easily cultured, have short generation times and enable an environmentally-friendly approach to drug discovery by overcoming problems associated with the over-utilization of marine resources and the use of destructive collection practices. Considering the increasing rate of antibiotic-resistance bacteria and infections by fungi, 46 microalgae have been screened in this study for possible antibacterial and antifungal activities. Two diferent extraction methods have been used in order to increase the probability of fnding positive hits. In particular, we screened microalgae in both control and nutrient stress conditions. We also tested diferent strains for 7 species in order to study potentially diferent bioactivities due to strain diversity. Results showed that extracts of two diatoms, Skeletonema costatum and Chaetoceros pseudocurvisetus, had anti-tuberculosis activity and were active only when cultured in the control and phosphate- starvation conditions, while the nitrogen starvation condition showed no activity. In addition, we tested both the organic and water extracts and found that only the organic extracts for both diatoms were active. The organic extracts of these two diatom species were not toxic on normal human cell lines. Microalgae are eukaryotic plants that contribute up to 25% of global productivity and 50% of all aquatic pro- ductivity1,2. -
Phd Thesis the Taxa Are Listed Alphabetically Within the Bacteriastrum Genera and Each of the Chaetoceros Generic Subdivision (Subgenera)
FACULTY OF SCIENCE DEPARTMENT OF GEOLOGY INTERDISCIPLINARY DOCTORAL STUDY IN OCEANOLOGY Sunčica Bosak TAXONOMY AND ECOLOGY OF THE PLANKTONIC DIATOM FAMILY CHAETOCEROTACEAE (BACILLARIOPHYTA) FROM THE ADRIATIC SEA DOCTORAL THESIS Zagreb, 2013 PRIRODOSLOVNO-MATEMATIČKI FAKULTET GEOLOŠKI ODSJEK INTERDISCIPLINARNI DOKTORSKI STUDIJ IZ OCEANOLOGIJE Sunčica Bosak TAKSONOMIJA I EKOLOGIJA PLANKTONSKIH DIJATOMEJA IZ PORODICE CHAETOCEROTACEAE (BACILLARIOPHYTA) U JADRANSKOM MORU DOKTORSKI RAD Zagreb, 2013 FACULTY OF SCIENCE DEPARTMENT OF GEOLOGY INTERDISCIPLINARY DOCTORAL STUDY IN OCEANOLOGY Sunčica Bosak TAXONOMY AND ECOLOGY OF THE PLANKTONIC DIATOM FAMILY CHAETOCEROTACEAE (BACILLARIOPHYTA) FROM THE ADRIATIC SEA DOCTORAL THESIS Supervisors: Dr. Diana Sarno Prof. Damir Viličić Zagreb, 2013 PRIRODOSLOVNO-MATEMATIČKI FAKULTET GEOLOŠKI ODSJEK INTERDISCIPLINARNI DOKTORSKI STUDIJ IZ OCEANOLOGIJE Sunčica Bosak TAKSONOMIJA I EKOLOGIJA PLANKTONSKIH DIJATOMEJA IZ PORODICE CHAETOCEROTACEAE (BACILLARIOPHYTA) U JADRANSKOM MORU DOKTORSKI RAD Mentori: Dr. Diana Sarno Prof. dr. sc. Damir Viličić Zagreb, 2013 This doctoral thesis was made in the Division of Biology, Faculty of Science, University of Zagreb under the supervision of Prof. Damir Viličić and in one part in Stazione Zoologica Anton Dohrn in Naples, Italy under the supervision of Diana Sarno. The doctoral thesis was made within the University interdisciplinary doctoral study in Oceanology at the Department of Geology, Faculty of Science, University of Zagreb. The presented research was mainly funded by the Ministry of Science, Education and Sport of the Republic of Croatia Project No. 119-1191189-1228 and partially by the two transnational access projects (BIOMARDI and NOTCH) funded by the European Community – Research Infrastructure Action under the FP7 ‘‘Capacities’’ Specific Programme (Ref. ASSEMBLE grant agreement no. 227799). ACKNOWLEDGEMENTS ... to my Croatian supervisor and my boss, Prof. -
Congreso De Ficología De Latinoamericana Y El Caribe
CONGRESO DE FICOLOGÍA DE LATINOAMERICANA Y EL CARIBE XI VERSIÓN Cali, Colombia 5 al 10 de noviembre de 2017 ISNN: i Congreso de Ficología de Latinoamericana y el Caribe CONGRESO DE FICOLOGÍA DE LATINOAMERICANA Y EL CARIBE XI VERSIÓN 05 al 11 de noviembre, Cali, Colombia Colombia 05-11 de noviembre de 2017 Congreso de Ficología de Latinoamericana y el Caribe y la IX reunión Iberoamericana de Ficología. XI Versión E-Book ISNN: Compilado por comité editorial Diciembre de 2017 Editoras: L.I. Quan-Young y C. Bustamante-Gil. XI versión ii Congreso de Ficología de Latinoamericana y el Caribe ORGANIZAN APOYAN XI versión iii Congreso de Ficología de Latinoamericana y el Caribe Mesa Directiva y Comités Presidente Dr. Enrique Javier Peña Salamanca (Universidad del Valle) Secretaria Ejecutiva M.Sc. Claudia Andramunio-Acero (Universidad de Bogotá Jorge Tadeo Lozano) Vocal Académico Dr. Gabriel Pinilla (Universidad Nacional de Colombia-Sede Bogotá) Dra. Mónica Tatiana López Muñoz (Universidad de Antioquia) Vocal de Difusión Dr. Luis Carlos Montenegro (Universidad Nacional de Colombia-Sede Bogotá) Editoras Ejecutivas Dra. Lizette Irene Quan Young (Universidad CES) Cand Dra. Carolina Bustamante Gil (Universidad de Antioquia) Tesorero Dr. Ernesto Mancera (Universidad Nacional de Colombia-Sede Bogotá) Equipo Editorial Dra. Lizette Irene Quan Young. Universidad CES Cand. Dra. Carolina BustamanteGil. Universidad de Antioquia Estudiante Biol. Cristina Aristizabal Osorio. Universidad CES Biol. Sara Cadavid González. Universidad de Antioquia Biol. Liliana Ospina Calle. Universidad de Antioquia MsC. Claudia Patricia Andramunio Acero. Universidad de Bogotá Jorge Tadeo Lozano editorial XI versión iv Congreso de Ficología de Latinoamericana y el Caribe Comité Científico Internacional Dra.