Simultaneous Hyperaccumulation of Nickel and Cobalt in the Tree Glochidion Cf
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Ultramafic Geocology of South and Southeast Asia
Galey et al. Bot Stud (2017) 58:18 DOI 10.1186/s40529-017-0167-9 REVIEW Open Access Ultramafc geoecology of South and Southeast Asia M. L. Galey1, A. van der Ent2,3, M. C. M. Iqbal4 and N. Rajakaruna5,6* Abstract Globally, ultramafc outcrops are renowned for hosting foras with high levels of endemism, including plants with specialised adaptations such as nickel or manganese hyperaccumulation. Soils derived from ultramafc regoliths are generally nutrient-defcient, have major cation imbalances, and have concomitant high concentrations of potentially phytotoxic trace elements, especially nickel. The South and Southeast Asian region has the largest surface occur- rences of ultramafc regoliths in the world, but the geoecology of these outcrops is still poorly studied despite severe conservation threats. Due to the paucity of systematic plant collections in many areas and the lack of georeferenced herbarium records and databased information, it is not possible to determine the distribution of species, levels of end- emism, and the species most threatened. However, site-specifc studies provide insights to the ultramafc geoecology of several locations in South and Southeast Asia. The geoecology of tropical ultramafc regions difers substantially from those in temperate regions in that the vegetation at lower elevations is generally tall forest with relatively low levels of endemism. On ultramafc mountaintops, where the combined forces of edaphic and climatic factors inter- sect, obligate ultramafc species and hyperendemics often occur. Forest clearing, agricultural development, mining, and climate change-related stressors have contributed to rapid and unprecedented loss of ultramafc-associated habitats in the region. The geoecology of the large ultramafc outcrops of Indonesia’s Sulawesi, Obi and Halmahera, and many other smaller outcrops in South and Southeast Asia, remains largely unexplored, and should be prioritised for study and conservation. -
Chapter 25. the Ecophysiology, Genetics, Adaptive Significance, And
Chapter 25 The ecophysiology, genetics, adaptive significance, and biotechnology of nickel hyperaccumulation in plants Anthony L. Ferrero1, Peter R. Walsh1 and Nishanta Rajakaruna1,2 1Biological Sciences Department, California Polytechnic State University, San Luis Obispo, CA, United States, 2Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa 25.1 Introduction Plants are challenged by various environmental stressors that interfere with their biochemical and physiological pro- cesses. Some heavy metals have critical physiological roles [1À3] in plants, but elevated concentrations of these essential heavy metals or exposure to other heavy metals, which lack any known physiological roles, may result in stress via interference with either the function of enzymes or information-coding DNA or RNA in cells [4À6].Some plants are more metal-tolerant than others, and thus heavy metal tolerance has been central to understanding adaptive evolution in plants [7À12] as well as the development of biotechnological fields such as phytoremediation and phyto- mining [13À16]. Some soils, including serpentine soils [17], have naturally high levels of heavy metals, and plants that can withstand these metal-rich soils are known as metallophytes [18,19]. Metallophytes tolerate metals via exclusion or accumulation. Most metallophytes exclude metals by chelation, binding ions to organic acids or other ligands, or by sequestration, storing metals within vacuoles of root cells where they cannot interrupt key cellular processes [20]. Accumulators, on the other hand, concentrate metals in plant parts, especially the epidermal tissues of leaves, whereas excluders generally keep shoot metal levels consistently low over a wide range of soil metal concentrations. Some metallophytes, termed “hyperaccumulators” [21À23], take up and sequester considerably high concentrations of metals in their aboveground tissues, often beyond thresholds that would be lethal to most plants [3]. -
Functional Characterization of NRAMP3 and NRAMP4 from the Metal Hyperaccumulator Thlaspi Caerulescens
Research FunctionalBlackwellOxford,NPHNew0028-646X1469-8137©269410.1111/j.1469-8137.2008.02694.xNovember0637???650???OriginalXX The Phytologist Authors UK Article Publishing 2008 (2008). Ltd Journal compilation © New Phytologist (2008) characterization of XX NRAMP3 and NRAMP4 from the metal hyperaccumulator Thlaspi caerulescens Ronald J. F. J. Oomen1,7*, Jian Wu2,3*, Françoise Lelièvre1, Sandrine Blanchet1, Pierre Richaud4,5,6, Hélène Barbier-Brygoo1, Mark G. M. Aarts2 and Sébastien Thomine1 1Institut des Sciences du Végétal, CNRS, Avenue de la Terrasse, Gif-sur-Yvette, France; 2Laboratory of Genetics, Wageningen University, Arboretumlaan 4, NL–6703 BD Wageningen, The Netherlands; 3Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Zhongguancun South Street 12, Beijing 100081, China; 4CEA, DSV, IBEB, Lab Bioenerget Biotechnol Bacteries & Microalgues, Saint-Paul-lez-Durance, F–13108, France; 5CNRS, UMR Biol Veget & Microbiol Environ, Saint-Paul-lez-Durance, F–13108, France; 6Aix-Marseille Université, Saint-Paul-lez-Durance, F-13108, France; 7(current address) Biochimie & Physiologie Moléculaire des Plantes, UMR5004, CNRS/INRA/SupAgro/UM II, F-34060 Montpellier Cedex 1, France Summary Author for correspondence: • The ability of metal hyperaccumulating plants to tolerate and accumulate heavy Ronald J. F. J. Oomen metals results from adaptations of metal homeostasis. NRAMP metal transporters Tel: +33499613152 were found to be highly expressed in some hyperaccumulating plant species. Fax: +33467525737 TcNRAMP3 TcNRAMP4 Email: [email protected] • Here, we identified and , the closest homologues to AtNRAMP3 and AtNRAMP4 in Thlaspi caerulescens and characterized them by 29 August 2008 Received: expression analysis, confocal imaging and heterologous expression in yeast and Accepted: 21 October 2008 Arabidopsis thaliana. -
The Potential Use of Indigenous Nickel Hyperaccumulators for Small-Scale Mining in the Philippines
JOURNAL OF DEGRADED AND MINING LANDS MANAGEMENT ISSN: 2339-076X, Volume 1, Number 1 (October 2013): 21-26 Research Article The potential use of indigenous nickel hyperaccumulators for small-scale mining in The Philippines E.S. Fernando1, M.O. Quimado1, L.C. Trinidad2, A.I. Doronila3,* 1 Department of Forest Biological Sciences, College of Forestry and Natural Resources, The University of the Philippines – Los Baños College, 4031 Laguna, Philippines 2 Central Analytical Services Laboratory,National Institute of Molecular Biology and Biotechnology,The University of the Philippines – Los Baños College 3 School of Chemistry, University of Melbourne, Victoria 3010, Australia *corresponding author: [email protected] Abstract : Uptake of nickel and three other heavy metals (copper, cobalt, and chromium) was examined in 33 species of the common and rare native vascular plants growing in an ultramafic area currently subjected to mining in Zambales Province, Luzon, Philippines. Leaf tissue samples were initially screened in the field using filter paper impregnated with dimethylglyoxime (1% solution in 70% ethyl alcohol) and later analyzed by atomic absorption spectroscopy. One species was found to be a hypernickelophore (>10,000 µg/g), eight species were nickel hyperaccumulators (>1,000 µg/g), nineteen species were hemi-accumulators (>100-1,000 µg/g), and five species were non-accumulators (<100 µg/g). This paper significantly adds to the list of hyperaccumulator species first reported for the Philippines in 1992. The findings will be discussed in context of using indigenous species for post mining ecological restoration and nickel phytoextraction in small-scale mining in the Philippines.. Keywords: hyperaccumulator species, nickel laterites, Zambales Introduction hyperaccumulated, however over 70% of hyperaccumulators are specific to Ni (Brooks, 1998; Hyperaccumulators are a suite of plants with the rare Baker et al., 2000). -
Phyllanthus Rufuschaneyi Roderick Bouman, Peter Van Welzen, Sukaibin Sumail, Guillaume Echevarria, Peter D Erskine, Antony Van Der Ent
Phyllanthus rufuschaneyi Roderick Bouman, Peter van Welzen, Sukaibin Sumail, Guillaume Echevarria, Peter D Erskine, Antony van der Ent To cite this version: Roderick Bouman, Peter van Welzen, Sukaibin Sumail, Guillaume Echevarria, Peter D Erskine, et al.. Phyllanthus rufuschaneyi: A new nickel hyperaccumulator from Sabah (Borneo Island) with potential for tropical agromining. Botanical Studies, Springer Verlag, 2018, 59 (1), 10.1186/s40529-018-0225-y. hal-01811437 HAL Id: hal-01811437 https://hal.archives-ouvertes.fr/hal-01811437 Submitted on 8 Jun 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Bouman et al. Bot Stud (2018) 59:9 https://doi.org/10.1186/s40529-018-0225-y ORIGINAL ARTICLE Open Access Phyllanthus rufuschaneyi: a new nickel hyperaccumulator from Sabah (Borneo Island) with potential for tropical agromining Roderick Bouman1,2,3, Peter van Welzen1,3, Sukaibin Sumail4, Guillaume Echevarria5, Peter D. Erskine6 and Antony van der Ent5,6* Abstract Background: Nickel hyperaccumulator plants are of much interest for their evolution and unique ecophysiology, and also for potential applications in agromining—a novel technology that uses plants to extract valuable metals from soil. -
Nickel Hyperaccumulation As an Elemental Defense of Streptanthus
Research NickelBlackwell Publishing, Ltd. hyperaccumulation as an elemental defense of Streptanthus polygaloides (Brassicaceae): influence of herbivore feeding mode Edward M. Jhee1, Robert S. Boyd1 and Micky D. Eubanks2 1Department of Biological Sciences and 2Department of Entomology and Plant Pathology, Auburn University, Auburn, AL 36849-5407, USA Summary Author for correspondence: • No study of a single nickel (Ni) hyperaccumulator species has investigated the Robert S. Boyd impact of hyperaccumulation on herbivores representing a variety of feeding modes. Tel: +1 334 844 1626 • Streptanthus polygaloides plants were grown on high- or low-Ni soils and a series Fax: +1 334 844 1645 Email: [email protected] of no-choice and choice feeding experiments was conducted using eight arthropod herbivores. Herbivores used were two leaf-chewing folivores (the grasshopper Received: 12 March 2005 Melanoplus femurrubrum and the lepidopteran Evergestis rimosalis), a dipteran Accepted: 24 May 2005 rhizovore (the cabbage maggot Delia radicum), a xylem-feeder (the spittlebug Philaenus spumarius), two phloem-feeders (the aphid, Lipaphis erysimi and the spidermite Trialeurodes vaporariorum) and two cell-disruptors (the bug Lygus lineolaris and the whitefly Tetranychus urticae). • Hyperaccumulated Ni significantly decreased survival of the leaf-chewers and rhizovore, and significantly reduced population growth of the whitefly cell-disruptor. However, vascular tissue-feeding insects were unaffected by hyperaccumulated Ni, as was the bug cell-disruptor. •We conclude that Ni can defend against tissue-chewing herbivores but is ineffective against vascular tissue-feeding herbivores. The effects of Ni on cell-disruptors varies, as a result of either variation of insect Ni sensitivity or the location of Ni in S. -
Species Selection Guidelines Tree Species Selection
Species selection guidelines Tree species selection This section of the plan provides guidance around the selection of species for use as street trees in the Sunshine Coast Council area and includes region-wide street tree palettes for specific functions and settings. More specific guidance on signature and natural character palettes and lists of trees suitable for use in residential streets for each of the region's 27 Local plan areas are contained within Part B – Street tree strategies of the plan. Street tree palettes will be periodically reviewed as an outcome of street tree trials, the development of new species varieties and cultivars, or the advent of new pest or disease threats that may alter the performance and reliability of currently listed species. The plan is to be used in association with the Sunshine Coast Council Open Space Landscape Infrastructure Manual where guidance for tree stock selection (in line with AS 2303–2018 Tree stock for landscape use) and tree planting and maintenance specifications can be found. For standard advanced tree planting detail, maintenance specifications and guidelines for the selection of tree stock see also the Sunshine Coast Open Space Landscape Infrastructure Manual – Embellishments – Planting Landscape). The manual's Plant Index contains a comprehensive list of all plant species deemed suitable for cultivation in Sunshine Coast amenity landscapes. For specific species information including expected dimensions and preferred growing conditions see Palettes – Planting – Planting index). 94 Sunshine Coast Street Tree Master Plan 2018 Part A Tree nomenclature Strategic outcomes The names of trees in this document follow the • Trees are selected by suitably qualified and International code of botanical nomenclature experienced practitioners (2012) with genus and species given, followed • Tree selection is locally responsive and by the plant's common name. -
Study of Heavy Metal Tolerance, Accumulation and Recovery in Hyperaccumulator Plant Species
STUDY OF HEAVY METAL TOLERANCE, ACCUMULATION AND RECOVERY IN HYPERACCUMULATOR PLANT SPECIES By RENGASAMY BOOMINATHAN A thesis submitted for the degree of Doctor of Philosophy School of Biotechnology and Biomolecular Science The University of New South Wales June,2002 Dedicated To My Mother TABLE OF CONTENTS Page Table of Contents List of Figures vm List of Tables 11 L- .. XXl L~ 6\- Abb'£evfaa c.-J.Ot !$, List of Appendices xxn Abstract xxm Acknowledgments XXVI CHAPTER 1 - INTRODUCTION 1. 1 Heavy Metals In The Environment 1 1. 1. 1 Cadmium 1 1. 1. 2 Nickel 2 1. 2 Phytoremediation 3 1. 3 Phytomining 4 1. 4 Hyperaccumulators 6 1. 5 Mechanisms of Heavy Metal Accumulation and Tolerance 8 1. 5. 1 Compartmentation 9 1. 5. 1. 1 Distribution Between Organs 9 1. 5. 1. 2 Intraorgan and Intracellular Distribution 12 1. 5. 2 Complexation With Organic Acids 14 1. 6 Oxidative Stress 16 1. 6. 1 Superoxide Dismutase 18 1. 6. 2 Catalase 20 1. 6. 3 Ascorbate Peroxidase 21 11 1. 6. 4 Hydrogen Peroxide 23 1. 6. 5 Lipid Peroxidation 24 1. 6. 6 Glutathione 26 1. 6. 6. 1 Effect of Heavy Metal 27 1. 6. 6. 2 Glutathione and Hydrogen Peroxide 28 1. 6. 7 Sulfhydryl Groups 29 1. 7 Phytochelatins 31 1. 8 Hairy Root Cultures 33 1. 9 Aims of This Study 35 CHAPTER 2 - MATERIALS AND METHODS 2. 1 Hairy Root Cultures 36 2. 1. 1 Nickel Hyperaccumulator (A. bertolonii) and Non-hyperaccumulator (N. tabacum) 38 2. 1. 1. 1 Short-term Ni Uptake by Live and Dead Biomass 38 2. -
Myrtle Rust Reviewed the Impacts of the Invasive Plant Pathogen Austropuccinia Psidii on the Australian Environment R
Myrtle Rust reviewed The impacts of the invasive plant pathogen Austropuccinia psidii on the Australian environment R. O. Makinson 2018 DRAFT CRCPLANTbiosecurity CRCPLANTbiosecurity © Plant Biosecurity Cooperative Research Centre, 2018 ‘Myrtle Rust reviewed: the impacts of the invasive pathogen Austropuccinia psidii on the Australian environment’ is licenced by the Plant Biosecurity Cooperative Research Centre for use under a Creative Commons Attribution 4.0 Australia licence. For licence conditions see: https://creativecommons.org/licenses/by/4.0/ This Review provides background for the public consultation document ‘Myrtle Rust in Australia – a draft Action Plan’ available at www.apbsf.org.au Author contact details R.O. Makinson1,2 [email protected] 1Bob Makinson Consulting ABN 67 656 298 911 2The Australian Network for Plant Conservation Inc. Cite this publication as: Makinson RO (2018) Myrtle Rust reviewed: the impacts of the invasive pathogen Austropuccinia psidii on the Australian environment. Plant Biosecurity Cooperative Research Centre, Canberra. Front cover: Top: Spotted Gum (Corymbia maculata) infected with Myrtle Rust in glasshouse screening program, Geoff Pegg. Bottom: Melaleuca quinquenervia infected with Myrtle Rust, north-east NSW, Peter Entwistle This project was jointly funded through the Plant Biosecurity Cooperative Research Centre and the Australian Government’s National Environmental Science Program. The Plant Biosecurity CRC is established and supported under the Australian Government Cooperative Research Centres Program. EXECUTIVE SUMMARY This review of the environmental impacts of Myrtle Rust in Australia is accompanied by an adjunct document, Myrtle Rust in Australia – a draft Action Plan. The Action Plan was developed in 2018 in consultation with experts, stakeholders and the public. The intent of the draft Action Plan is to provide a guiding framework for a specifically environmental dimension to Australia’s response to Myrtle Rust – that is, the conservation of native biodiversity at risk. -
Effects of Soil Amendments on Leaf Anatomical Characteristics
www.nature.com/scientificreports OPEN Efects of soil amendments on leaf anatomical characteristics of marigolds cultivated in cadmium‑spiked soils Alapha Thongchai1, Weeradej Meeinkuirt2,3*, Puntaree Taeprayoon2 & Isma‑ae Chelong1 The marigolds (Tagetes spp.) in this study were classifed as excluders for cadmium (Cd); however, their leaves also accumulated substantial Cd content. Among the experimental treatments (i.e., control, cattle manure, pig manure, and leonardite which served as soil amendments), pig manure resulted in signifcantly increased growth performance for all marigold cultivars as seen by relative growth rates (119–132.3%) and showed positive efects on leaf anatomy modifcations, e.g., thickness of spongy and palisade mesophyll, size of vein area and diameter of xylem cells. This may be due to substantially higher essential nutrient content, e.g., total nitrogen (N) and extractable phosphorus (P), in pig manure that aided all marigold cultivars, particularly the French cultivar which exhibited the highest relative growth rate (132.3%). In the Cd‑only treatment, cell disorganization was observed in vascular bundles as well as in palisade and spongy mesophyll, which may have been responsible for the lowest plant growth performance recorded in this study, particularly among the American and Honey cultivars (RGR = 73% and 77.3%, respectively). Organic amendments improve soil physicochemical factors and immobilize heavy metals in soil via adsorption and isolation of cationic compounds by forming stable complexes. Soil properties afecting the availability of cadmium (Cd) include: Cd adsorption and desorption on iron (Fe) and manganese (Mn) oxides; redox potential (Eh); presence of both calcium carbonate and oxyhydroxides; pH; organic matter (OM); ionic strength; ligand anions; cation exchange capacity (CEC); phosphorus (P); and the proportion of clay minerals and percentage of charged sites occupied by Cd. -
Bacterial Community Diversity in the Rhizosphere of Nickel
1 Bacterial community diversity in the rhizosphere of nickel 2 hyperaccumulator plant species from Borneo Island (Malaysia) 3 4 Séverine Lopez,1 Antony van der Ent,1,2 Sukaibin Sumail,3 John B. Sugau,3 Matsain Mohd 5 Buang,4 Zarina Amin,5 Guillaume Echevarria,1,2 Jean Louis Morel1 and Emile Benizri1 6 7 1Université de Lorraine, INRAE, Laboratoire Sols et Environnement, 54000, Nancy, France. 8 9 2Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of 10 Queensland, St Lucia, 4072, QLD, Australia. 11 12 3Sabah Parks, Kota Kinabalu, Sabah, Malaysia. 13 14 4Forest Research Centre, Sabah Forestry Department, Sandakan, Sabah, Malaysia. 15 16 5Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, 17 Malaysia. 18 19 20 SUMMARY 21 The Island of Borneo is a major biodiversity hotspot, and in the Malaysian state of Sabah, 22 ultramafic soils are extensive and home to more than 31 endemic nickel hyperaccumulator 23 plants. The aim of this study was to characterize the structure and the diversity of the 24 rhizosphere bacterial communities of several of these nickel hyperaccumulator plants and 25 factors that affect these bacterial communities in Sabah. The most abundant phyla were 26 Proteobacteria, Acidobacteria and Actinobacteria. At family level, Burkholderiaceae and 27 Xanthobacteraceae (Proteobacteria phylum) were the most abundant families in the 28 hyperaccumulator rhizospheres. Redundancy analysis based on soil chemical analyses and 29 relative abundances of the major bacterial phyla showed that abiotic factors of the studied sites 30 drove the bacterial diversity. For all R. aff. bengalensis rhizosphere soil samples, irrespective 31 of studied site, the bacterial diversity was similar. -
4. Les Bactéries PGPR
AVERTISSEMENT Ce document est le fruit d'un long travail approuvé par le jury de soutenance et mis à disposition de l'ensemble de la communauté universitaire élargie. Il est soumis à la propriété intellectuelle de l'auteur. Ceci implique une obligation de citation et de référencement lors de l’utilisation de ce document. D'autre part, toute contrefaçon, plagiat, reproduction illicite encourt une poursuite pénale. Contact : [email protected] LIENS Code de la Propriété Intellectuelle. articles L 122. 4 Code de la Propriété Intellectuelle. articles L 335.2- L 335.10 http://www.cfcopies.com/V2/leg/leg_droi.php http://www.culture.gouv.fr/culture/infos-pratiques/droits/protection.htm Thèse Présentée et soutenue publiquement pour l'obtention du titre de Docteur de l'Université de Lorraine Spécialité "Sciences Agronomiques" par Séverine Lopez Déterminisme de la diversité bactérienne rhizosphérique des hyperaccumulateurs de nickel Soutenue publiquement le 26 novembre 2018 Membres du jury : M. Thierry Lebeau Rapporteur Professeur, Université de Nantes, LPG, Nantes M. Yvan Moënne Loccoz Rapporteur Professeur, Université de Lyon, EM, Villeurbanne Mme Isabelle Laffont-Schwob Examinatrice Professeur, Aix-Marseille Université, LPED, Marseille Mme Corinne Leyval Examinatrice Directrice de recherche, Université de Lorraine, LIEC, Vandoeuvre-lès-Nancy M. Emile Benizri Directeur de thèse Professeur, Université de Lorraine, LSE, Vandœuvre-lès-Nancy M. Jean Louis Morel Co-directeur de thèse Professeur, Université de Lorraine, LSE, Vandœuvre-lès-Nancy Laboratoire Sols et Environnement 2, avenue de la forêt de Haye – BP 20163 54505 Vandoeuvre CEDEX Remerciements Remerciements Un grand homme m'a dit un jour que les protagonistes d'une thèse pouvaient être imagés en ingrédients d’une émulsion : parfois ça prend et parfois non.