Statistical Analysis of Nondisjunction Assays in Drosophila
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Drosophila Melanogaster”
| PRIMER More than Meets the Eye: A Primer for “Timing of Locomotor Recovery from Anoxia Modulated by the white Gene in Drosophila melanogaster” Bradley M. Hersh1 Department of Biology, Allegheny College, Meadville, Pennsylvania 16335 ORCID ID: 0000-0003-2098-4417 (B.M.H.) SUMMARY A single gene might have several functions within an organism, and so mutational loss of that gene has multiple effects across different physiological systems in the organism. Though the white gene in Drosophila melanogaster was identified originally for its effect on fly eye color, an article by Xiao and Robertson in the June 2016 issue of GENETICS describes a function for the white gene in the response of Drosophila to oxygen deprivation. This Primer article provides background information on the white gene, the phenomenon of pleiotropy, and the molecular and genetic approaches used in the study to demonstrate a new behavioral function for the white gene. KEYWORDS education; Drosophila; pleiotropy; behavior TABLE OF CONTENTS Abstract 1369 Molecular Nature of the white Gene 1370 The Challenge of Pleiotropy 1370 Tissue-Specific Expression and RNA Interference (RNAi) 1371 Understanding the Experimental Details 1372 Establishing a behavioral phenotype 1372 Introgression: eliminating the trivial 1372 Dosage and position effect: complicating the story 1373 Molecular tricks: dissecting function and location of action 1373 Suggestions for Classroom Use 1374 Questions for Discussion 1374 HE white gene was the first Drosophila melanogaster the first attached-X and ring-X chromosome variants), is re- Tmutant discovered by Thomas Hunt Morgan in 1910, ported to have exclaimed “Oh, I do hope the white-eyed flyis following an exhaustive search for variant forms of the fly still alive” from her hospital bed after having just delivered (Morgan 1910). -
123 Author's Personal Copy
Author's personal copy Synthese DOI 10.1007/s11229-012-0147-2 Models of data and theoretical hypotheses: a case-study in classical genetics Marion Vorms Received: 17 July 2011 / Accepted: 13 October 2011 © Springer Science+Business Media B.V. 2012 Abstract Linkage (or genetic) maps are graphs, which are intended to represent the linear ordering of genes on the chromosomes. They are constructed on the basis of statistical data concerning the transmission of genes. The invention of this technique in 1913 was driven by Morgan’s group’s adoption of a set of hypotheses concerning the physical mechanism of heredity. These hypotheses were themselves grounded in Morgan’s defense of the chromosome theory of heredity, according to which chro- mosomes are the physical basis of genes. In this paper, I analyze the 1919 debate between William Castle and Morgan’s group, about the construction of genetic maps. The official issue of the debate concerns the arrangement of genes on chromosomes. However, the disputants tend to carry out the discussions about how one should model the data in order to draw predictions concerning the transmission of genes; the debate does not bear on the data themselves, nor does it focus on the hypotheses explaining these data. The main criteria that are appealed to by the protagonists are simplicity and predictive efficacy. However, I show that both parties’ assessments of the simplicity and predictive efficacy of different ways of modeling the data themselves depend on background theoretical positions. I aim at clarifying how preference for a given model and theoretical commitments articulate. -
Calvin Bridges' Experiments on Nondisjunction As Evidence for The
Published on The Embryo Project Encyclopedia (https://embryo.asu.edu) Calvin Bridges’ Experiments on Nondisjunction as Evidence for the Chromosome Theory of Heredity (1913-1916) [1] By: Gleason, Kevin Keywords: Thomas Hunt Morgan [2] Drosophila [3] From 1913 to 1916, Calvin Bridges performed experiments that indicatedg enes [5] are found on chromosomes. His experiments were a part of his doctoral thesis advised by Thomas Hunt Morgan [6] in New York, New York. In his experiments, Bridges studied Drosophila [7], the common fruit fly, and by doing so showed that a process called nondisjunction caused chromosomes, under some circumstances, to fail to separate when forming sperm [8] and egg [9] cells. Nondisjunction, as described by Bridges, caused sperm [8] or egg [9] cells to contain abnormal amounts of chromosomes. In some cases, that caused the offspring produced by the sperm [8] or eggs to display traits that they would typically not have. His research on nondisjunction provided evidence that chromosomes carry genetic traits, including those that determine the sex of an organism. At the beginning of the twentieth century, other researchers were starting to establish the role that chromosomes play in heredity. In 1910, Morgan provided some evidence that genes [5], or the material factors that were thought to control heredity, are located on the chromosome. While Morgan was mating Drosophila [10], which typically had red eyes, Morgan found that one of the offspring flies had white eyes. He proceeded to mate the white-eyed fly with other flies, and he observed a generation of offspring in which only some of the male offspring, but only the male offspring, had white eyes. -
Alfred Henry Sturtevant (1891–1970) [1]
Published on The Embryo Project Encyclopedia (https://embryo.asu.edu) Alfred Henry Sturtevant (1891–1970) [1] By: Gleason, Kevin Keywords: Thomas Hunt Morgan [2] Drosophila [3] Alfred Henry Sturtevant studied heredity in fruit flies in the US throughout the twentieth century. From 1910 to 1928, Sturtevant worked in Thomas Hunt Morgan’s research lab in New York City, New York. Sturtevant, Morgan, and other researchers established that chromosomes play a role in the inheritance of traits. In 1913, as an undergraduate, Sturtevant created one of the earliest genetic maps of a fruit fly chromosome, which showed the relative positions of genes [4] along the chromosome. At the California Institute of Technology [5] in Pasadena, California, he later created one of the firstf ate maps [6], which tracks embryonic cells throughout their development into an adult organism. Sturtevant’s contributions helped scientists explain genetic and cellular processes that affect early organismal development. Sturtevant was born 21 November 1891 in Jacksonville, Illinois, to Harriet Evelyn Morse and Alfred Henry Sturtevant. Sturtevant was the youngest of six children. During Sturtevant’s early childhood, his father taught mathematics at Illinois College in Jacksonville. However, his father left that job to pursue farming, eventually relocating seven-year-old Sturtevant and his family to Mobile, Alabama. In Mobile, Sturtevant attended a single room schoolhouse until he entered a public high school. In 1908, Sturtevant entered Columbia University [7] in New York City, New York. As a sophomore, Sturtevant took an introductory biology course taught by Morgan, who was researching how organisms transfer observable characteristics, such as eye color, to their offspring. -
Perspectives Anecdotal, Historical and Critical Commentaries on Genetics Edited by James I;
Copyright 0 1997 by the Genetics Society of America Perspectives Anecdotal, Historical and Critical Commentaries on Genetics Edited by James I;. Crow and William F. Dove Seventy Years Ago: Mutation Becomes Experimental James F. Crow* and Seymour Abrahamsont *Genetics Laboratory and +Departmentof Zoology, University of Wisconsin, Madison, Wisconsin 53706 N 1927 H. J. MULLER(1890-1967) published in Sci- against indiscriminate use of high-energy radiation, a I ence a paper entitled “Artificial Transmutation of crusade bolstered by the later demonstration thatmuta- the Gene.” It reported the first experimental produc- tion was linearly related to dose, down to doses as low tion of mutations and opened a new era in genetics. as could be practically studied. The title is curious. Why transmutation rather than muta- In the summerof 1927 MULLERgave a major paper at tion? The answer emerges from another paper(MULLER the Fifth International Congress of Genetics in Berlin. 1928a), written in 1926. After reviewing the repeated Typically, he scribbled the paper in transit and was still failure of efforts by many workers to modify the muta- preparing slides up to the time of its presentation. The tion rate, MULLERasked the question: “Do the preced- talk is said to have been confusing, but themessage was ing results mean, then, that mutation is unique among clear. This time he gave the full details and the skeptics biological processes in being itself outside the reach of were silenced. Helpful as he was throughout his life, modification or control,-that it occupies a position CURTSTERN got the paper typed, and it was published similar to that till recently characteristic of atomic trans- the next year (MULLER 1928b). -
The Dissemination of the Chromosome Theory of Mendelian Heredity By
The dissemination of the chromosome theory of Mendelian heredity by Morgan and his collabora- tors around 1915: a case study on the distortion of science by scientists Lilian Al-Chueyr Pereira Martins * Abstract : In the transposition of scientific concepts, teachers usually provide their students with a knowledge that does not correspond to the complex science that is produced by scientists. This difference between the results of research and the sci- ence that is taught also may be found when scientists disseminate their own ideas. In such a process they may oversimplify the scientific results and present a “clean” and attractive account that will help them to gain adepts, at the cost of hiding the intri- cacy of the scientific process. This paper presents a historical case study of the dis- semination by Thomas Morgan, Alfred Sturtevant, Herman Muller and Calvin Bridges of their ideas concerning the Mendelian chromosome theory in the The Mechanism of Mendelian Heredity (1915). It analyses the process of simplification in this case, discussing some educational parallels, pointing out the resulting distortion of the scientific image and suggesting means of circumventing those problems. Key-words : history of genetics; chromosome theory; Morgan, Thomas Hunt; trans- position A difusão da teoria cromossômica da herança mendeliana por Morgan e seus colaboradores em torno de 1915: um estudo de caso de distorção da ciência por cientistas Resumo : Na transposição de conceitos científicos, os professores costumam apre- sentar a seus estudantes um conhecimento que não corresponde à ciência complexa produzida pelos cientistas. Esta diferença entre os resultados da pesquisa e a ciência que é ensinada pode também ser encontrada quando os cientistas divulgam suas próprias idéias. -
LECTURE 3: Chromosomes and Inheritance Course Website: Reading: Ch
LECTURE 3: Chromosomes and Inheritance Course website: http://mcb.berkeley.edu/courses/mcb140/ Reading: Ch. 4, p. 77-83; 98-103 Many of the classic papers mentioned in this and previous lectures are available at http://www.esp.org/foundations/genetics/classical/ (there’s a link to ESP on the website) Problems: Ch. 4, solved probs I, II; also 4-5, 4-11, 4-17 – 4.21 Today, we’ll discuss the evidence that confirms that genes reside on chromosomes. THE CHROMOSOMAL THEORY OF INHERITANCE Evidence that genes reside in the nucleus About the time Mendel began his experiments, cytologists were using microscopy to follow the union of paternal and maternal gametes during fertilization in sea urchins and in frogs. Because the nuclei are the only elements that are contributed equally from the male and female gametes, it was hypothesized that the nucleus contained the genetic material. Evidence that genes reside in chromosomes In the 1880s, technological advances allowed microscopists to follow chromosomes in the nucleus during mitosis and meiosis. During mitosis, each daughter cell inherited the same number and type of chromosomes as the parent cell. During meiosis, each of the gametes receives only one chromosome of each chromosome pair and the chromosomes assort independently as predicted by Mendel. Furthermore, the union of maternal and paternal gametes during fertilization yields a zygote with two complete chromosomal sets, and the maternally- and paternally-derived chromosomes are alike in size and shape (with the exception of the sex chromosomes in most species.) This suggested that chromosomes carry the hereditary information. Sexual identity is correlated in many organisms with the inheritance of particular chromosomes. -
Admixture Models and the Breeding Systems of H. S. Jennings: a GENETICS Connection
| COMMENTARY Admixture Models and the Breeding Systems of H. S. Jennings: A GENETICS Connection Noah A. Rosenberg Department of Biology, Stanford University, Stanford, California 94305-5020 The lions of the field have published seminal work in our journal, from Bridges, Muller, and McClintock to Brenner, Horvitz, and Hartwell. Authors can publish in the same journal as did Luria and Delbruck, and Sewall Wright, and Ronald Fisher, and Crow and Kimura (and many other luminaries). And while GENETICS provides a professional and scientific thread that extends back to the founders of our field, it also points to our future. JOHNSTON 2014, p. 10 ONG-TIME GENETICS readers are bound to learn (see the cally admixed populations—populations formed from genetic Lperspective by Ganetzky and Hawley 2016, this issue) mixing of two or more groups that have long been separated— that the journal’s first article, Vol. 1, p. 1, reported a founda- just as in a classic F2 cross, individual genomes consist of a tional study whose results continue to occupy a central place mosaic of regions with different ancestries. The proliferation in the field: the celebrated work of Calvin Bridges on “Non- of population-genetic data, statistical advances in inferring the disjunction as proof of the chromosome theory of heredity” populations of origin of genomic segments, interest in ancient (Bridges 1916). admixture, and the prospects for mapping trait loci in admixed What other treasures lie hidden in the 100-year record of populations formed by natural experiments have all helped give GENETICS, and what links do they have to ongoing events in rise to substantial activity in the study of genetic admixture. -
The Thomas Hunt Morgan Era in Biology
The Thomas Hunt Morgan Era in Biology Why did Caftan officials pursue a biologist so near retirement by Judith R. Goodstein to establish the schoots division of biology? This story 0/ the genesis 0/ biology at Caltech is The biochemist Henry Borsook liked to tell excerpted/rom Millikan's School: A History of the about a conversation Thomas Hunt Morgan had California Institute of Technology (© judith R. with the physicist Albert Einstein, a campus Goodrtein) and is reprinted here with pemziSJiol1 of the visitor in the early thirties. At a point in the publisher. W. W. Norton & C01llpcmy. Probably no conversation, Einstein supposedly asked, "What one wm in c/ better positioll to u'rite Calterh's history in hell are you doing in a place like thisl " "The thcm judith Goodstein. who, since becoming the future of biology rests in the application of the Imtittite'sjirJt archillist ilz 1968, hm had an inside methods and ideas of physics, chemistry, and trark on learning 11'hat went on when. In the yettrs mathematics," replied Morgan. The physicist sinre. she has built the arrhilles, nou' housed in persisted. "Do you think you will ever be able to expanded ncu,/acilities in the Beckman Imtitute. into a explain in terms of chemistry or physics so notable resource in science bistory-cmd ctlso knOUT important a biological phenomenon as first love)" where all the bodies are bllried Research for the book. "What did you say to that one)" Borsook asked u'hirh apjJropriately apjJearJ in time j()r Calteeh's Morgan afterward. "I tried to explain something Ce7Ztennial, cl'as supported by the HClples Foundcttion. -
Enter the Fruit Fly Morgan Et Al. 1915
Thomas Hunt Morgan, the first native- Enter the fruit fly born American to win the Nobel Prize, founder of modern genetics MCB140 9-8-08 1 MCB140 9-8-08 2 Morgan et al. 1915 “As will be shown now, certain factors follow the distribution of the X chromosome and Morgan Bridges Muller are therefore supposed to be contained in them.” Emphasis mine – fdu. ↓ Genes lie on chromosomes Sturtevant MCB140 9-8-08 4 “The supposition that particles of chromatin, indistinguishable from each other and indeed almost homogeneous under any known test, can by their material nature confer all the properties of life surpasses the range of even the most convinced materialism.” Bateson, W. (1916) The mechanism of Mendelian heredity (a review). Science, 44, 536-543. MCB140 9-8-08 5 MCB140 9-8-08 6 1 A problem and a solution (aka chr. 1) “The value and utility of any experiment…” (Mendel) “What was needed to open up genetics to new phenomena was an organism that bred rapidly, produced lots of progeny, and was inexpensive to maintain” (Carlson) “Fruit flies can be raised on a mixture of corn meal, yeast, sugar, and agar. Flies complete their life cycle from fertilization to emergence of the adult fly in 10 days. A female can produce 3,000 progeny in her lifetime. A single male can sire Note: no crossing over in male meiosis! well over 10,000 offspring.” (Hartwell) MCB140 9-8-08 7 MCB140 9-8-08 8 Morgan and Drosophila (go Bears) Morgan was not a geneticist by training (he was an embryologist), and he was not the first one to use Drosophila for purposes of genetic research (Castle was). -
Y Chromosome
Biology 321 The inheritance patterns discovered by Mendel are true for genes that are located on autosomes What is an autosome? 1 The fly room at Columbia University ~ 1920 l to r: Calvin Bridges, A. sturtevant, Thomas Hunt Morgan th Early 20 century fly guys What do the inheritance patterns of sex-linked traits look like? First look at experiments done in the early 1900’s by a fruifly geneticist named Thomas Hunt Morgan 2 The fruit fly Drosophila melanogaster has been used extensively in genetic research because it is a good experimental organism: • small size (2mm) 12 day generation time large broods of progeny • external anatomy provides for all sorts of possibilities for interesting phenotypic variation The complete DNA sequence of the fly genome was completed in 2000 3 Morgan was doing a routine transfer of his wild- type stocks when he noted a white-eyed male fly in among a stock of wild-type red-eyed animals What do we mean by wild-type phenotype? 4 Wild-type phenotype: the phenotype observed in the standard lab stock or seen most commonly in the wild population In Drosophila, red eye color is the wild-type phenotype 5 Morgan retrieved this white-eyed fly and did a series of crosses: Male fruitflies have a stereotyped courtship display involving following and wing-extension and vibration: see link below form or info http://fire.biol.wwu.edu/trent/trent/fruitflymating.jpg 6 It’s not just about white vs red eyes or curled vs straight wings There are many mutant strains of Drosophila where the male courtship display is abnormal. -
A History of Genetics and Genomics
A History of Genetics and Genomics Phil McClean September 2012 Genomics is a recent convergence of many sciences including genetics, molecular biology, biochemistry, statistics and computer sciences. Before scientists even uttered the word genomics, these other fields were richly developed. Of these fields, the history of genetics and molecular biology are particularly relevant to the techniques, experimental designs, and intellectual approaches used in genomics. The development of computers and the internet has provided researchers ready access to the large body of information generated throughout the world. Table 1 is an extensive history of the major developments in these fields. The narrative will try to unify some of these discoveries into major findings. Mid to Late 19th Century: Evolution, Natural Selection, Particulate Inheritance and Nuclein Understanding origins is a constant pursuit of man. In the 1858, our understanding of the origin of species and how species variability arose was revolutionized by the research of Darwin and Wallace. They described how new species arose via evolution and how natural selection uses natural variation to evolve new forms. The importance of this discovery was reflected in the now famous quote of Dobzhansky: “Nothing in biology makes sense except in the light of evolution.” - Theodore Dobzhansky, The American Biology Teacher, March 1973 A few years later, Gregor Mendel, an Austrian monk, summarized his years of research on peas in his famous publication. In that paper, he described the unit of heredity as a particle that does not change. This was in contrast to the prevailing “blending theory of inheritance.” Equally important, Mendel formalized the importance of developing pure (genotypically homozygous) lines, keeping careful notes, and statistically analyzing the data.