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Cyprinus Carpio
Académie Universitaire Wallonie - Europe Université de Liège Faculté de Médecine Vétérinaire Département des Maladies Infectieuses et Parasitaires Service d’Immunologie et de Vaccinologie Etude des portes d’entrée de l’Herpèsvirus cyprin 3 chez Cyprinus carpio Study of the portals of entry of Cyprinid herpesvirus 3 in Cyprinus carpio Guillaume FOURNIER Thèse présentée en vue de l’obtention du grade de Docteur en Sciences Vétérinaires Année académique 2011-2012 Académie Universitaire Wallonie - Europe Université de Liège Faculté de Médecine Vétérinaire Département des Maladies Infectieuses et Parasitaires Service d’Immunologie et de Vaccinologie Etude des portes d’entrée de l’Herpèsvirus cyprin 3 chez Cyprinus carpio Study of the portals of entry of Cyprinid herpesvirus 3 in Cyprinus carpio Promoteur : Prof. Alain Vanderplasschen Guillaume FOURNIER Thèse présentée en vue de l’obtention du grade de Docteur en Sciences Vétérinaires Année académique 2011-2012 « La science progresse en indiquant l'immensité de l'ignoré. » Louis Pauwels Remerciements Liège, le 15 février 2012 L’accomplissement d’une thèse est un long et palpitant voyage en océan où se mélangent la curiosité, le doute, la persévérance, et la confiance… en soi bien sûr, mais surtout envers toutes les personnes qui, par leurs conseils, leur aide, leur soutien m’ont permis de mener cette thèse à bien. Je tiens ici à remercier mes collègues, amis et famille qui ont été tantôt les phares, tantôt les boussoles, toujours les fidèles compagnons de cette aventure. Je commencerais par adresser mes plus sincères remerciements à mon promoteur, le Professeur Alain Vanderplasschen, qui m’avait déjà remarqué en amphithéâtre pour ma curiosité, à moins que ce ne soit pour mon irrésistible coiffure.. -
(12) Patent Application Publication (10) Pub. No.: US 2012/0009150 A1 WEBER Et Al
US 2012O009 150A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2012/0009150 A1 WEBER et al. (43) Pub. Date: Jan. 12, 2012 (54) DIARYLUREAS FORTREATINGVIRUS Publication Classification INFECTIONS (51) Int. Cl. (76) Inventors: Olaf WEBER, Wulfrath (DE); st 2. CR Bernd Riedl, Wuppertal (DE) ( .01) A63/675 (2006.01) (21) Appl. No.: 13/236,865 A6II 3/522 (2006.01) A6IP 29/00 (2006.01) (22) Filed: Sep. 20, 2011 A6II 3/662 (2006.01) A638/14 (2006.01) Related U.S. Application Data A63L/7056 (2006.01) A6IP3L/2 (2006.01) (63) Continuation of application No. 12/097.350. filed on A6II 3/44 (2006.01) Nov. 3, 2008, filed as application No. PCTAEPO6/ A6II 3/52 (2006.01) 11693 on Dec. 6, 2006. O O (52) U.S. Cl. .......... 424/85.6; 514/350; 514/171; 514/81; (30) Foreign Application Priority Data 514/263.38: 514/263.4: 514/120: 514/4.3: Dec. 15, 2005 (EP) .................................. 05O274513 424/85.7; 514/43 Dec. 15, 2005 (EP). ... O5O27452.1 Dec. 15, 2005 (EP). ... O5O27456.2 Dec. 15, 2005 (EP). ... O5O27458.8 The present invention relates to pharmaceutical compositions Dec. 15, 2005 (EP) O5O27.460.4 for treating virus infections and/or diseases caused by virus Dec. 15, 2005 (EP) O5O27462.O infections comprising at least a diary1 urea compound option Dec. 15, 2005 (EP). ... O5O27465.3 ally combined with at least one additional therapeutic agent. Dec. 15, 2005 (EP). ... O5O274.67.9 Useful combinations include e.g. BAY 43-9006 as a diaryl Dec. -
Joseph G. Sinkovics RNA/DNA and Cancer RNA/DNA and Cancer Joseph G
Joseph G. Sinkovics RNA/DNA and Cancer RNA/DNA and Cancer Joseph G. Sinkovics RNA/DNA and Cancer 123 Joseph G. Sinkovics Retired Professor, M.D. Anderson Hospital Comprehensive Cancer Center The University of Texas Houston, TX USA Retired External Professor and Honorary Member H.L. Moffitt Comprehensive Cancer Center The University of South Florida Tampa, FL USA External Professor, Department of Molecular Medicine The University of South Florida Morsani College of Medicine Tampa, FL USA Retired Medical Director; Senior Scientific Medical Advisor, The Cancer Institute St. Joseph’s Hospital Tampa, FL USA ISBN 978-3-319-22278-3 ISBN 978-3-319-22279-0 (eBook) DOI 10.1007/978-3-319-22279-0 Library of Congress Control Number: 2015946582 Springer Cham Heidelberg New York Dordrecht London © Springer International Publishing Switzerland 2016 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. -
2008.018- Code(S) Assigned: (To Be Completed by ICTV Officers) 22V
Taxonomic proposal to the ICTV Executive Committee This form should be used for all taxonomic proposals. Please complete all those modules that are applicable (and then delete the unwanted sections). 2008.018- Code(s) assigned: (to be completed by ICTV officers) 22V Short title: 2 species in new genus Batrachovirus (e.g. 6 new species in the genus Zetavirus; re-classification of the family Zetaviridae etc.) Modules attached 1 2 3 4 5 (please check all that apply): 6 7 Author(s) with e-mail address(es) of the proposer: Herpesvirales Study Group; P. Pellett, Chair; [email protected] ICTV-EC or Study Group comments and response of the proposer: Page 1 of 6 Taxonomic proposal to the ICTV Executive Committee MODULE 4: NEW GENUS (if more than one genus is to be created, please complete additional copies of this section) Code 2008.018V (assigned by ICTV officers) To create a new genus assigned as follows: Subfamily: Fill in all that apply. Ideally, a genus should be placed within a higher taxon, Family: Alloherpesviridae but if not put “unassigned” here. Order: Herpesvirales Code 2008.019V (assigned by ICTV officers) To name the new genus: Batrachovirus Code 2008.020V (assigned by ICTV officers) To assign the following as species in the new genus: You may list several species here. For each species, please state whether it is new or existing. If the species is new, please complete Module 5 to create it. If the species already exists, please state whether it is unassigned or is to be removed from another genus and, if the latter, complete module 6(a) to ‘REMOVE’ it from that genus. -
Wednesday Slide Conference 2008-2009
PROCEEDINGS DEPARTMENT OF VETERINARY PATHOLOGY WEDNESDAY SLIDE CONFERENCE 2008-2009 ARMED FORCES INSTITUTE OF PATHOLOGY WASHINGTON, D.C. 20306-6000 2009 ML2009 Armed Forces Institute of Pathology Department of Veterinary Pathology WEDNESDAY SLIDE CONFERENCE 2008-2009 100 Cases 100 Histopathology Slides 249 Images PROCEEDINGS PREPARED BY: Todd Bell, DVM Chief Editor: Todd O. Johnson, DVM, Diplomate ACVP Copy Editor: Sean Hahn Layout and Copy Editor: Fran Card WSC Online Management and Design Scott Shaffer ARMED FORCES INSTITUTE OF PATHOLOGY Washington, D.C. 20306-6000 2009 ML2009 i PREFACE The Armed Forces Institute of Pathology, Department of Veterinary Pathology has conducted a weekly slide conference during the resident training year since 12 November 1953. This ever- changing educational endeavor has evolved into the annual Wednesday Slide Conference program in which cases are presented on 25 Wednesdays throughout the academic year and distributed to 135 contributing military and civilian institutions from around the world. Many of these institutions provide structured veterinary pathology resident training programs. During the course of the training year, histopathology slides, digital images, and histories from selected cases are distributed to the participating institutions and to the Department of Veterinary Pathology at the AFIP. Following the conferences, the case diagnoses, comments, and reference listings are posted online to all participants. This study set has been assembled in an effort to make Wednesday Slide Conference materials available to a wider circle of interested pathologists and scientists, and to further the education of veterinary pathologists and residents-in-training. The number of histopathology slides that can be reproduced from smaller lesions requires us to limit the number of participating institutions. -
Downloaded from Transcriptome Shotgun Assembly (TSA) Database on 29 November 2020 (Ftp://Ftp.Ddbj.Nig.Ac.Jp/Ddbj Database/Tsa/, Table S3)
viruses Article Discovery and Characterization of Actively Replicating DNA and Retro-Transcribing Viruses in Lower Vertebrate Hosts Based on RNA Sequencing Xin-Xin Chen, Wei-Chen Wu and Mang Shi * School of Medicine, Sun Yat-sen University, Shenzhen 518107, China; [email protected] (X.-X.C.); [email protected] (W.-C.W.) * Correspondence: [email protected] Abstract: In a previous study, a metatranscriptomics survey of RNA viruses in several important lower vertebrate host groups revealed huge viral diversity, transforming the understanding of the evolution of vertebrate-associated RNA virus groups. However, the diversity of the DNA and retro-transcribing viruses in these host groups was left uncharacterized. Given that RNA sequencing is capable of revealing viruses undergoing active transcription and replication, we collected previously generated datasets associated with lower vertebrate hosts, and searched them for DNA and retro-transcribing viruses. Our results revealed the complete genome, or “core gene sets”, of 18 vertebrate-associated DNA and retro-transcribing viruses in cartilaginous fishes, ray- finned fishes, and amphibians, many of which had high abundance levels, and some of which showed systemic infections in multiple organs, suggesting active transcription or acute infection within the host. Furthermore, these new findings recharacterized the evolutionary history in the families Hepadnaviridae, Papillomaviridae, and Alloherpesviridae, confirming long-term virus–host codivergence relationships for these virus groups. -
(Bufo Bufo) in Switzerland Published: Xx Xx Xxxx Francesco C
www.nature.com/scientificreports OPEN Bufonid herpesvirus 1 (BfHV1) associated dermatitis and mortality in free ranging common toads Received: 19 January 2018 Accepted: 17 September 2018 (Bufo bufo) in Switzerland Published: xx xx xxxx Francesco C. Origgi1, Benedikt R. Schmidt 2,3, Petra Lohmann4, Patricia Otten5, Roman K. Meier1, Simone R. R. Pisano1, Gaia Moore-Jones1, Marco Tecilla6, Ursula Sattler1, Thomas Wahli1, Veronique Gaschen7 & Michael H. Stofel7 Here we report the discovery and partial characterization of a novel herpesvirus tentatively named Bufonid herpesvirus 1 (BfHV1) from severe dermatitis in free ranging common toads (Bufo bufo) in Switzerland. The disease has been observed in toads every year since 2014, in spring, during the mating season, at diferent and distant locations. The virus is found in the skin and occasionally in the brain of infected toads. The genome of the virus is at least 158 Kb long and contains at least 152 open reading frames with a minimal length of 270 nt. The genome of BfHV1 contains all the signature genes that are present in alloherpesviruses. Phylogenetic analysis based on the amino acid sequence of the DNA polymerase and terminase proteins positions the novel virus among the members of the genus Batrachovirus, family Alloherpesviridae. This is the frst herpesvirus ever characterized in common toads. Amphibians are undergoing a major decline worldwide1,2. Te reasons for this unprecedented loss in biodiversity are only partially understood3. Among potential contributors, infectious diseases have recently raised attention as important players4,5. In addition to well-characterized amphibian pathogens including chytrids6–9 and rana- viruses5,10,11, it is likely that other pathogens or putative pathogens, whose role in amphibian disease ecology is basically unknown, though not irrelevant, are still to be discovered and better investigated12. -
Cyprinid Herpesvirus 3
1 © 2015. This manuscript version is made available under the CC-BY-NC-ND 4.0 license 2 http://creativecommons.org/licenses/by-nc-nd/4.0/ 3 doi:10.1016/bs.aivir.2015.03.001 4 Running title: Cyprinid herpesvirus 3 5 Title: Cyprinid herpesvirus 3, an archetype of fish alloherpesviruses 6 Authors and Affiliations 7 Maxime Boutier 1, Maygane Ronsmans 1, Krzysztof Rakus 1, Joanna Jazowiecka-Rakus 1, 8 Catherine Vancsok 1, Léa Morvan 1, Ma. Michelle D. Peñaranda 1, David M. Stone 2, Keith 9 Way 2, Steven J. van Beurden 3, Andrew J. Davison 4 and Alain Vanderplasschen 1* 10 11 1 Immunology-Vaccinology (B43b), Department of Infectious and Parasitic Diseases, 12 Fundamental and Applied Research for Animals & Health (FARAH), Faculty of Veterinary 13 Medicine, University of Liège, B-4000 Liège, Belgium. 14 2 The Centre for Environment, Fisheries and Aquaculture Science, Weymouth Laboratory, 15 Barrack Road, The Nothe, Weymouth, Dorset DT4 8UB, United Kingdom. 16 3 Department of Pathobiology, Faculty of Veterinary Medicine, Utrecht University, Yalelaan 17 1, 3584CL Utrecht, The Netherlands. 18 4 MRC - University of Glasgow Centre for Virus Research, 8 Church Street, Glasgow G11 19 5JR, United Kingdom. 20 21 22 * Corresponding author. Mailing address: Immunology-Vaccinology (B43b), Department of 23 Infectious and Parasitic Diseases, Faculty of Veterinary Medicine, University of Liège, 24 B-4000 Liège, Belgium. Phone: 32-4-366 42 64 - Fax: 32-4-366 42 61 25 E-mail: [email protected] 26 Author’s contacts (see affiliations above) 27 28 Maxime Boutier: [email protected] ; +32 4 366 42 66 29 Maygane Ronsmans: [email protected] ; +32 4 366 42 66 30 Krzysztof Rakus: [email protected] ; +32 4 366 42 66 31 Joanna Jazowiecka-Rakus: [email protected] ; +32 4 366 42 66 32 Catherine Vancsok: [email protected] ; +32 4 366 42 66 33 Léa Morvan: [email protected] ; +32 4 366 42 66 34 Ma. -
The Role of Viral Glycoproteins and Tegument Proteins in Herpes
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2014 The Role of Viral Glycoproteins and Tegument Proteins in Herpes Simplex Virus Type 1 Cytoplasmic Virion Envelopment Dmitry Vladimirovich Chouljenko Louisiana State University and Agricultural and Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Veterinary Pathology and Pathobiology Commons Recommended Citation Chouljenko, Dmitry Vladimirovich, "The Role of Viral Glycoproteins and Tegument Proteins in Herpes Simplex Virus Type 1 Cytoplasmic Virion Envelopment" (2014). LSU Doctoral Dissertations. 4076. https://digitalcommons.lsu.edu/gradschool_dissertations/4076 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. THE ROLE OF VIRAL GLYCOPROTEINS AND TEGUMENT PROTEINS IN HERPES SIMPLEX VIRUS TYPE 1 CYTOPLASMIC VIRION ENVELOPMENT A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Interdepartmental Program in Veterinary Medical Sciences through the Department of Pathobiological Sciences by Dmitry V. Chouljenko B.Sc., Louisiana State University, 2006 August 2014 ACKNOWLEDGMENTS First and foremost, I would like to thank my parents for their unwavering support and for helping to cultivate in me from an early age a curiosity about the natural world that would directly lead to my interest in science. I would like to express my gratitude to all of the current and former members of the Kousoulas laboratory who provided valuable advice and insights during my tenure here, as well as the members of GeneLab for their assistance in DNA sequencing. -
Viruses Status January 2013 FOEN/FOPH 2013 1
Classification of Organisms. Part 2: Viruses Status January 2013 FOEN/FOPH 2013 1 Authors: Prof. Dr. Riccardo Wittek, Dr. Karoline Dorsch-Häsler, Julia Link > Classification of Organisms Part 2: Viruses The classification of viruses was first published in 2005 and revised in 2010. Classification of Organisms. Part 2: Viruses Status January 2013 FOEN/FOPH 2013 2 Name Group Remarks Adenoviridae Aviadenovirus (Avian adenoviruses) Duck adenovirus 2 TEN Duck adenovirus 2 2 PM Fowl adenovirus A 2 Fowl adenovirus 1 (CELO, 112, Phelps) 2 PM Fowl adenovirus B 2 Fowl adenovirus 5 (340, TR22) 2 PM Fowl adenovirus C 2 Fowl adenovirus 10 (C-2B, M11, CFA20) 2 PM Fowl adenovirus 4 (KR-5, J-2) 2 PM Fowl adenovirus D 2 Fowl adenovirus 11 (380) 2 PM Fowl adenovirus 2 (GAL-1, 685, SR48) 2 PM Fowl adenovirus 3 (SR49, 75) 2 PM Fowl adenovirus 9 (A2, 90) 2 PM Fowl adenovirus E 2 Fowl adenovirus 6 (CR119, 168) 2 PM Fowl adenovirus 7 (YR36, X-11) 2 PM Fowl adenovirus 8a (TR59, T-8, CFA40) 2 PM Fowl adenovirus 8b (764, B3) 2 PM Goose adenovirus 2 Goose adenovirus 1-3 2 PM Pigeon adenovirus 2 PM TEN Turkey adenovirus 2 TEN Turkey adenovirus 1, 2 2 PM Mastadenovirus (Mammalian adenoviruses) Bovine adenovirus A 2 Bovine adenovirus 1 2 PM Bovine adenovirus B 2 Bovine adenovirus 3 2 PM Bovine adenovirus C 2 Bovine adenovirus 10 2 PM Canine adenovirus 2 Canine adenovirus 1,2 2 PM Caprine adenovirus 2 TEN Goat adenovirus 1, 2 2 PM Equine adenovirus A 2 Equine adenovirus 1 2 PM Equine adenovirus B 2 Equine adenovirus 2 2 PM Classification of Organisms. -
Supporting Information
Supporting Information Wu et al. 10.1073/pnas.0905115106 20 15 10 5 0 10 15 20 25 30 35 40 Fig. S1. HGT cutoff and tree topology. Robinson-Foulds (RF) distance [Robinson DF, Foulds LR (1981) Math Biosci 53:131–147] between viral proteome trees with different horizontal gene transfer (HGT) cutoffs h at feature length 8. Tree distances are between h and h-1. The tree topology remains stable for h in the range 13–31. We use h ϭ 20 in this work. Wu et al. www.pnas.org/cgi/content/short/0905115106 1of6 20 18 16 14 12 10 8 6 0.0/0.5 0.5/0.7 0.7/0.9 0.9/1.1 1.1/1.3 1.3/1.5 Fig. S2. Low complexity features and tree topology. Robinson-Foulds (RF) distance between viral proteome trees with different low-complexity cutoffs K2 for feature length 8 and HGT cutoff 20. The tree topology changes least for K2 ϭ 0.9, 1.1 and 1.3. We choose K2 ϭ 1.1 for this study. Wu et al. www.pnas.org/cgi/content/short/0905115106 2of6 Table S1. Distribution of the 164 inter-viral-family HGT instances bro hr RR2 RR1 IL-10 Ubi TS Photol. Total Baculo 45 1 10 9 11 1 77 Asco 11 7 1 19 Nudi 1 1 1 3 SGHV 1 1 2 Nima 1 1 2 Herpes 48 12 Pox 18 8 2 3 1 3 35 Irido 1 1 2 4 Phyco 2 3 2 1 8 Allo 1 1 2 Total 56 8 35 24 6 17 14 4 164 The HGT cutoff is 20 8-mers. -
Herpèsvirus De Primates
4/11/11 Herpèsvirus de Primates Vincent Lacoste Laboratoire des Interactions Virus-Hôtes Institut Pasteur de la Guyane Académie vétérinaire de France - Pathologie comparée des Herpèsviroses – 3 Novembre 2011 Structure Taxonomique de l’ordre Herpesvirales Famille Sous-famille Genre Espèces Alloherpesviridae Batrachovirus Ranid herpesvirus 1 Cyprinivirus Cyprinid herpesvirus 3 Ictalurivirus Ictalurid herpesvirus 1 Salmonivirus Salmonid herpesvirus 1 Herpesviridae Alphaherpesvirinae Iltovirus Gallid herpesvirus 1 Mardivirus Gallid herpesvirus 2 Simplexvirus Human herpesvirus 1 Varicellovirus Human herpesvirus 3 Betaherpesvirinae Cytomegalovirus Human herpesvirus 5 Muromegalovirus Murid herpesvirus 1 Proboscivirus Elephantid herpesvirus 1 Roseolovirus Human herpesvirus 6 Gammaherpesvirinae Lymphocryptovirus Human herpesvirus 4 Macavirus Alcelaphine herpesvirus 1 Percavirus Equid herpesvirus 2 Rhadinovirus Saimiriine herpesvirus 2 Malacoherpesviridae Ostreavirus Ostreid herpesvirus 1 1 4/11/11 Herpèsvirus de primates reconnus par l’ICTV Phylogénie des Herpèsvirus de primates Simplex OW OW Rhadino NW RV1 RV2 HSV2 NW HSV1 Varicello VZV HHV8 Roseolo HHV6 HHV7 NW NW Cytomégalo HCMV Lymphocrypto EBV OW OW + de 100 espèces virales distinctes 2 4/11/11 La stratégie « CODEHOP » COnsensus DEgenerate Hybrid Oligonucleotide Primers Choix d’une famille virale Identification d’un gène conservé BLAST/NCBI Obtention des séquences protéique blockMaker/ClustalW Identification de motifs conservés Détermination de primers « CODEHOP » http://dbmi-icode-01.dbmi.pitt.edu/i-codehop-context/Welcome 3 4/11/11 Phylogénie des Cytomégalovirus Virus Hôtes d’après Leendertz et al., 2009 γ1-herpesvirinae de primates … Abbréviations Nom commun Découverte Hôtes References Epstein-Barr Virus EBV 1964 Homme Epstein et al. )1964( (Human herpesvirus 4: HHV-4) Herpesvirus pan Chimpanzé commun HV pan 1968 Landon et al. )1968( (Pongine herpesvirus 1) Pan troglodytes Herpesvirus papio Babouin HV papio (Cercopithecine herpesvirus 12: 1974 Lapin et al.