Thesis Submitted for the Degree of Ph.D
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Title the Intertidal Biota of Volcanic Yankich Island (Middle
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Kyoto University Research Information Repository The Intertidal Biota of Volcanic Yankich Island (Middle Kuril Title Islands) Author(s) Kussakin, Oleg G.; Kostina, Elena E. PUBLICATIONS OF THE SETO MARINE BIOLOGICAL Citation LABORATORY (1996), 37(3-6): 201-225 Issue Date 1996-12-25 URL http://hdl.handle.net/2433/176267 Right Type Departmental Bulletin Paper Textversion publisher Kyoto University Pub!. Seto Mar. Bioi. Lab., 37(3/6): 201-225, 1996 201 The Intertidal Biota of Volcanic Y ankich Island (Middle Kuril Islands) 0LEG G. KUSSAKIN and ELENA E. KOSTINA Institute of Marine Biology, Academy of Sciences of Russia, Vladivostok 690041, Russia Abstract A description of the intertidal biota of volcanic Yankich Island (Ushishir Islands, Kuril Islands) is given. The species composition and vertical distribution pattern of the intertidal communities at various localities are described in relation to environmental factors, such as nature of the substrate, surf conditions and volcanic vent water. The macrobenthos is poor in the areas directly influenced by high tempera ture (20-40°C) and high sulphur content. There are no marked changes in the intertidal communities in the areas of volcanic springs that are characterised by temperature below 10°C and by the absence of sulphur compounds. In general, the species composi tion and distribution of the intertidal biota are ordinary for the intertidal zone of the middle Kuril Islands. But there are departures from the typical zonation of the intertidal biota. Also, mass populations of Balanus crenatus appear. -
Chaetal Type Diversity Increases During Evolution of Eunicida (Annelida)
Org Divers Evol (2016) 16:105–119 DOI 10.1007/s13127-015-0257-z ORIGINAL ARTICLE Chaetal type diversity increases during evolution of Eunicida (Annelida) Ekin Tilic1 & Thomas Bartolomaeus1 & Greg W. Rouse2 Received: 21 August 2015 /Accepted: 30 November 2015 /Published online: 15 December 2015 # Gesellschaft für Biologische Systematik 2015 Abstract Annelid chaetae are a superior diagnostic character Keywords Chaetae . Molecular phylogeny . Eunicida . on species and supraspecific levels, because of their structural Systematics variety and taxon specificity. A certain chaetal type, once evolved, must be passed on to descendants, to become char- acteristic for supraspecific taxa. Therefore, one would expect Introduction that chaetal diversity increases within a monophyletic group and that additional chaetae types largely result from transfor- Chaetae in annelids have attracted the interest of scientist for a mation of plesiomorphic chaetae. In order to test these hypoth- very long time, making them one of the most studied, if not the eses and to explain potential losses of diversity, we take up a most studied structures of annelids. This is partly due to the systematic approach in this paper and investigate chaetation in significance of chaetal features when identifying annelids, Eunicida. As a backbone for our analysis, we used a three- since chaetal structure and arrangement are highly constant gene (COI, 16S, 18S) molecular phylogeny of the studied in species and supraspecific taxa. Aside from being a valuable eunicidan species. This phylogeny largely corresponds to pre- source for taxonomists, chaetae have also been the focus of vious assessments of the phylogeny of Eunicida. Presence or many studies in functional ecology (Merz and Edwards 1998; absence of chaetal types was coded for each species included Merz and Woodin 2000; Merz 2015; Pernet 2000; Woodin into the molecular analysis and transformations for these char- and Merz 1987). -
Nereis Vexillosa Class: Polychaeta, Errantia
Phylum: Annelida Nereis vexillosa Class: Polychaeta, Errantia Order: Phyllodocida, Nereidiformia A large mussel worm Family: Nereididae, Nereidinae Taxonomy: One may find several subjective third setiger (Hilbig 1997). Posterior notopo- synonyms for Nereis vexillosa, but none are dial lobes gradually change into long strap- widely used currently. like ligules (Fig. 6), with dorsal cirrus inserted terminally (most important species characte- Description ristic). The parapodia of epitokous individuals Size: Individuals living in gravel are larger are modified for swimming and are wide and than those on pilings and sizes range from plate-like (Kozloff 1993). 150–300 mm in length (Johnson 1943; Rick- Setae (chaetae): Notopodia bear ho- etts and Calvin 1971; Kozloff 1993) and up mogomph spinigers anteriorly (Fig. 8d) that to 12 mm in width (Hartman 1968). gradually transition to few short homogomph Epitokous adults are much larger than sex- falcigers posteriorly (Fig. 8a). Both anterior ually immature individuals. For example, and posterior neuropodia have homo- and one year old heteronereids were at least 560 heterogomph spinigers (Fig. 8c, d) and heter- mm in length (Johnson 1943). ogomph falcigers (Fig. 8b) (Nereis, Hilbig Color: Body color grey and iridescent green, 1997). Acicula, or heavy internal black blue and red body color. Females have spines, are found on all noto- and neuropodia more a reddish posterior than males (Kozloff (Figs. 6). 1993). Eyes/Eyespots: Two pairs of small ocelli are General Morphology: Thick worms that are present on the prostomium (Fig. 2). rather wide for their length (Fig. 1). Anterior Appendages: Prostomium bears Body: More than 100 body segments are two small antennae and two massive palps normal for this species (Hartman 1968), the each with small styles. -
OREGON ESTUARINE INVERTEBRATES an Illustrated Guide to the Common and Important Invertebrate Animals
OREGON ESTUARINE INVERTEBRATES An Illustrated Guide to the Common and Important Invertebrate Animals By Paul Rudy, Jr. Lynn Hay Rudy Oregon Institute of Marine Biology University of Oregon Charleston, Oregon 97420 Contract No. 79-111 Project Officer Jay F. Watson U.S. Fish and Wildlife Service 500 N.E. Multnomah Street Portland, Oregon 97232 Performed for National Coastal Ecosystems Team Office of Biological Services Fish and Wildlife Service U.S. Department of Interior Washington, D.C. 20240 Table of Contents Introduction CNIDARIA Hydrozoa Aequorea aequorea ................................................................ 6 Obelia longissima .................................................................. 8 Polyorchis penicillatus 10 Tubularia crocea ................................................................. 12 Anthozoa Anthopleura artemisia ................................. 14 Anthopleura elegantissima .................................................. 16 Haliplanella luciae .................................................................. 18 Nematostella vectensis ......................................................... 20 Metridium senile .................................................................... 22 NEMERTEA Amphiporus imparispinosus ................................................ 24 Carinoma mutabilis ................................................................ 26 Cerebratulus californiensis .................................................. 28 Lineus ruber ......................................................................... -
The Namanereidinae (Polychaeta: Nereididae). Part 1, Taxonomy and Phylogeny
© Copyright Australian Museum, 1999 Records of the Australian Museum, Supplement 25 (1999). ISBN 0-7313-8856-9 The Namanereidinae (Polychaeta: Nereididae). Part 1, Taxonomy and Phylogeny CHRISTOPHER J. GLASBY National Institute for Water & Atmospheric Research, PO Box 14-901, Kilbirnie, Wellington, New Zealand [email protected] ABSTRACT. A cladistic analysis and taxonomic revision of the Namanereidinae (Nereididae: Polychaeta) is presented. The cladistic analysis utilising 39 morphological characters (76 apomorphic states) yielded 10,000 minimal-length trees and a highly unresolved Strict Consensus tree. However, monophyly of the Namanereidinae is supported and two clades are identified: Namalycastis containing 18 species and Namanereis containing 15 species. The monospecific genus Lycastoides, represented by L. alticola Johnson, is too poorly known to be included in the analysis. Classification of the subfamily is modified to reflect the phylogeny. Thus, Namalycastis includes large-bodied species having four pairs of tentacular cirri; autapomorphies include the presence of short, subconical antennae and enlarged, flattened and leaf-like posterior cirrophores. Namanereis includes smaller-bodied species having three or four pairs of tentacular cirri; autapomorphies include the absence of dorsal cirrophores, absence of notosetae and a tripartite pygidium. Cryptonereis Gibbs, Lycastella Feuerborn, Lycastilla Solís-Weiss & Espinasa and Lycastopsis Augener become junior synonyms of Namanereis. Thirty-six species are described, including seven new species of Namalycastis (N. arista n.sp., N. borealis n.sp., N. elobeyensis n.sp., N. intermedia n.sp., N. macroplatis n.sp., N. multiseta n.sp., N. nicoleae n.sp.), four new species of Namanereis (N. minuta n.sp., N. serratis n.sp., N. stocki n.sp., N. -
Polychaete Worms Definitions and Keys to the Orders, Families and Genera
THE POLYCHAETE WORMS DEFINITIONS AND KEYS TO THE ORDERS, FAMILIES AND GENERA THE POLYCHAETE WORMS Definitions and Keys to the Orders, Families and Genera By Kristian Fauchald NATURAL HISTORY MUSEUM OF LOS ANGELES COUNTY In Conjunction With THE ALLAN HANCOCK FOUNDATION UNIVERSITY OF SOUTHERN CALIFORNIA Science Series 28 February 3, 1977 TABLE OF CONTENTS PREFACE vii ACKNOWLEDGMENTS ix INTRODUCTION 1 CHARACTERS USED TO DEFINE HIGHER TAXA 2 CLASSIFICATION OF POLYCHAETES 7 ORDERS OF POLYCHAETES 9 KEY TO FAMILIES 9 ORDER ORBINIIDA 14 ORDER CTENODRILIDA 19 ORDER PSAMMODRILIDA 20 ORDER COSSURIDA 21 ORDER SPIONIDA 21 ORDER CAPITELLIDA 31 ORDER OPHELIIDA 41 ORDER PHYLLODOCIDA 45 ORDER AMPHINOMIDA 100 ORDER SPINTHERIDA 103 ORDER EUNICIDA 104 ORDER STERNASPIDA 114 ORDER OWENIIDA 114 ORDER FLABELLIGERIDA 115 ORDER FAUVELIOPSIDA 117 ORDER TEREBELLIDA 118 ORDER SABELLIDA 135 FIVE "ARCHIANNELIDAN" FAMILIES 152 GLOSSARY 156 LITERATURE CITED 161 INDEX 180 Preface THE STUDY of polychaetes used to be a leisurely I apologize to my fellow polychaete workers for occupation, practised calmly and slowly, and introducing a complex superstructure in a group which the presence of these worms hardly ever pene- so far has been remarkably innocent of such frills. A trated the consciousness of any but the small group great number of very sound partial schemes have been of invertebrate zoologists and phylogenetlcists inter- suggested from time to time. These have been only ested in annulated creatures. This is hardly the case partially considered. The discussion is complex enough any longer. without the inclusion of speculations as to how each Studies of marine benthos have demonstrated that author would have completed his or her scheme, pro- these animals may be wholly dominant both in num- vided that he or she had had the evidence and inclina- bers of species and in numbers of specimens. -
SPECIAL PUBLICATION 6 the Effects of Marine Debris Caused by the Great Japan Tsunami of 2011
PICES SPECIAL PUBLICATION 6 The Effects of Marine Debris Caused by the Great Japan Tsunami of 2011 Editors: Cathryn Clarke Murray, Thomas W. Therriault, Hideaki Maki, and Nancy Wallace Authors: Stephen Ambagis, Rebecca Barnard, Alexander Bychkov, Deborah A. Carlton, James T. Carlton, Miguel Castrence, Andrew Chang, John W. Chapman, Anne Chung, Kristine Davidson, Ruth DiMaria, Jonathan B. Geller, Reva Gillman, Jan Hafner, Gayle I. Hansen, Takeaki Hanyuda, Stacey Havard, Hirofumi Hinata, Vanessa Hodes, Atsuhiko Isobe, Shin’ichiro Kako, Masafumi Kamachi, Tomoya Kataoka, Hisatsugu Kato, Hiroshi Kawai, Erica Keppel, Kristen Larson, Lauran Liggan, Sandra Lindstrom, Sherry Lippiatt, Katrina Lohan, Amy MacFadyen, Hideaki Maki, Michelle Marraffini, Nikolai Maximenko, Megan I. McCuller, Amber Meadows, Jessica A. Miller, Kirsten Moy, Cathryn Clarke Murray, Brian Neilson, Jocelyn C. Nelson, Katherine Newcomer, Michio Otani, Gregory M. Ruiz, Danielle Scriven, Brian P. Steves, Thomas W. Therriault, Brianna Tracy, Nancy C. Treneman, Nancy Wallace, and Taichi Yonezawa. Technical Editor: Rosalie Rutka Please cite this publication as: The views expressed in this volume are those of the participating scientists. Contributions were edited for Clarke Murray, C., Therriault, T.W., Maki, H., and Wallace, N. brevity, relevance, language, and style and any errors that [Eds.] 2019. The Effects of Marine Debris Caused by the were introduced were done so inadvertently. Great Japan Tsunami of 2011, PICES Special Publication 6, 278 pp. Published by: Project Designer: North Pacific Marine Science Organization (PICES) Lori Waters, Waters Biomedical Communications c/o Institute of Ocean Sciences Victoria, BC, Canada P.O. Box 6000, Sidney, BC, Canada V8L 4B2 Feedback: www.pices.int Comments on this volume are welcome and can be sent This publication is based on a report submitted to the via email to: [email protected] Ministry of the Environment, Government of Japan, in June 2017. -
Complete Mitochondrial Genome of the Speckled Dace Rhinichthys Osculus, a Widely Distributed Cyprinid Minnow of Western North America
Bock. Published in Mitochondrial DNA Part A> DNA Mapping, Sequencing, and Analysis, 27(6), Oct. 21, 2015: 4416-4418 MITOGENOME ANNOUNCEMENT Complete mitochondrial genome of the speckled dace Rhinichthys osculus, a widely distributed cyprinid minnow of western North America Samantha L. Bock, Morgan M. Malley, and Sean C. Lema Department of Biological Sciences, Center for Coastal Marine Sciences, California Polytechnic State University, San Luis Obispo, CA, USA Abstract Keywords The speckled dace Rhinichthys osculus (order Cypriniformes), also known as the carpita pinta, is Cyprinidae, Cypriniformes, Leuciscinae, a small cyprinid minnow native to western North America. Here, we report the sequencing of mitogenome, mtDNA the full mitochondrial genome (mitogenome) of R. osculus from a male fish collected from the Amargosa River Canyon in eastern California, USA. The assembled mitogenome is 16 658 base pair (bp) nucleotides, and encodes 13 protein-coding genes, and includes both a 12S and a 16S rRNA, 22 tRNAs, and a 985 bp D-loop control region. Mitogenome synteny reflects that of other Ostariophysian fishes with the majority of genes and RNAs encoded on the heavy strand (H-strand) except nd6, tRNA-Gln, tRNA-Ala, tRNA-Asn, tRNA-Cys, tRNA-Tyr, tRNA-Ser, tRNA-Glu, and tRNA - Pro. The availability of this R. osculus mitochondrial genome – the first complete mitogenome within the lineage of Rhinichthys riffle daces – provides a foundation for resolving evolutionary relationships among morphologically differentiated populations of R. osculus. The speckled dace Rhinichthys osculus (Girard, 1856) is a small and Tissue Kit; Qiagen, Valencia, CA) and amplified (GoTaq® fish within the Leuciscinae subfamily of true minnows Long PCR Master Mix, Promega Corp., Madison, WI) using (Cyprinidae, Cypriniformes). -
Neanthes Brandti Class: Polychaeta Order: Phyllodocida a Clam Bed Worm Family: Nereididae
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by University of Oregon Scholars' Bank Phylum: Annelida Neanthes brandti Class: Polychaeta Order: Phyllodocida A clam bed worm Family: Nereididae Taxonomy: Neanthes brandti has been 2). The peristomium is apodous and placed in the genera Nereis and, most asetigerous. recently, Alitta. Depending on the author, Trunk: Thick segments that are wider Neanthes is currently considered a separate than they are long, gently tapers to or subspecies to the genus Nereis (Hilbig posterior (Fig. 1). 1997). The genus Alitta was originally Posterior: Pygidium bears two designated for the species, A. virens, based slender ventrolateral anal cirri (Fig. 1) on parapodial morphology. Later, A. brandti (Blake and Ruff 2007). was added to this genus. Although, most Parapodia: The first two setigers are authors regard Neanthes and Alitta as uniramous. All other parapodia are biramous synonyms, there is evidence to suggest that (Nereididae, Blake and Ruff 2007) where both Alitta is a monophyletic and a separate taxon notopodia and neuropodia have acicular to Neanthes (Bakken and Wilson 2005). lobes and each lobe bears 1–3 additional Currently, Neanthes brandti is the name seen lobes (above and below) called ligules (Blake in local intertidal guides (e.g., Blake and Ruff and Ruff 2007). The posterior notopodial 2007), but this name could change to Alitta lobes broadly expanded and leaf-like. All brandti in the near future. Furthermore, N. other lobes are small (Fig. 6). Dorsal cirri are brandti is one of three species in a closely short and inserted halfway along dorsal related cryptic species complex which has (notopodial) lobe, while ventral cirri are been suggested to be not three, but the inserted at the base of the neuropodial lobe single, widely distributed species – N. -
ABSTRACT a Study of the Life History of a Population of Nereis Virensat
· '.' -\ ABSTRACT A study of the life history of a population of Nereis virensat Brandy Cove, St. Andrews, New Brunswick, indica-6es that these worms may live for 12-15 years, maturing at the earliest in their fourth year. The majority, however, do not mature until their fifth or sixth year. At the onset of maturity 'gonadal' clumps are found either floating free in the coelom or embedded in the parenchymal tissue at the bases of the parapodia. Eggs were observed to arise froIn these 'gonadal' clumps during every month of theyear and took 1-2 years to mature. 'Sperm plates' were only produced froID 'gonadal' clUlnps at the end of July to the beginning of' August and mature sperrn \'lere observed by the follovIing May. The ratio of males: females in the spawning population was found to be 3:1. It was also observed that this population did not undergo extensive epi tol;:al metamorphosis and that the worms "l:;herefore spawned in an atokous .condi tian. These worms did no-t; show an extensive swarming behaviour at the sea surface p in fact only the males were observed swimrning close to the surface of the mud p on the incomming tide, releasing a continuous stream of sperm froIn thelr pygidial papillae. What the females do in the field i8 still uncertain. Larval develop ment followed very closely that described for other nereids an0. was observed to be non-pelagic. · ",' History of Nereis virens at Brandy Cove, St. Andrews, N.B. Doreen Snow ',\ Some Aspects of the Life History of the Nereid Worm. -
Development of Microsatellite Markers in Pungtungia Herzi Using Next-Generation Sequencing and Cross-Species Amplification in the Genus Pseudopungtungia
Int. J. Mol. Sci. 2013, 14, 19923-19931; doi:10.3390/ijms141019923 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article Development of Microsatellite Markers in Pungtungia herzi Using Next-Generation Sequencing and Cross-Species Amplification in the Genus Pseudopungtungia Young-Eun Yun 1, Jeong-Nam Yu 1, Sang Ki Kim 2, Ui Wook Hwang 2,3 and Myounghai Kwak 1,* 1 National Institute of Biological Resources, Incheon 404-708, Korea; E-Mails: [email protected] (Y.-E.Y.); [email protected] (J.-N.Y.) 2 School of Life Science, Kyungpook National University, Daegu 702-701, Korea; E-Mails: [email protected] (S.K.K.); [email protected] (U.W.H.) 3 Department of Biology, Teachers College & Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu 702-701, Korea * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +82-32-590-7186; Fax: +82-32-590-7230. Received: 1 June 2013; in revised form: 10 July 2013 / Accepted: 18 September 2013 / Published: 1 October 2013 Abstract: Nuclear microsatellite markers for Pungtungia herzi were developed using a combination of next-generation sequencing and Sanger sequencing. One hundred primer sets in the flanking region of dinucleotide and trinucleotide repeat motifs were designed and tested for efficiency in polymerase chain reaction amplification. Of these primer sets, 16 new markers (16%) were successfully amplified with unambiguous polymorphic alleles in 16 individuals of Pungtungia herzi. Cross-species amplification with these markers was then examined in two related species, Pseudopungtungia nigra and Pseudopungtungia tenuicorpa. -
Dependent Outcomes in a Reproductive Mutualism Between Two Freshwater fish Species Brandon K
Context-dependent outcomes in a reproductive mutualism between two freshwater fish species Brandon K. Peoples & Emmanuel A. Frimpong Department of Fish and Wildlife Conservation, Virginia Polytechnic Institute and State University, 100 Cheatham Hall, Blacksburg, Virginia 24061 Keywords Abstract Biotic interaction, context, fish, freshwater, 1 mutualism, nest association, Nocomis, The development of encompassing general models of ecology is precluded by stream, vertebrate. underrepresentation of certain taxa and systems. Models predicting context- dependent outcomes of biotic interactions have been tested using plants and Correspondence bacteria, but their applicability to higher taxa is largely unknown. Emmanuel A. Frimpong, Department of Fish 2 We examined context dependency in a reproductive mutualism between two and Wildlife Conservation, Virginia stream fish species: mound nest-building bluehead chub Nocomis lepto- Polytechnic Institute and State University, 100 cephalus and mountain redbelly dace Chrosomus oreas, which often uses Cheatham Hall, Blacksburg, VA 24061. Tel: 540 231 6880; N. leptocephalus nests for spawning. We hypothesized that increased predator Fax: 540 231 7580; density and decreased substrate availability would increase the propensity of E-mail: [email protected] C. oreas to associate with N. leptocephalus and decrease reproductive success of both species. Funding Information 3 In a large-scale in situ experiment, we manipulated egg predator density and This work was funded by National Science presence of both symbionts (biotic context), and replicated the experiment Foundation DEB Award #1120629 to EAF. in habitats containing high- and low-quality spawning substrate (abiotic Received: 20 October 2015; Revised: 4 context). January 2016; Accepted: 5 January 2016 4 Contradictory to our first hypothesis, we observed that C.