Dependent Outcomes in a Reproductive Mutualism Between Two Freshwater fish Species Brandon K
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Complete Mitochondrial Genome of the Speckled Dace Rhinichthys Osculus, a Widely Distributed Cyprinid Minnow of Western North America
Bock. Published in Mitochondrial DNA Part A> DNA Mapping, Sequencing, and Analysis, 27(6), Oct. 21, 2015: 4416-4418 MITOGENOME ANNOUNCEMENT Complete mitochondrial genome of the speckled dace Rhinichthys osculus, a widely distributed cyprinid minnow of western North America Samantha L. Bock, Morgan M. Malley, and Sean C. Lema Department of Biological Sciences, Center for Coastal Marine Sciences, California Polytechnic State University, San Luis Obispo, CA, USA Abstract Keywords The speckled dace Rhinichthys osculus (order Cypriniformes), also known as the carpita pinta, is Cyprinidae, Cypriniformes, Leuciscinae, a small cyprinid minnow native to western North America. Here, we report the sequencing of mitogenome, mtDNA the full mitochondrial genome (mitogenome) of R. osculus from a male fish collected from the Amargosa River Canyon in eastern California, USA. The assembled mitogenome is 16 658 base pair (bp) nucleotides, and encodes 13 protein-coding genes, and includes both a 12S and a 16S rRNA, 22 tRNAs, and a 985 bp D-loop control region. Mitogenome synteny reflects that of other Ostariophysian fishes with the majority of genes and RNAs encoded on the heavy strand (H-strand) except nd6, tRNA-Gln, tRNA-Ala, tRNA-Asn, tRNA-Cys, tRNA-Tyr, tRNA-Ser, tRNA-Glu, and tRNA - Pro. The availability of this R. osculus mitochondrial genome – the first complete mitogenome within the lineage of Rhinichthys riffle daces – provides a foundation for resolving evolutionary relationships among morphologically differentiated populations of R. osculus. The speckled dace Rhinichthys osculus (Girard, 1856) is a small and Tissue Kit; Qiagen, Valencia, CA) and amplified (GoTaq® fish within the Leuciscinae subfamily of true minnows Long PCR Master Mix, Promega Corp., Madison, WI) using (Cyprinidae, Cypriniformes). -
Development of Microsatellite Markers in Pungtungia Herzi Using Next-Generation Sequencing and Cross-Species Amplification in the Genus Pseudopungtungia
Int. J. Mol. Sci. 2013, 14, 19923-19931; doi:10.3390/ijms141019923 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article Development of Microsatellite Markers in Pungtungia herzi Using Next-Generation Sequencing and Cross-Species Amplification in the Genus Pseudopungtungia Young-Eun Yun 1, Jeong-Nam Yu 1, Sang Ki Kim 2, Ui Wook Hwang 2,3 and Myounghai Kwak 1,* 1 National Institute of Biological Resources, Incheon 404-708, Korea; E-Mails: [email protected] (Y.-E.Y.); [email protected] (J.-N.Y.) 2 School of Life Science, Kyungpook National University, Daegu 702-701, Korea; E-Mails: [email protected] (S.K.K.); [email protected] (U.W.H.) 3 Department of Biology, Teachers College & Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu 702-701, Korea * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +82-32-590-7186; Fax: +82-32-590-7230. Received: 1 June 2013; in revised form: 10 July 2013 / Accepted: 18 September 2013 / Published: 1 October 2013 Abstract: Nuclear microsatellite markers for Pungtungia herzi were developed using a combination of next-generation sequencing and Sanger sequencing. One hundred primer sets in the flanking region of dinucleotide and trinucleotide repeat motifs were designed and tested for efficiency in polymerase chain reaction amplification. Of these primer sets, 16 new markers (16%) were successfully amplified with unambiguous polymorphic alleles in 16 individuals of Pungtungia herzi. Cross-species amplification with these markers was then examined in two related species, Pseudopungtungia nigra and Pseudopungtungia tenuicorpa. -
Korea DMZ Biosphere Reserve Nomination
Nomination Submission from the Republic of Korea for the KOREA DMZ BIOSPHERE RESERVE September 2011 TABLE OF CONTENTS PartⅠ: SUMMARY 1. PROPOSED NAME OF THE BIOSPHERE RESERVE ............................................. 1 2. COUNTRY ................................................................................................................ 1 3. FULFILLMENT OF THE THREE FUNCTIONS OF BIOSPHERE RESERVES ......... 1 3.1. Conservation................................................................................................................... 2 3.2. Development .................................................................................................................. 3 3.3. Logistic support .............................................................................................................. 5 4. CRITERIA FOR DESIGNATION AS A BIOSPHERERESERVE ................................ 7 4.1. "Encompass a mosaic of ecological systems representative of major biogeographic regions, including a gradation of human intervention" ................................................. 7 4.2. "Be of significance for biological diversity conservation" ............................................. 7 4.3. "Provide an opportunity to explore and demonstrate approaches to sustainable development on a regional scale" .................................................................................. 8 4.4. "Have an appropriate size to serve the three functions of biosphere reserves" .............. 8 4.5. Through appropriate zonation ....................................................................................... -
Seung-Ho BAEK 1, 2, Sang-Hyeon PARK 1, 3, Jeong-Suk MOON 4, and Jeong-Hui KIM*1
ACTA ICHTHYOLOGICA ET PISCATORIA (2020) 50 (2): 215–217 DOI: 10.3750/AIEP/02850 LENGTH–WEIGHT RELATIONS FOR 16 FRESHWATER FISH SPECIES (ACTINOPTERYGII: CYPRINIFORMES: CYPRINIDAE) IN THE HAN RIVER, SOUTH KOREA Seung-Ho BAEK 1, 2, Sang-Hyeon PARK 1, 3, Jeong-Suk MOON 4, and Jeong-Hui KIM *1 1 EcoResearch incorporated, Gongju, South Korea 2 Department of Environmental Engineering, Chungbuk National University, Cheongju, South Korea 3 Department of Marine Fisheries Resources, Mokpo National University, Mokpo, South Korea 4 National Institute of Environmental Research, Incheon, South Korea Baek S.-H., Park S.-H., Moon J.-S., Kim J.-H. 2020. Length–weight relations for 16 freshwater fish species in the Han River, South Korea. Acta Ichthyol. Piscat. 50 (2): 215–217. Abstract. Length–weight relations (LWRs) for 16 freshwater fish collected from June to October 2018 in the Han River, South Korea, were estimated. The following species, representing the family Cyprinidae, were studied: Abbottina rivularis (Basilewsky, 1855); Acanthorhodeus chankaensis (Dybowski, 1872); Tanakia lanceolata (Temminck et Schlegel, 1846); Acheilognathus rhombeus (Temminck et Schlegel, 1846); Acheilognathus yamatsutae Mori, 1928; Carassius auratus (Linnaeus, 1758); Chanodichthys erythropterus (Basilewsky, 1855); Gnathopogon strigatus (Regan, 1908); Hemibarbus labeo (Pallas, 1776); Pseudogobio esocinus (Temminck et Schlegel, 1846); Pseudorasbora parva (Temminck et Schlegel, 1846); Pungtungia herzi Herzenstein, 1892; Sarcocheilichthys nigripinnis (Günther, 1873); Squalidus chankaensis Dybowski, 1872; Squalidus japonicus (Sauvage, 1883); Opsariichthys uncirostris (Temminck et Schlegel, 1846). The values of parameter b for all species were within the expected 2.5–3.5 range according to Froese (2006). The LWRs data for two species in this study, Acheilognathus rhombeus and Gnathopogon strigatus, were not previously available in FishBase. -
Thesis Submitted for the Degree of Ph.D
THE UNIVERSITY OF HULL MATE CHOICE IN THE POLYCHAETE NEREIS ACUMINATA: THE ROLE OF AGGRESSION AND PARENTAL EXPERIENCE. being a thesis submitted for the Degree of Ph.D. in the University of Hull by Ellen Julia Storey B.Sc. M.Sc. June, 2010 Contents Page Tables and Figures 4 Acknowledgements 6 Abstract 7 Chapter One: Literature Review 9 1.1 Research rationale 10 1.2 Annelid polychaetes 12 1.3 The experimental species and previous research 13 1.4 Laboratory populations and culture conditions 25 1.5 Aims 32 Chapter two: Aggression and pairing behaviour in N. acuminata 37 2.1 Experimental reasoning and aims 38 2.1.1 Aggression in sexually mature and spent females 39 2.1.2 The effect of male aggression on pair formation 40 2.1.3 The effect of previous aggression between males on subsequent interactions 43 2.2 Methodology 45 2.2.1 Aggression in sexually mature and spent females 45 2.2.2 The effect of male aggression on pair formation 46 2.2.3 The effect of previous aggression between males on subsequent interactions 46 2.3 Results 48 2.3.1 Aggression in sexually mature and spent females 48 2.3.2 The effect of male aggression on pair formation 49 2.3.3 The effect of previous aggression between males on subsequent interactions 50 2.4 Discussion 51 2.4.1 Aggression in sexually mature and spent females 51 2.4.2 The effect of male aggression on pair formation 52 2.4.3 The effect of previous aggression between males on subsequent interactions 53 2.4.4 Next steps 54 Chapter three: Intrasexual aggression between populations of Nereis acuminata 55 3.1 -
Species and Subject Index*
Environmental Biology of Fishes 52: 395-405, 1998. Species and subject index* 5th International Congress of Ecology Hypomesus pretiosus japonicus 218, migration 299-302 (INTECOL '90) 28 220-221 Sr/Ca ratios in otoliths 299-302 Abboltina rivularis (Chinese false at maturity of Coitus nozawae Anguilla marmorata (marbled eel, 00- gudgeon, tsuchifuki) 120 208-209 unagi) 120, 140-142, 146-147 Abe, Takuya 28-29 ajime-dojou see Niwaella delicata Anguilla mossambica 140-141, 146-147 abura-bote see Tanakia limbata aka-bouzu-haze see Sicyopus Anguilla reinhardti 140-142, 146-147 abura-haya see Phoxinus lagowski zosterophorum Anguilla rostrata 140-147 steindachneri aka-hire-tabira see Acheilognathus tabira Anguilla spp. 139-147 abura-higai see Sarcocheilichthys subsp.l evolution of freshwater eels 139-147 biwaensis akaza see Liobagrus reini geographic distribution of freshwater Acanthaster planci (crown-of-thorns Alcichthys alcicornis 185 eels 140 starfish) 82 allozyme analysis in Lethenteron 151-161 leptocephali larvae 139, 142-143 Acanthopagrus schlegele 184-185 electrophoresis in Cyprinids 174-178 phylogenetic relationships of Acheilognathus cyanostigma (striped Alosa sapidissima (American shad) 203 freshwater eels 140-142 bi tterling, ichimonii -tanago) 121 alpheid shrimp 126, 131 speciation and dispersal of Acheilognathus longipinnis (deep bodied Altolamprologus compressiceps 278, freshwater eels 142-146 bitterling, ita-sen-para) 103, 121 372-377 zoogeography of freshwater eels Acheilognathus melanogaster am ago see Oncorhynchus masou 143-145 (broad striped bitterling, tanago) 121, ishikawae Ankei, Yuji 24 174-178 Ambassis miops (sesuji-takasago Anthias squamipinnis 126 Acheilognathus rhombeus (flat bitterling, ishimochi) 123 aobara-yoshinobori see Rhinogobius sp. kanehira) 121,174-175 Ambassis urotaenia (takasago-ishimochi) blue belly BB Acheilognathus spp. -
Parental-Care Parasitism: How Do Unrelated Offspring Attain Acceptance by Foster Parents?
Behavioral Ecology doi:10.1093/beheco/arr041 Advance Access publication 26 April 2011 Forum: Invited Review Parental-care parasitism: how do unrelated offspring attain acceptance by foster parents? Marı´a Rolda´n and Manuel Soler Departamento de Biologı´a Animal, Facultad de Ciencias, Universidad de Granada, Severo Ochoa s/n, E-18071 Granada, Spain Downloaded from https://academic.oup.com/beheco/article/22/4/679/296943 by guest on 01 October 2021 In this review, we describe a new term, ‘‘parental-care parasitism’’, that we define as the interaction in which an individual (the parasite) obtains reproductive benefits while reducing or completely eliminating its own costs of parenting by exploiting any type of offspring care provided by other individuals (the hosts). Parental-care parasitism comprises parasitic behaviors ranging from interactions in which just the nest is taken over to those where various combinations of nest, food and offspring care are parasitized. We subdivide parental-care parasitism into 3 categories depending on the strategy used by the parasite to reach host nest: 1) the parasite approaches the nest during host absence, 2) parasite and host adults meet at the nest but no aggression is carried out, or 3) the host tries to evict the parasite at the nest. We also discuss the costs and benefits for both parents and offspring, as well as for hosts and parasites, placing different forms of parental-care parasitism in an evolutionary context within the frameworks of both parental investment theory and coevolutionary arms race theory. Herein, we thoroughly discuss the lack of offspring discrimination found in some species, some populations of the same species and some individuals within the same population on the basis of the coevolutionary arms race theory, and the fact that unrelated offspring attain acceptance by foster parents, contrary to the general predictions of parental investment theory. -
Identification of Invasive Alien Species Using DNA Barcodes
Identification of Invasive Alien Species using DNA barcodes Royal Belgian Institute of Natural Sciences Royal Museum for Central Africa Rue Vautier 29, Leuvensesteenweg 13, 1000 Brussels , Belgium 3080 Tervuren, Belgium +32 (0)2 627 41 23 +32 (0)2 769 58 54 General introduction to this factsheet The Barcoding Facility for Organisms and Tissues of Policy Concern (BopCo) aims at developing an expertise forum to facilitate the identification of biological samples of policy concern in Belgium and Europe. The project represents part of the Belgian federal contribution to the European Research Infrastructure Consortium LifeWatch. Non-native species which are being introduced into Europe, whether by accident or deliberately, can be of policy concern since some of them can reproduce and disperse rapidly in a new territory, establish viable populations and even outcompete native species. As a consequence of their presence, natural and managed ecosystems can be disrupted, crops and livestock affected, and vector-borne diseases or parasites might be introduced, impacting human health and socio-economic activities. Non-native species causing such adverse effects are called Invasive Alien Species (IAS). In order to protect native biodiversity and ecosystems, and to mitigate the potential impact on human health and socio-economic activities, the issue of IAS is tackled in Europe by EU Regulation 1143/2014 of the European Parliament and Council. The IAS Regulation provides for a set of measures to be taken across all member states. The list of Invasive Alien Species of Union Concern is regularly updated. In order to implement the proposed actions, however, methods for accurate species identification are required when suspicious biological material is encountered. -
Phylogenetic Relationships of Pseudorasbora, Pseudopungtungia,Andpungtungia (Teleostei; Cypriniformes; Gobioninae) Inferred from Multiple Nuclear Gene Sequences
Hindawi Publishing Corporation BioMed Research International Volume 2013, Article ID 347242, 6 pages http://dx.doi.org/10.1155/2013/347242 Research Article Phylogenetic Relationships of Pseudorasbora, Pseudopungtungia,andPungtungia (Teleostei; Cypriniformes; Gobioninae) Inferred from Multiple Nuclear Gene Sequences Keun-Yong Kim,1 Myeong-Hun Ko,2 Huanzhang Liu,3 Qiongying Tang,3 Xianglin Chen,4 Jun-Ichi Miyazaki,5 and In-Chul Bang2 1 Department of Research and Development, NLP Co., Ltd., Busan 619-912, Republic of Korea 2 Department of Life Sciences & Biotechnology, Soonchunhyang University, Asan 336-745, Republic of Korea 3 Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China 4 School of Life Science, South China Normal University, Guangzhou 510631, China 5 Faculty of Education and Human Sciences, University of Yamanashi, Yamanashi 400-8510, Japan Correspondence should be addressed to In-Chul Bang; [email protected] Received 1 March 2013; Accepted 7 August 2013 Academic Editor: William Piel Copyright © 2013 Keun-Yong Kim et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Gobionine species belonging to the genera Pseudorasbora, Pseudopungtungia,andPungtungia (Teleostei; Cypriniformes; Cyprinidae) have been heavily studied because of problems on taxonomy, threats of extinction, invasion, and human health. Nucleotide sequences of three nuclear genes, that is, recombination activating protein gene 1 (rag1), recombination activating gene 2 (rag2), and early growth response 1 gene (egr1), from Pseudorasbora, Pseudopungtungia,andPungtungia species residing in China, Japan, and Korea, were analyzed to elucidate their intergeneric and interspecific phylogenetic relationships. -
Cypriniformes: Cyprinidae)
Original Article http://e-fas.org Fish Aquat Sci 18(1), 99-107, 2015 A Natural Hybrid of Intergeneric Mating between a Female Pungtungia herzi and a Male Pseudorasbora parva (Cypriniformes: Cyprinidae) Keun-Yong Kim1, Myeong-Hun Ko2, Sung Jang Cho3, Woo-Jin Kim4, Min Ho Son1 and In-Chul Bang5* 1Marine Eco-technology Institute, Co., Ltd, Busan 608-830, Korea 2Division of EcoScience, Ewha Womans University, Seoul 120-750, Korea 3Boryeong Freshwater Ecology Center, Boryeong 355-923, Korea 4Biotechnology Research Center, National Fisheries Research and Development Institute, Busan 619-902, Korea 5Department of Life Science and Biotechnology, Soonchunhyang University, Asan 336-745, Korea Abstract A natural hybrid of a probable intergeneric mating between the striped shiner Pungtungia herzi and the stone morocco Pseudo- rasbora parva (Cypriniformes: Cyprinidae) was captured in the Geumho River, a tributary of the Nakdong River basin in Korea. Morphological characters and DNA sequences were analyzed to verify its hybrid state and identify the parentage of its parent species. The hybrid exhibited a phenotypic intermediacy between the two parent species in the number of vertebrae and the mouth shape. Out of 1,488 base pair (bp) positions of the nuclear recombination activating gene 1 gene (rag1), which has a biparental mode of inheritance, 41-bp substitutions were detected between the two parent species, whereas an electropherogram of the hybrid displayed polymorphic double peaks at all of the base positions, along with one additional one, strongly indicating its hybrid state. Meanwhile, sequence comparison of the mitochondrial cytochrome b gene (mt-cyb) (1,140 bp), which has a maternal mode of in- heritance, showed only 5–22-bp differences (97.6–99.5% identities) between the hybrid and Pu. -
Rhodeus Amarus), a fish That Parasitizes Freshwater Mussels
Molecular Ecology (2011) 20, 3631–3643 doi: 10.1111/j.1365-294X.2011.05198.x No evidence for host specialization or host-race formation in the European bitterling (Rhodeus amarus), a fish that parasitizes freshwater mussels M. REICHARD,*† J. BRYJA,* M. POLACˇ IK* and C. SMITH† *Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Kveˇtna´ 8, 603 65 Brno, Czech Republic, †School of Biology, University of St Andrews, St Andrews, Fife KY16 8LB, UK Abstract Coevolutionary relationships between parasites and hosts can elevate the rate of evolutionary changes owing to reciprocal adaptations between coevolving partners. Such relationships can result in the evolution of host specificity. Recent methodological advances have permitted the recognition of cryptic lineages, with important conse- quences for our understanding of biological diversity. We used the European bitterling (Rhodeus amarus), a freshwater fish that parasitizes unionid mussels, to investigate host specialization across regions of recent and ancient sympatry between coevolving partners. We combined genetic data (12 microsatellite and 2 mitochondrial markers) from five populations with experimental data for possible mechanisms of host species recognition (imprinting and conditioning). We found no strong evidence for the existence of cryptic lineages in R. amarus, though a small proportion of variation among individuals in an area of recent bitterling–mussel association was statistically significant in explaining host specificity. No other measures supported the existence of host-specific lineages. Behavioural data revealed a weak effect of conditioning that biased behavioural preferences towards specific host species. Host imprinting had no effect on oviposition behaviour. Overall, we established that populations of R. -
Characterization and Pilot Application of 14
Animal Cells and Systems Vol. 16, No. 3, June 2012, 224Á229 Characterization and pilot application of 14 microsatellite loci from the Korean shiner (Coreoleuciscus splendidus) Sang Ki Kima, Ji Jung Kimb, Shi Hyun Ryua, Ho Young Sukb* and Ui Wook Hwanga* aDepartment of Biology, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu 702-701, Korea; bDepartment of Life Sciences, Yeungnam University, Gyeongsan Gyeongsangbuk-do 712-749, Korea (Received 19 May 2011; received in revised form 11 November 2011; accepted 29 November 2011) The Korean shiner (Coreoleuciscus splendidus, Gobioninae), a small freshwater fish native to Korea Peninsula, widely inhabits in most of the major drainages in South Korea. Here we describe the development of 14 novel and polymorphic microsatellites for this species and its effective utilization in estimation of genetic diversity using 72 individuals from three sampling sites in different drainages. Loci were isolated from a microsatellite enrichment procedure using probe-labeled magnetic beads. A total of 242 alleles were detected across all loci with an average of 17.3 alleles per locus ranging 4Á32. The loci varied levels of polymorphism as evident from its expected heterozygosity ranging from 0.111 to 0.957. The average pairwise FST between two populations examined shows significant differentiation (FST 0.215, p B0.05). The 14 microsatellite loci developed here will also be useful to explain for the genetic structures among geographically isolated populations and gene flow dynamics within drainages in this species as well as the closely related species. Keywords: microsatellites; Korean shiner; Coreoleuciscus splendidus; molecular markers; Gobioninae Introduction historical/contemporary dispersal and population ge- The Korean shiner (Coreoleuciscus splendidus, Gobio- netic structure (e.g.