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Epizootiologie Et Contribution À La Caractérisation De L'agent Infectieux

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Epizootiologie Et Contribution À La Caractérisation De L'agent Infectieux Epizootiologie et contribution à la caractérisation de l’agent infectieux de la maladie du muscle marron, une pathologie émergente de la palourde japonaise, Venerupis philippinarum Cindy Binias To cite this version: Cindy Binias. Epizootiologie et contribution à la caractérisation de l’agent infectieux de la maladie du muscle marron, une pathologie émergente de la palourde japonaise, Venerupis philippinarum. Sciences agricoles. Université Sciences et Technologies - Bordeaux I, 2013. Français. NNT : 2013BOR14935. tel-00949926 HAL Id: tel-00949926 https://tel.archives-ouvertes.fr/tel-00949926 Submitted on 20 Feb 2014 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE PRÉSENTÉE A L’UNIVERSITÉ BORDEAUX 1 Ecole doctorale Sciences et Environnements Par Melle Cindy BINIAS POUR OBTENIR LE GRADE DE DOCTEUR SPÉCIALITÉ : Biogéochimie et Ecosystèmes Caractérisation de l'agent infectieux et épizootiologie de la maladie du muscle marron (BMD), une pathologie émergente de la palourde japonaise, Venerupis (= Ruditapes) philippinarum Soutenance prévue le : 6 décembre 2013 Après avis de : M Michel BREMONT-DELETANG, Directeur de recherche INRA, Jouy-en-Josas Rapporteur M Philippe SOUDANT, Directeur de recherche CNRS, Université de Bretagne occidentale Rapporteur Deat la oissio deae formée de : Mme Isabelle ARZUL, Cadre de recherche IFREMER, La Tremblade Examinatrice M Michel BREMONT-DELETANG, Directeur de recherche INRA, Jouy-en-Josas Rapporteur M Frédéric GARABETIAN, Professeur, Université Bordeaux 1 Examinateur M Patrice GONZALEZ, Chargé de recherche CNRS, Université Bordeaux 1 Directeur de thèse M Xavier de MONTAUDOUIN, Maître de conférences, Université Bordeaux 1 Directeur de thèse M Philippe SOUDANT, Directeur de recherche CNRS, Université de Bretagne occidentale Rapporteur Sommaire Introduction générale ........................................................................................................................... 1 1.Contexte de l'étude ......................................................................................................................... 2 1.1 La part des bivalves dans la production mondiale des pêches et de l'aquaculture ................. 2 1.2 Impact des maladies sur le suivi des stocks ............................................................................. 3 2. La maladie du muscle marron (BMD) ............................................................................................. 6 2.1 La palourde japonaise Venerupis philippinarum ...................................................................... 7 2.2 Le bassin d'Arcachon .............................................................................................................. 10 2.3 Etat actuel des connaissances sur la BMD et l'agent étiologique .......................................... 14 2.3.1 Sur les palourdes japonaises du bassin d'Arcachon ..................................................................... 14 2.3.1.1 Description de la maladie ...................................................................................................... 14 2.3.1.2 Agent étiologique .................................................................................................................. 16 2.3.1.3 Impacts sur l'hôte .................................................................................................................. 17 2.3.1.4 Quelques chiffres ................................................................................................................... 18 .. …et ailleus ................................................................................................................................... 18 3. Problématique et organisation du manuscrit .............................................................................. 20 PARTIE 1. La BMD : epizootiologie et impact sur l'hôte Chapitre I. Facteurs environnementaux contribuant au développement de la BMD et de la perkinsose chez la palourde japonaise (Venerupis philippinarum) dans le basin d'Arcachon ........ 25 1. Introduction .................................................................................................................................. 26 2. Materials and Methods ................................................................................................................ 28 2.1 Study site ................................................................................................................................ 28 2.2 Sampling procedure ................................................................................................................ 28 2.3 Environmental factors ............................................................................................................ 28 2.3.1 Grain size and organic matter ...................................................................................................... 28 2.3.2 Biomass of seagrass foliage .......................................................................................................... 28 2.3.3 Temperature, salinity, emersion time .......................................................................................... 30 2.4 Bivalve models and associated pathology .............................................................................. 32 2.4.1 Manila clam and Perkinsus ........................................................................................................... 32 2.4.2 Manila clam and BMD .................................................................................................................. 32 3. Results .......................................................................................................................................... 33 3.1 Environmental factors ............................................................................................................ 33 3.2 Manila clam and Perkinsosis .................................................................................................. 35 3.3 Manila clam and Brown Muscle Disease ................................................................................ 37 4. Discussion ..................................................................................................................................... 38 Chapitre II. Suivi Spatio-temporel de la BMD sur les palourdes du bassin d'Arcachon ................... 41 1. Introduction .................................................................................................................................. 42 2. Matériels et méthodes ................................................................................................................. 43 2.1 Site d'étude ............................................................................................................................. 43 2.2 Campagnes annuelles d'échantillonnage ............................................................................... 43 2.3 Prévalence et intensité de la BMD ......................................................................................... 44 2.4 Suivi mensuel .......................................................................................................................... 44 2.5 Analyses statistiques .............................................................................................................. 45 3. Résultats ....................................................................................................................................... 46 3.1 Comparaison à l'échelle du bassin ......................................................................................... 46 3.2 Comparaison à l'échelle des strates ....................................................................................... 46 3.3 Comparaison de différentes gammes de tailles ..................................................................... 48 3.4 Comparaison des deux sous-bassins ...................................................................................... 50 3.5 Analyse des palourdes V. decussata et P. aureus .................................................................. 51 3.6 Suivi de cohorte ...................................................................................................................... 52 4. Discussion ..................................................................................................................................... 53 4.1 Evolution de la BMD et des effectifs de palourde .................................................................. 53 4.2 Dynamique du système BMD/palourde ................................................................................. 54 4.3 Spécificité de la BMD .............................................................................................................. 55 Chapitre III. BMD : impact sur la biologie de la palourde japonaise Venerupis (=Ruditapes) philippinarum .....................................................................................................................................
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