Ancestral Echinoderms from the Chengjiang Deposits of China
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Identical Genomic Organization of Two Hemichordate Hox Clusters
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 22, 2053–2058, November 6, 2012 ª2012 Elsevier Ltd All rights reserved http://dx.doi.org/10.1016/j.cub.2012.08.052 Report Identical Genomic Organization of Two Hemichordate Hox Clusters Robert Freeman,1,12 Tetsuro Ikuta,2,12 Michael Wu,3 [10] have similar organization to the hemichordate cluster, Ryo Koyanagi,2 Takeshi Kawashima,2 Kunifumi Tagawa,4 but with different posterior genes. These results provide Tom Humphreys,5 Guang-Chen Fang,6 Asao Fujiyama,7 genomic evidence for a well-ordered complex in the deutero- Hidetoshi Saiga,8 Christopher Lowe,9 Kim Worley,10 stome ancestor for the hox1–hox9/10 region, with the Jerry Jenkins,11 Jeremy Schmutz,11 Marc Kirschner,1 number and kind of posterior genes still to be elucidated. Daniel Rokhsar,3 Nori Satoh,2,* and John Gerhart3,* 1 Department of Systems Biology, Harvard Medical School, Results and Discussion Boston, MA 02114, USA 2 Marine Genomics Unit, Okinawa Institute of Science and Here we characterize the order, transcriptional orientation, and Technology Graduate University, Onna, clustering of the Hox genes of the genomes of two widely Okinawa 904-0495, Japan studied model hemichordates, Saccoglossus kowalevskii 3 Department of Molecular and Cell Biology, University of and Ptychodera flava [4, 11, 12], that represent two major California, Berkeley, Berkeley, CA 94720-3200, USA evolutionary branches of enteropneust hemichordates that 4 Marine Biological Laboratory, Graduate School of Science, diverged an estimated 400 million years ago (MYa) [13]: Hiroshima University, Onomichi, Hiroshima 722-0073, Japan Saccoglossus, of the direct developing harimaniids, and 5 Department of Cell and Molecular Biology, University of Ptychodera, of the indirect developing ptychoderids [14]. -
Development of the Annelid Axochord: Insights Into Notochord Evolution Antonella Lauri Et Al
RESEARCH | REPORTS ORIGIN OF NOTOCHORD by double WMISH (Fig. 2, F to L). Although none of the genes were exclusively expressed in the annelid mesodermal midline, their combined Development of the annelid coexpression was unique to these cells (implying that mesodermal midline in annelids and chor- damesoderm in vertebrates are more similar to axochord: Insights into each other than to any other tissue). It is unlikely that the molecular similarity between annelid notochord evolution and vertebrate mesodermal midline is due to in- dependent co-option of a conserved gene cas- Antonella Lauri,1*† Thibaut Brunet,1* Mette Handberg-Thorsager,1,2‡ sette, because this would require either that this Antje H.L. Fischer,1§ Oleg Simakov,1 Patrick R. H. Steinmetz,1‖ Raju Tomer,1,2¶ cassette was active elsewhere in the body (which Philipp J. Keller,2 Detlev Arendt1,3# is not the case) or that multiple identical inde- pendent events of co-option occurred (which is The origin of chordates has been debated for more than a century, with one key issue being unparsimonious). As in vertebrates, the meso- the emergence of the notochord. In vertebrates, the notochord develops by convergence dermal midline resembles the neuroectodermal and extension of the chordamesoderm, a population of midline cells of unique molecular midline, which expresses foxD, foxA, netrin, slit, identity. We identify a population of mesodermal cells in a developing invertebrate, the marine and noggin (figs. S6 and S7) but not brachyury or annelid Platynereis dumerilii, that converges and extends toward the midline and expresses a twist. However, unlike in chicken (10), the an- notochord-specific combination of genes. -
PUBLICATIONS by JAMES SPRINKLE 1965 -- Sprinkle, James
PUBLICATIONS BY JAMES SPRINKLE 1965 -- Sprinkle, James. 1965. Stratigraphy and sedimentary petrology of the lower Lodgepole Formation of southwestern Montana. M.I.T. Department of Geology and Geophysics, unpublished Senior Thesis, 29 p. (see #56 and 66 below) 1966 1. Sprinkle, James and Gutschick, R. C. 1966. Blastoids from the Sappington Formation of southwest Montana (Abst.). Geological Society of America Special Paper 87:163-164. 1967 2. Sprinkle, James and Gutschick, R. C. 1967. Costatoblastus, a channel fill blastoid from the Sappington Formation of Montana. Journal of Paleon- tology, 41(2):385-402. 1968 3. Sprinkle, James. 1968. The "arms" of Caryocrinites, a Silurian rhombiferan cystoid (Abst.). Geological Society of America Special Paper 115:210. 1969 4. Sprinkle, James. 1969. The early evolution of crinozoan and blastozoan echinoderms (Abst.). Geological Society of America Special Paper 121:287-288. 5. Robison, R. A. and Sprinkle, James. 1969. A new echinoderm from the Middle Cambrian of Utah (Abst.). Geological Society of America Abstracts with Programs, 1(5):69. 6. Robison, R. A. and Sprinkle, James. 1969. Ctenocystoidea: new class of primitive echinoderms. Science, 166(3912):1512-1514. 1970 -- Sprinkle, James. 1970. Morphology and Evolution of Blastozoan Echino- derms. Harvard University Department of Geological Sciences, unpublished Ph.D. Thesis, 433 p. (see #8 below) 1971 7. Sprinkle, James. 1971. Stratigraphic distribution of echinoderm plates in the Antelope Valley Limestone of Nevada and California. U.S. Geological Survey Professional Paper 750-D (Geological Survey Research 1971):D89-D98. 1973 8. Sprinkle, James. 1973. Morphology and Evolution of Blastozoan Echino- derms. Harvard University, Museum of Comparative Zoology Special Publication, 283 p. -
Reinterpretation of the Enigmatic Ordovician Genus Bolboporites (Echinodermata)
Reinterpretation of the enigmatic Ordovician genus Bolboporites (Echinodermata). Emeric Gillet, Bertrand Lefebvre, Véronique Gardien, Emilie Steimetz, Christophe Durlet, Frédéric Marin To cite this version: Emeric Gillet, Bertrand Lefebvre, Véronique Gardien, Emilie Steimetz, Christophe Durlet, et al.. Reinterpretation of the enigmatic Ordovician genus Bolboporites (Echinodermata).. Zoosymposia, Magnolia Press, 2019, 15 (1), pp.44-70. 10.11646/zoosymposia.15.1.7. hal-02333918 HAL Id: hal-02333918 https://hal.archives-ouvertes.fr/hal-02333918 Submitted on 13 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 Reinterpretation of the Enigmatic Ordovician Genus Bolboporites 2 (Echinodermata) 3 4 EMERIC GILLET1, BERTRAND LEFEBVRE1,3, VERONIQUE GARDIEN1, EMILIE 5 STEIMETZ2, CHRISTOPHE DURLET2 & FREDERIC MARIN2 6 7 1 Université de Lyon, UCBL, ENSL, CNRS, UMR 5276 LGL-TPE, 2 rue Raphaël Dubois, F- 8 69622 Villeurbanne, France 9 2 Université de Bourgogne - Franche Comté, CNRS, UMR 6282 Biogéosciences, 6 boulevard 10 Gabriel, F-2100 Dijon, France 11 3 Corresponding author, E-mail: [email protected] 12 13 Abstract 14 Bolboporites is an enigmatic Ordovician cone-shaped fossil, the precise nature and systematic affinities of 15 which have been controversial over almost two centuries. -
Hemichordate Phylogeny: a Molecular, and Genomic Approach By
Hemichordate Phylogeny: A molecular, and genomic approach by Johanna Taylor Cannon A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 4, 2014 Keywords: phylogeny, evolution, Hemichordata, bioinformatics, invertebrates Copyright 2014 by Johanna Taylor Cannon Approved by Kenneth M. Halanych, Chair, Professor of Biological Sciences Jason Bond, Associate Professor of Biological Sciences Leslie Goertzen, Associate Professor of Biological Sciences Scott Santos, Associate Professor of Biological Sciences Abstract The phylogenetic relationships within Hemichordata are significant for understanding the evolution of the deuterostomes. Hemichordates possess several important morphological structures in common with chordates, and they have been fixtures in hypotheses on chordate origins for over 100 years. However, current evidence points to a sister relationship between echinoderms and hemichordates, indicating that these chordate-like features were likely present in the last common ancestor of these groups. Therefore, Hemichordata should be highly informative for studying deuterostome character evolution. Despite their importance for understanding the evolution of chordate-like morphological and developmental features, relationships within hemichordates have been poorly studied. At present, Hemichordata is divided into two classes, the solitary, free-living enteropneust worms, and the colonial, tube- dwelling Pterobranchia. The objective of this dissertation is to elucidate the evolutionary relationships of Hemichordata using multiple datasets. Chapter 1 provides an introduction to Hemichordata and outlines the objectives for the dissertation research. Chapter 2 presents a molecular phylogeny of hemichordates based on nuclear ribosomal 18S rDNA and two mitochondrial genes. In this chapter, we suggest that deep-sea family Saxipendiidae is nested within Harrimaniidae, and Torquaratoridae is affiliated with Ptychoderidae. -
The Genetic Factors of Bilaterian Evolution Peter Heger1*, Wen Zheng1†, Anna Rottmann1, Kristen a Panfilio2,3, Thomas Wiehe1
RESEARCH ARTICLE The genetic factors of bilaterian evolution Peter Heger1*, Wen Zheng1†, Anna Rottmann1, Kristen A Panfilio2,3, Thomas Wiehe1 1Institute for Genetics, Cologne Biocenter, University of Cologne, Cologne, Germany; 2Institute for Zoology: Developmental Biology, Cologne Biocenter, University of Cologne, Cologne, Germany; 3School of Life Sciences, University of Warwick, Gibbet Hill Campus, Coventry, United Kingdom Abstract The Cambrian explosion was a unique animal radiation ~540 million years ago that produced the full range of body plans across bilaterians. The genetic mechanisms underlying these events are unknown, leaving a fundamental question in evolutionary biology unanswered. Using large-scale comparative genomics and advanced orthology evaluation techniques, we identified 157 bilaterian-specific genes. They include the entire Nodal pathway, a key regulator of mesoderm development and left-right axis specification; components for nervous system development, including a suite of G-protein-coupled receptors that control physiology and behaviour, the Robo- Slit midline repulsion system, and the neurotrophin signalling system; a high number of zinc finger transcription factors; and novel factors that previously escaped attention. Contradicting the current view, our study reveals that genes with bilaterian origin are robustly associated with key features in extant bilaterians, suggesting a causal relationship. *For correspondence: [email protected] Introduction The taxon Bilateria consists of multicellular animals -
Plated Cambrian Bilaterians Reveal the Earliest Stages of Echinoderm Evolution
Zamora, S., Rahman, I. A., & Smith, A. B. (2012). Plated Cambrian bilaterians reveal the earliest stages of echinoderm evolution. PLoS ONE, 7(6), [e38296]. https://doi.org/10.1371/journal.pone.0038296 Publisher's PDF, also known as Version of record Link to published version (if available): 10.1371/journal.pone.0038296 Link to publication record in Explore Bristol Research PDF-document University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ Plated Cambrian Bilaterians Reveal the Earliest Stages of Echinoderm Evolution Samuel Zamora1, Imran A. Rahman2, Andrew B. Smith1* 1 Department of Palaeontology, The Natural History Museum, London, United Kingdom, 2 School of Geography, Earth & Environmental Sciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom Abstract Echinoderms are unique in being pentaradiate, having diverged from the ancestral bilaterian body plan more radically than any other animal phylum. This transformation arises during ontogeny, as echinoderm larvae are initially bilateral, then pass through an asymmetric phase, before giving rise to the pentaradiate adult. Many fossil echinoderms are radial and a few are asymmetric, but until now none have been described that show the original bilaterian stage in echinoderm evolution. Here we report new fossils from the early middle Cambrian of southern Europe that are the first echinoderms with a fully bilaterian body plan as adults. Morphologically they are intermediate between two of the most basal classes, the Ctenocystoidea and Cincta. -
Paleontological Contributions
THE UNIVERSITY OF KANSAS PALEONTOLOGICAL CONTRIBUTIONS July 14, 1988 Paper 120 HOMALOZOAN ECHINODERMS OF THE WHEELER FORMATION (MIDDLE CAMBRIAN) OF WESTERN UTAH' Georges Ubaghs and R. A. Robison Laboratoire de Paléontologie Animale, Université de Liége, B-4000, Liége, Belgium Department of Geology, The University of Kansas, Lawrence, Kansas 66045 Abstract. —Three new species, representing three of the four homalozoan classes, are described from the upper Wheeler Formation of middle Middle Cambrian age in west- central Utah. Ctenocystis colodon n. sp. is only the fifth species of Ctenocystoidea to be described. The new order Ctenocystida is defined. The solutan Castericystis? sprinklei n. sp. is the fifth species of Homoiostelea to be reported from Cambrian strata. The cornute Cothurnocystis? bifida n. sp. is the fifth species of Stylophora to be reported from Middle Cambrian strata worldwide and only the second from North America. This homalozoan fauna is among the most diverse known from any Cambrian formation. AMONG ECHINODERMS, homalozoans are un House Range, and the stylophoran Cothur- usual in their complete lack of radial symmetry. nocystis? bifida from the House Range. Representatives are relatively rare, especially in Each homalozoan species in the Wheeler Cambrian strata. Three new Cambrian spe- Formation is from a different locality. Such low cies, which represent three of the four homa- diversity is typical of most Cambrian echi- lozoan classes, are described here. All are noderm faunas, although locally each species from the upper Wheeler Formation of west- may be represented by numerous individuals. central Utah and include the ctenocystoid For several years, knowledge of the class Ctenocystis colodon from the Drum Mountains, Ctenocystoidea was limited to the single species the homoiostelean Castericystis? sprinklei from the Ctenocystis utahensis Robison and Sprinkle, 1969, which is locally abundant in the Spence Shale of Manuscript received 15 November 1987. -
Stylophoran Supertrees Revisited
Stylophoran supertrees revisited BERTRAND LEFEBVRE Lefebvre, B. 2005. Stylophoran supertrees revisited. Acta Palaeontologica Polonica 50 (3): 477–486. Supertree analysis is a recent exploratory method that involves the simultaneous combination of two or more charac− ter−based source trees into a single consensus supertree. This method was recently applied by Ruta to a fossil group of enigmatic Palaeozoic forms, the stylophoran echinoderms. Ruta’s supertree suggested that mitrates are polyphyletic and originated from paraphyletic cornutes. Re−examination of Ruta’s data matrix strongly suggests that most source trees were based on dubious homologies resulting from theory−laden assumptions (calcichordate model) or superficial similar− ities (ankyroid scenario). A new supertree analysis was performed using a slightly corrected version of Ruta’s original combined matrix; the 70% majority−rule consensus of 24,168 most parsimonious supertrees suggests that mitrates are monophyletic and derived from paraphyletic cornutes. A second new supertree analysis was generated to test the influ− ence of the pruning of three taxa in some calcichordate source trees; the 70% majority−rule consensus of 3,720 shortest supertrees indicates that both cornutes and mitrates are monophyletic and derived from a Ceratocystis−like ancestor. The two new supertree analyses demonstrate the dramatic influence of the relative contributions of each initial assumption of plate homologies (and underlying anatomical interpretations), in original source trees, on the final topology of supertrees. Key words: Echinodermata, Stylophora, Cornuta, Mitrata, Ankyroida, Calcichordata, supertree, Palaeozoic. Bertrand Lefebvre [bertrand.lefebvre@u−bourgogne.fr], Biogéosciences, Université de Bourgogne, 6 boulevard Ga− briel, F−21000 Dijon, France. Introduction disparate, character−derived trees (Purvis 1995; Bininda− Emonds et al. -
A Stem Group Echinoderm from the Basal Cambrian of China and the Origins of Ambulacraria
ARTICLE https://doi.org/10.1038/s41467-019-09059-3 OPEN A stem group echinoderm from the basal Cambrian of China and the origins of Ambulacraria Timothy P. Topper 1,2,3, Junfeng Guo4, Sébastien Clausen 5, Christian B. Skovsted2 & Zhifei Zhang1 Deuterostomes are a morphologically disparate clade, encompassing the chordates (including vertebrates), the hemichordates (the vermiform enteropneusts and the colonial tube-dwelling pterobranchs) and the echinoderms (including starfish). Although deuter- 1234567890():,; ostomes are considered monophyletic, the inter-relationships between the three clades remain highly contentious. Here we report, Yanjiahella biscarpa, a bilaterally symmetrical, solitary metazoan from the early Cambrian (Fortunian) of China with a characteristic echinoderm-like plated theca, a muscular stalk reminiscent of the hemichordates and a pair of feeding appendages. Our phylogenetic analysis indicates that Y. biscarpa is a stem- echinoderm and not only is this species the oldest and most basal echinoderm, but it also predates all known hemichordates, and is among the earliest deuterostomes. This taxon confirms that echinoderms acquired plating before pentaradial symmetry and that their history is rooted in bilateral forms. Yanjiahella biscarpa shares morphological similarities with both enteropneusts and echinoderms, indicating that the enteropneust body plan is ancestral within hemichordates. 1 Shaanxi Key Laboratory of Early Life and Environments, State Key Laboratory of Continental Dynamics and Department of Geology, Northwest University, 710069 Xi’an, China. 2 Department of Palaeobiology, Swedish Museum of Natural History, Box 50007104 05, Stockholm, Sweden. 3 Department of Earth Sciences, Durham University, Durham DH1 3LE, UK. 4 School of Earth Science and Resources, Key Laboratory for the study of Focused Magmatism and Giant Ore Deposits, MLR, Chang’an University, 710054 Xi’an, China. -
Phylum Porifera
790 Chapter 28 | Invertebrates updated as new information is collected about the organisms of each phylum. 28.1 | Phylum Porifera By the end of this section, you will be able to do the following: • Describe the organizational features of the simplest multicellular organisms • Explain the various body forms and bodily functions of sponges As we have seen, the vast majority of invertebrate animals do not possess a defined bony vertebral endoskeleton, or a bony cranium. However, one of the most ancestral groups of deuterostome invertebrates, the Echinodermata, do produce tiny skeletal “bones” called ossicles that make up a true endoskeleton, or internal skeleton, covered by an epidermis. We will start our investigation with the simplest of all the invertebrates—animals sometimes classified within the clade Parazoa (“beside the animals”). This clade currently includes only the phylum Placozoa (containing a single species, Trichoplax adhaerens), and the phylum Porifera, containing the more familiar sponges (Figure 28.2). The split between the Parazoa and the Eumetazoa (all animal clades above Parazoa) likely took place over a billion years ago. We should reiterate here that the Porifera do not possess “true” tissues that are embryologically homologous to those of all other derived animal groups such as the insects and mammals. This is because they do not create a true gastrula during embryogenesis, and as a result do not produce a true endoderm or ectoderm. But even though they are not considered to have true tissues, they do have specialized cells that perform specific functions like tissues (for example, the external “pinacoderm” of a sponge acts like our epidermis). -
The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins M
Ecology, Evolution and Organismal Biology Ecology, Evolution and Organismal Biology Publications 10-26-2016 The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins M. Desmond Ramirez University of California Autum N. Pairett Iowa State University M. Sabrina Pankey University of New Hampshire, Durham Jeanne M. Serb Iowa State University, [email protected] Daniel I. Speiser University of South Carolina SeFoe nelloxtw pa thige fors aaddndition addal aitutionhorsal works at: http://lib.dr.iastate.edu/eeob_ag_pubs Part of the Animal Sciences Commons, Behavior and Ethology Commons, and the Evolution Commons The ompc lete bibliographic information for this item can be found at http://lib.dr.iastate.edu/ eeob_ag_pubs/240. For information on how to cite this item, please visit http://lib.dr.iastate.edu/ howtocite.html. This Article is brought to you for free and open access by the Ecology, Evolution and Organismal Biology at Iowa State University Digital Repository. It has been accepted for inclusion in Ecology, Evolution and Organismal Biology Publications by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. The Last Common Ancestor of Most Bilaterian Animals Possessed at Least Nine Opsins Abstract The opsin eg ne family encodes key proteins animals use to sense light and has expanded dramatically as it originated early in animal evolution. Understanding the origins of opsin diversity can offer clues to how separate lineages of animals have repurposed different opsin paralogs for different light-detecting functions. However, the more we look for opsins outside of eyes and from additional animal phyla, the more opsins we uncover, suggesting we still do not know the true extent of opsin diversity, nor the ancestry of opsin diversity in animals.